Wall clock time and date at job start Tue Mar 31 2020 04:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47163 * 2 1 4 4 C 1.53007 * 109.47136 * 119.99381 * 2 1 3 5 5 N 1.46498 * 109.47005 * 174.99971 * 4 2 1 6 6 C 1.34784 * 119.99658 * 180.02562 * 5 4 2 7 7 O 1.21617 * 119.99857 * 0.02562 * 6 5 4 8 8 C 1.47291 * 119.99759 * 179.97438 * 6 5 4 9 9 C 1.37928 * 125.89859 * 179.68960 * 8 6 5 10 10 C 1.39447 * 107.46182 * 179.84724 * 9 8 6 11 11 C 1.37928 * 107.45979 * 0.41940 * 10 9 8 12 12 C 1.47294 * 125.90170 * 179.74139 * 11 10 9 13 13 N 1.34780 * 120.00246 * 180.02562 * 12 11 10 14 14 O 1.21619 * 120.00151 * 359.97438 * 12 11 10 15 15 N 1.36753 * 125.90194 * 0.02562 * 8 6 5 16 16 H 0.97006 * 125.66286 * 0.02562 * 15 8 6 17 17 N 1.46496 * 109.47192 * 239.99377 * 2 1 3 18 18 C 1.46497 * 120.00067 * 299.99985 * 17 2 1 19 19 C 1.36939 * 119.99719 * 120.00302 * 17 2 1 20 20 H 1.07997 * 120.00168 * 20.36313 * 19 17 2 21 21 C 1.38820 * 119.99743 * 200.36115 * 19 17 2 22 22 N 1.31620 * 119.99819 * 15.04723 * 21 19 17 23 23 Si 1.86800 * 119.99826 * 195.03998 * 21 19 17 24 24 H 1.48498 * 109.46833 * 84.84382 * 23 21 19 25 25 H 1.48502 * 109.46777 * 204.84069 * 23 21 19 26 26 H 1.48501 * 109.47232 * 324.84244 * 23 21 19 27 27 H 1.09000 * 109.47175 * 60.00718 * 1 2 3 28 28 H 1.08998 * 109.47572 * 300.00684 * 1 2 3 29 29 H 1.08994 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47227 * 295.00233 * 4 2 1 31 31 H 1.09004 * 109.46523 * 54.99620 * 4 2 1 32 32 H 0.96999 * 120.00576 * 0.02562 * 5 4 2 33 33 H 1.08004 * 126.27123 * 0.02562 * 9 8 6 34 34 H 1.08003 * 126.27326 * 180.16216 * 10 9 8 35 35 H 0.96996 * 119.99593 * 359.97438 * 13 12 11 36 36 H 0.97000 * 119.99668 * 179.97438 * 13 12 11 37 37 H 1.09004 * 109.47065 * 95.15368 * 18 17 2 38 38 H 1.09000 * 109.47105 * 215.14725 * 18 17 2 39 39 H 1.08998 * 109.47356 * 335.15365 * 18 17 2 40 40 H 0.97003 * 119.99637 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1909 7 8 3.5680 -1.8860 3.1419 8 6 5.6408 -1.5352 2.1317 9 6 6.4486 -2.1186 3.0854 10 6 7.7660 -2.0099 2.6412 11 6 7.7410 -1.3534 1.4284 12 6 8.9141 -1.0187 0.6031 13 7 8.7518 -0.3713 -0.5679 14 8 10.0294 -1.3256 0.9786 15 7 6.4388 -1.0667 1.1247 16 1 6.1320 -0.6071 0.3274 17 7 2.0183 -0.6907 -1.1961 18 6 1.6644 -2.0933 -1.4277 19 6 2.8056 -0.0253 -2.0974 20 1 3.3354 0.8665 -1.7968 21 6 2.9229 -0.4971 -3.3977 22 7 2.0693 -1.3893 -3.8535 23 14 4.2919 0.1346 -4.5006 24 1 5.5286 -0.6491 -4.2526 25 1 3.8895 -0.0124 -5.9225 26 1 4.5457 1.5672 -4.2034 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.7516 -0.1582 2.1370 31 1 1.6052 -1.7197 1.2953 32 1 3.9825 -0.4621 0.4320 33 1 6.1207 -2.5783 4.0060 34 1 8.6453 -2.3697 3.1549 35 1 7.8624 -0.1262 -0.8672 36 1 9.5245 -0.1506 -1.1112 37 1 0.7893 -2.1450 -2.0756 38 1 2.5003 -2.6049 -1.9048 39 1 1.4402 -2.5736 -0.4753 40 1 2.1511 -1.7187 -4.7622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674997408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:21 Heat of formation + Delta-G solvation = -35.385301 kcal Electronic energy + Delta-G solvation = -23892.785632 eV Core-core repulsion = 20321.817516 eV Total energy + Delta-G solvation = -3570.968115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -42.59508 -40.57153 -39.74608 -38.36842 -35.52474 -34.92561 -33.83998 -32.14186 -31.28412 -30.61489 -28.02180 -27.37413 -25.15930 -24.67017 -22.56664 -21.50906 -21.28335 -20.86481 -19.94868 -18.84619 -18.26778 -17.83859 -17.18814 -16.95125 -16.54243 -16.06990 -15.83706 -15.66232 -15.12350 -15.08844 -14.74272 -14.51017 -14.47174 -13.93770 -13.75156 -13.73727 -13.52812 -13.06225 -12.86107 -12.66392 -12.53367 -12.27499 -12.09072 -11.77113 -11.62826 -11.51669 -11.21595 -10.88797 -10.60339 -10.18989 -10.12441 -9.41665 -8.81055 -7.78244 -5.24948 -0.07962 1.08556 1.49308 1.52904 1.60791 1.72519 2.14285 2.20999 2.29089 2.38393 2.53745 3.36689 3.62663 3.75491 3.81723 4.03381 4.17833 4.22019 4.36286 4.60519 4.71658 4.76591 4.79452 4.92915 5.05024 5.06031 5.23639 5.30272 5.35733 5.41582 5.52859 5.68097 5.68647 5.74208 5.75746 6.02655 6.27425 6.33825 6.52734 7.07551 7.08965 7.17394 7.89414 8.35719 9.25479 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005839 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.484353 B = 4794.212082 C = 6807.495558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.699 5.699 6 C 0.581 3.419 7 O -0.567 6.567 8 C -0.015 4.015 9 C -0.128 4.128 10 C -0.125 4.125 11 C -0.026 4.026 12 C 0.596 3.404 13 N -0.834 5.834 14 O -0.566 6.566 15 N -0.505 5.505 16 H 0.429 0.571 17 N -0.602 5.602 18 C 0.185 3.815 19 C -0.258 4.258 20 H 0.088 0.912 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.962 3.038 24 H -0.278 1.278 25 H -0.313 1.313 26 H -0.263 1.263 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.407 0.593 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.411 0.589 36 H 0.419 0.581 37 H -0.002 1.002 38 H 0.014 0.986 39 H 0.019 0.981 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 4.001 8.499 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.097 0.903 4 C -0.010 4.010 5 N -0.349 5.349 6 C 0.368 3.632 7 O -0.446 6.446 8 C -0.133 4.133 9 C -0.155 4.155 10 C -0.151 4.151 11 C -0.144 4.144 12 C 0.381 3.619 13 N -0.398 5.398 14 O -0.445 6.445 15 N -0.104 5.104 16 H 0.270 0.730 17 N -0.326 5.326 18 C 0.039 3.961 19 C -0.388 4.388 20 H 0.106 0.894 21 C -0.249 4.249 22 N -0.586 5.586 23 Si 0.791 3.209 24 H -0.204 1.204 25 H -0.241 1.241 26 H -0.187 1.187 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.243 0.757 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.241 0.759 36 H 0.252 0.748 37 H 0.017 0.983 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.616 3.468 9.206 12.442 hybrid contribution 0.132 0.482 -2.298 2.351 sum 7.748 3.950 6.909 11.107 Atomic orbital electron populations 1.22083 0.96213 1.01253 1.01431 1.20797 0.93562 0.95662 0.85089 0.90292 1.21880 0.78938 1.00929 0.99287 1.45758 1.08686 1.57991 1.22473 1.17374 0.85144 0.78101 0.82606 1.90783 1.68957 1.50070 1.34816 1.20560 0.90355 1.09116 0.93297 1.21444 0.91538 1.02504 0.99971 1.21464 0.97997 1.01375 0.94252 1.20559 0.83200 1.10645 0.99994 1.17158 0.86602 0.77061 0.81034 1.43622 1.14359 1.59978 1.21795 1.90854 1.25389 1.55617 1.72622 1