Wall clock time and date at job start Tue Mar 31 2020 04:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.54245 * 2 1 4 4 O 1.35207 * 125.49269 * 359.96627 * 3 2 1 5 5 N 1.31537 * 109.01608 * 180.23531 * 3 2 1 6 6 C 1.33229 * 109.75717 * 359.76726 * 5 3 2 7 7 C 1.36720 * 107.96377 * 359.97438 * 6 5 3 8 8 C 1.46374 * 126.82558 * 179.97438 * 7 6 5 9 9 O 1.21732 * 120.00376 * 186.71216 * 8 7 6 10 10 N 1.34775 * 119.99832 * 6.99359 * 8 7 6 11 11 C 1.47422 * 125.65023 * 5.08978 * 10 8 7 12 12 C 1.54917 * 104.83528 * 155.83749 * 11 10 8 13 13 C 1.55150 * 101.57942 * 37.00700 * 12 11 10 14 14 C 1.47026 * 125.64910 * 184.78308 * 10 8 7 15 15 H 1.08997 * 109.88211 * 300.51276 * 14 10 8 16 16 C 1.53007 * 109.88287 * 61.67686 * 14 10 8 17 17 N 1.46498 * 109.46947 * 288.69159 * 16 14 10 18 18 C 1.36938 * 119.99999 * 171.93480 * 17 16 14 19 19 H 1.07994 * 119.99558 * 353.80165 * 18 17 16 20 20 C 1.38809 * 119.99973 * 173.81207 * 18 17 16 21 21 N 1.31618 * 119.99697 * 179.67107 * 20 18 17 22 22 Si 1.86800 * 120.00243 * 359.66069 * 20 18 17 23 23 H 1.48508 * 109.46832 * 92.99937 * 22 20 18 24 24 H 1.48500 * 109.47399 * 212.99803 * 22 20 18 25 25 H 1.48495 * 109.47006 * 333.00285 * 22 20 18 26 26 H 1.09003 * 109.46735 * 265.78625 * 1 2 3 27 27 H 1.08998 * 109.47350 * 25.77986 * 1 2 3 28 28 H 1.08993 * 109.46940 * 145.78700 * 1 2 3 29 29 H 0.96699 * 114.00248 * 270.28559 * 4 3 2 30 30 H 1.07993 * 126.01447 * 180.02562 * 6 5 3 31 31 H 1.09002 * 110.36800 * 274.67723 * 11 10 8 32 32 H 1.08999 * 110.36517 * 36.99738 * 11 10 8 33 33 H 1.08997 * 111.00417 * 155.08133 * 12 11 10 34 34 H 1.09002 * 110.99807 * 278.93523 * 12 11 10 35 35 H 1.09002 * 110.71967 * 82.86218 * 13 12 11 36 36 H 1.09003 * 110.72021 * 205.95881 * 13 12 11 37 37 H 1.08996 * 109.46620 * 48.68687 * 16 14 10 38 38 H 1.08996 * 109.46834 * 168.68729 * 16 14 10 39 39 H 0.97006 * 120.00317 * 351.93114 * 17 16 14 40 40 H 0.97006 * 120.00171 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2686 1.0842 0.0000 4 8 1.8515 2.3703 -0.0006 5 7 3.5229 0.6881 -0.0051 6 6 3.5747 -0.6432 -0.0034 7 6 2.2916 -1.1152 0.0036 8 6 1.8727 -2.5177 0.0072 9 8 0.6947 -2.8014 -0.1097 10 7 2.7906 -3.4948 0.1456 11 6 4.2274 -3.2931 0.4068 12 6 4.6966 -4.6074 1.0794 13 6 3.8630 -5.6659 0.3100 14 6 2.5238 -4.9385 0.0675 15 1 1.8011 -5.2238 0.8319 16 6 1.9856 -5.2939 -1.3200 17 7 0.6212 -4.7793 -1.4610 18 6 -0.0078 -4.8307 -2.6763 19 1 0.5343 -5.1571 -3.5515 20 6 -1.3421 -4.4632 -2.7834 21 7 -1.9448 -4.5065 -3.9526 22 14 -2.2823 -3.9074 -1.2679 23 1 -2.2076 -2.4286 -1.1538 24 1 -3.7028 -4.3236 -1.3864 25 1 -1.6838 -4.5280 -0.0589 26 1 -0.3633 -0.0755 1.0249 27 1 -0.3634 0.9254 -0.4469 28 1 -0.3633 -0.8498 -0.5778 29 1 1.7264 2.7428 -0.8842 30 1 4.4723 -1.2437 -0.0063 31 1 4.7642 -3.1330 -0.5283 32 1 4.3758 -2.4486 1.0797 33 1 5.7643 -4.7648 0.9269 34 1 4.4501 -4.6124 2.1412 35 1 4.3429 -5.9228 -0.6343 36 1 3.7134 -6.5568 0.9200 37 1 2.6232 -4.8465 -2.0825 38 1 1.9797 -6.3771 -1.4409 39 1 0.1633 -4.4021 -0.6935 40 1 -2.8773 -4.2500 -4.0275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666447178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:21 Heat of formation + Delta-G solvation = 8.988282 kcal Electronic energy + Delta-G solvation = -24970.655385 eV Core-core repulsion = 21401.611452 eV Total energy + Delta-G solvation = -3569.043932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.39687 -41.07983 -38.59758 -38.27338 -36.43901 -35.23271 -33.70570 -32.86999 -30.97599 -29.90005 -28.21731 -26.85401 -25.26873 -23.93461 -22.97890 -22.50223 -21.71894 -20.34929 -19.88981 -19.43913 -18.14641 -17.70345 -17.65297 -16.77641 -16.58174 -16.49954 -15.65665 -15.41837 -15.24345 -14.92565 -14.70484 -14.57017 -14.09727 -13.84902 -13.79444 -13.69413 -13.58504 -13.44715 -13.19026 -12.98687 -12.72111 -12.14707 -11.95672 -11.85308 -11.76036 -11.52324 -11.42200 -10.99112 -10.96724 -10.79929 -9.76726 -9.53453 -9.14169 -8.03454 -5.29727 0.09647 1.04901 1.31066 1.35096 1.48520 1.52004 2.03764 2.24535 2.49666 2.74091 3.28633 3.36734 3.57444 3.69251 3.74552 3.85688 3.99732 4.13374 4.17434 4.26236 4.30615 4.35671 4.51885 4.63350 4.76159 4.81181 4.88560 4.90252 5.05022 5.15055 5.22146 5.25813 5.43198 5.45516 5.51721 5.75408 6.22670 6.45578 6.49788 6.62157 7.04447 7.24443 8.00554 8.25542 9.18867 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.007696 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.030912 B = 3637.484854 C = 5518.729002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.434 5.434 3 C 0.399 3.601 4 O -0.440 6.440 5 N -0.507 5.507 6 C 0.054 3.946 7 C -0.092 4.092 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.601 5.601 11 C 0.074 3.926 12 C -0.117 4.117 13 C -0.115 4.115 14 C 0.132 3.868 15 H 0.061 0.939 16 C 0.141 3.859 17 N -0.757 5.757 18 C -0.219 4.219 19 H 0.051 0.949 20 C -0.063 4.063 21 N -0.987 5.987 22 Si 0.966 3.034 23 H -0.281 1.281 24 H -0.303 1.303 25 H -0.273 1.273 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.427 0.573 30 H 0.224 0.776 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.022 0.978 38 H 0.034 0.966 39 H 0.382 0.618 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.743 7.594 13.691 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.126 5.126 3 C 0.099 3.901 4 O -0.244 6.244 5 N -0.237 5.237 6 C -0.100 4.100 7 C -0.208 4.208 8 C 0.385 3.615 9 O -0.437 6.437 10 N -0.334 5.334 11 C -0.046 4.046 12 C -0.154 4.154 13 C -0.153 4.153 14 C 0.028 3.972 15 H 0.079 0.921 16 C 0.013 3.987 17 N -0.411 5.411 18 C -0.351 4.351 19 H 0.069 0.931 20 C -0.254 4.254 21 N -0.639 5.639 22 Si 0.796 3.204 23 H -0.207 1.207 24 H -0.231 1.231 25 H -0.199 1.199 26 H 0.107 0.893 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.288 0.712 30 H 0.240 0.760 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.225 0.775 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.493 8.088 14.045 23.123 hybrid contribution -2.273 0.012 -0.404 2.308 sum 14.220 8.100 13.641 21.305 Atomic orbital electron populations 1.22303 0.74815 1.05614 1.04777 1.45756 1.08833 1.05858 1.52167 1.20406 0.84427 0.82009 1.03247 1.84763 1.86791 1.16461 1.36398 1.70371 1.16663 1.13279 1.23356 1.23588 0.96105 0.89975 1.00289 1.20538 0.92002 0.87793 1.20480 1.16526 0.84745 0.83419 0.76771 1.90561 1.18739 1.82953 1.51464 1.48141 1.09716 1.05288 1.70236 1.23129 0.78724 1.01057 1.01725 1.22810 1.01723 0.91243 0.99651 1.22655 0.91373 0.98650 1.02620 1.21977 0.99633 0.79709 0.95834 0.92134 1.21272 0.85415 0.96634 0.95331 1.43509 1.14393 1.74124 1.09123 1.19092 0.93455 1.34851 0.87654 0.93143 1.25314 0.97693 1.03304 0.99051 1.69890 1.11765 1.57653 1.24615 0.85224 0.76257 0.78430 0.80478 1.20741 1.23070 1.19886 0.89329 0.86459 0.90884 0.71155 0.75951 0.89182 0.88193 0.86149 0.89851 0.89167 0.88032 0.96009 0.94781 0.77536 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.90 10.61 127.77 1.36 3.26 16 2 N -0.43 -12.97 3.20 -651.99 -2.09 -15.06 16 3 C 0.40 10.60 9.01 179.99 1.62 12.22 16 4 O -0.44 -8.67 13.46 -84.87 -1.14 -9.82 16 5 N -0.51 -13.96 11.22 -313.65 -3.52 -17.48 16 6 C 0.05 1.38 10.18 84.13 0.86 2.23 16 7 C -0.09 -2.89 6.85 39.80 0.27 -2.62 16 8 C 0.60 21.49 7.50 86.36 0.65 22.13 16 9 O -0.56 -25.22 10.28 -4.45 -0.05 -25.26 16 10 N -0.60 -17.10 3.07 -793.03 -2.43 -19.53 16 11 C 0.07 1.21 5.12 86.86 0.44 1.65 16 12 C -0.12 -1.29 7.08 31.99 0.23 -1.07 16 13 C -0.11 -1.92 6.46 31.78 0.21 -1.72 16 14 C 0.13 3.86 3.08 45.34 0.14 4.00 16 15 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.14 5.63 5.64 86.38 0.49 6.12 16 17 N -0.76 -39.67 4.18 -343.46 -1.44 -41.11 16 18 C -0.22 -13.67 10.47 84.03 0.88 -12.79 16 19 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 20 C -0.06 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.99 -67.31 13.97 21.65 0.30 -67.01 16 22 Si 0.97 52.94 26.86 68.60 1.84 54.78 16 23 H -0.28 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 25 H -0.27 -14.59 6.50 99.48 0.65 -13.94 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.12 2.48 8.05 -2.39 -0.02 2.46 16 28 H 0.07 2.74 6.63 -2.39 -0.02 2.72 16 29 H 0.43 3.98 9.06 -74.06 -0.67 3.31 16 30 H 0.22 3.84 4.78 -2.91 -0.01 3.83 16 31 H 0.09 1.24 7.77 -2.39 -0.02 1.22 16 32 H 0.10 1.34 5.89 -2.39 -0.01 1.32 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.42 7.86 -2.39 -0.02 1.40 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.38 20.23 2.64 -95.16 -0.25 19.98 16 40 H 0.25 16.53 8.31 -92.70 -0.77 15.75 16 Total: -1.00 -88.98 320.49 -0.81 -89.79 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.11 Total: 20.83 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 7.60 Total: 29.86 kcal Atomic # 7 Polarization: -151.01 SS G_CDS: -9.17 Total: -160.18 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.19 Total: -35.08 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 1.84 Total: 54.78 kcal Total: -88.98 -0.81 -89.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666447178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.779 kcal (2) G-P(sol) polarization free energy of solvation -88.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds