Wall clock time and date at job start Tue Mar 31 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 N 1.46507 * 109.46602 * 240.00073 * 2 1 3 5 5 C 1.36935 * 119.99742 * 85.00573 * 4 2 1 6 6 H 1.07999 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99464 * 0.27719 * 7 5 4 9 9 Si 1.86800 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 90.00170 * 9 7 5 11 11 H 1.48499 * 109.47026 * 210.00018 * 9 7 5 12 12 H 1.48496 * 109.47474 * 330.00054 * 9 7 5 13 13 C 1.53001 * 109.47014 * 120.00552 * 2 1 3 14 14 H 1.08997 * 109.47152 * 184.99698 * 13 2 1 15 15 C 1.53000 * 109.47326 * 64.99795 * 13 2 1 16 16 N 1.46501 * 109.47001 * 304.99538 * 13 2 1 17 17 C 1.34769 * 120.00067 * 205.00101 * 16 13 2 18 18 O 1.21572 * 119.99963 * 0.02562 * 17 16 13 19 19 C 1.47725 * 120.00181 * 180.02562 * 17 16 13 20 20 C 1.40943 * 125.97357 * 180.02562 * 19 17 16 21 21 C 1.36172 * 107.94768 * 180.08154 * 20 19 17 22 22 N 1.35796 * 107.31560 * 359.64138 * 21 20 19 23 23 N 1.31835 * 125.97161 * 359.68389 * 19 17 16 24 24 C 1.47428 * 108.07287 * 180.66326 * 22 21 20 25 25 C 1.54647 * 102.35228 * 15.25457 * 24 22 21 26 26 O 1.36122 * 140.87381 * 179.13054 * 21 20 19 27 27 H 1.09005 * 109.47240 * 299.99841 * 1 2 3 28 28 H 1.09005 * 109.47291 * 59.99545 * 1 2 3 29 29 H 1.09000 * 109.47695 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00180 * 264.99500 * 4 2 1 31 31 H 0.97001 * 120.00638 * 359.71685 * 8 7 5 32 32 H 1.09001 * 109.47470 * 180.02562 * 15 13 2 33 33 H 1.09006 * 109.47015 * 300.00152 * 15 13 2 34 34 H 1.08998 * 109.47201 * 59.99485 * 15 13 2 35 35 H 0.97007 * 119.99819 * 25.00362 * 16 13 2 36 36 H 1.08000 * 126.02794 * 0.05079 * 20 19 17 37 37 H 1.08992 * 110.83068 * 133.47109 * 24 22 21 38 38 H 1.08999 * 110.82778 * 257.04188 * 24 22 21 39 39 H 1.08992 * 110.85310 * 93.35417 * 25 24 22 40 40 H 1.09005 * 110.85524 * 216.78424 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6121 -0.6617 -3.5092 8 7 2.9203 -1.9399 -3.4513 9 14 2.7899 0.2702 -5.1183 10 1 4.1518 0.8561 -5.2032 11 1 2.5801 -0.6614 -6.2556 12 1 1.7792 1.3566 -5.1755 13 6 2.0400 -0.7214 1.2492 14 1 3.1262 -0.6445 1.2951 15 6 1.6352 -2.1956 1.1878 16 7 1.4559 -0.1038 2.4424 17 6 2.0912 -0.1940 3.6275 18 8 3.1493 -0.7875 3.7063 19 6 1.5020 0.4283 4.8307 20 6 2.0556 0.4118 6.1268 21 6 1.2117 1.0906 6.9522 22 7 0.1697 1.5241 6.1971 23 7 0.3695 1.1014 4.8787 24 6 -0.7478 2.2762 7.0724 25 6 0.1246 2.5332 8.3232 26 8 1.0780 1.4567 8.2564 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2489 -1.6318 -1.1528 31 1 2.8277 -2.4239 -2.6158 32 1 1.9981 -2.7094 2.0780 33 1 0.5488 -2.2725 1.1419 34 1 2.0697 -2.6550 0.3001 35 1 0.6117 0.3700 2.3794 36 1 2.9851 -0.0569 6.4146 37 1 -1.0444 3.2160 6.6069 38 1 -1.6212 1.6753 7.3260 39 1 0.6249 3.4992 8.2554 40 1 -0.4729 2.4706 9.2327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674681862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:29 Heat of formation + Delta-G solvation = 50.809124 kcal Electronic energy + Delta-G solvation = -23282.811126 eV Core-core repulsion = 19715.580682 eV Total energy + Delta-G solvation = -3567.230445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.63416 -39.93060 -38.63231 -36.94039 -34.14880 -33.68278 -31.98091 -30.39236 -29.29321 -29.00255 -28.03284 -25.16747 -24.16114 -23.42728 -22.54092 -21.70490 -20.12104 -19.31859 -18.18718 -17.51993 -17.37418 -16.67885 -16.00690 -15.85692 -15.40860 -15.00712 -14.76955 -14.53102 -14.21720 -13.92493 -13.67551 -13.57569 -13.18705 -13.00378 -12.78316 -12.52894 -11.97800 -11.75444 -11.69188 -11.48987 -11.23469 -10.83377 -10.58451 -10.39364 -10.18164 -10.09292 -9.97608 -9.55356 -9.20184 -8.92793 -8.85894 -8.84000 -7.05194 -6.08910 -3.09567 1.06560 1.46847 1.83700 2.38250 3.21918 3.34246 3.46684 3.53523 3.58400 3.72093 4.02863 4.12122 4.42254 4.55939 4.69145 4.71353 4.92119 4.99510 5.25597 5.31518 5.42859 5.54433 5.59846 5.66556 5.73994 6.00201 6.07314 6.09477 6.23453 6.34643 6.38156 6.48040 6.56501 6.67056 6.81292 7.02796 7.10687 7.64264 7.82527 8.23574 8.76770 9.22712 10.08826 10.23044 11.39366 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.002811 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.447902 B = 9959.898187 C =10309.030026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.054 0.946 4 N -0.730 5.730 5 C -0.331 4.331 6 H 0.065 0.935 7 C -0.044 4.044 8 N -0.943 5.943 9 Si 1.083 2.917 10 H -0.295 1.295 11 H -0.288 1.288 12 H -0.295 1.295 13 C 0.134 3.866 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.701 5.701 17 C 0.599 3.401 18 O -0.522 6.522 19 C 0.060 3.940 20 C -0.212 4.212 21 C 0.231 3.769 22 N -0.414 5.414 23 N -0.218 5.218 24 C 0.098 3.902 25 C 0.041 3.959 26 O -0.279 6.279 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.370 0.630 31 H 0.255 0.745 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.405 0.595 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 9.345 25.056 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.462 4.462 6 H 0.083 0.917 7 C -0.242 4.242 8 N -0.588 5.588 9 Si 0.914 3.086 10 H -0.223 1.223 11 H -0.214 1.214 12 H -0.222 1.222 13 C 0.029 3.971 14 H 0.110 0.890 15 C -0.218 4.218 16 N -0.354 5.354 17 C 0.381 3.619 18 O -0.395 6.395 19 C -0.107 4.107 20 C -0.242 4.242 21 C 0.064 3.936 22 N -0.211 5.211 23 N -0.048 5.048 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.186 6.186 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.205 0.795 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.184 0.816 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.059 9.413 22.965 26.421 hybrid contribution -0.487 0.081 2.220 2.274 sum -9.546 9.494 25.184 28.557 Atomic orbital electron populations 1.22521 0.99150 1.01252 0.99972 1.20289 0.92241 0.95597 0.85546 0.92807 1.42453 1.79376 1.09929 1.05768 1.20055 1.42046 0.95197 0.88900 0.91670 1.25770 0.99314 0.97490 1.01620 1.70846 1.51330 1.08200 1.28461 0.83189 0.75827 0.74118 0.75451 1.22305 1.21411 1.22198 1.21438 0.99208 0.92950 0.83463 0.89044 1.22150 1.01730 0.95647 1.02269 1.46120 1.25808 1.55760 1.07721 1.16787 0.84061 0.79705 0.81347 1.90828 1.21580 1.42422 1.84720 1.22079 0.93510 0.99921 0.95179 1.20083 1.03176 1.11979 0.88942 1.20752 0.91661 0.99169 0.82017 1.50673 1.19062 1.44819 1.06571 1.77687 1.17783 1.17375 0.91997 1.23259 0.93115 0.98135 0.87798 1.24457 0.89147 0.90991 0.98898 1.87148 1.61833 1.50783 1.18788 0.94603 0.92279 0.92884 0.79505 0.93328 0.92688 0.92318 0.90842 0.75786 0.81604 0.86855 0.87610 0.88721 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.01 37.16 0.33 -2.65 16 2 C 0.17 3.47 2.93 -67.93 -0.20 3.27 16 3 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.73 -18.08 5.03 -53.42 -0.27 -18.35 16 5 C -0.33 -9.25 9.93 -15.06 -0.15 -9.40 16 6 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 7 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 8 N -0.94 -29.19 13.70 55.49 0.76 -28.43 16 9 Si 1.08 26.06 29.92 -169.99 -5.09 20.98 16 10 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.13 2.39 2.62 -67.93 -0.18 2.21 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 C -0.16 -2.74 9.00 37.16 0.33 -2.40 16 16 N -0.70 -10.89 4.99 -54.79 -0.27 -11.16 16 17 C 0.60 9.75 7.79 -12.39 -0.10 9.66 16 18 O -0.52 -9.95 16.56 5.30 0.09 -9.86 16 19 C 0.06 0.87 7.09 -82.97 -0.59 0.28 16 20 C -0.21 -2.76 10.60 -39.30 -0.42 -3.18 16 21 C 0.23 2.59 8.32 -16.54 -0.14 2.45 16 22 N -0.41 -4.37 5.01 -59.64 -0.30 -4.67 16 23 N -0.22 -2.90 12.39 33.32 0.41 -2.49 16 24 C 0.10 0.46 8.10 -2.67 -0.02 0.44 16 25 C 0.04 0.14 8.08 38.02 0.31 0.45 16 26 O -0.28 -2.40 11.19 -20.13 -0.23 -2.63 16 27 H 0.04 0.52 6.29 -51.93 -0.33 0.19 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.93 6.57 -51.93 -0.34 0.59 16 30 H 0.37 9.37 4.60 -40.82 -0.19 9.18 16 31 H 0.26 7.77 6.77 -40.82 -0.28 7.50 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.94 6.57 -51.93 -0.34 0.60 16 34 H 0.07 1.36 6.29 -51.93 -0.33 1.03 16 35 H 0.41 5.68 6.27 -40.82 -0.26 5.43 16 36 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -35.47 332.82 -5.82 -41.29 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.03 Total: 10.56 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.91 Total: -0.25 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: 0.33 Total: -65.10 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.14 Total: -12.49 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.09 Total: 20.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.47 -5.82 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674681862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.094 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds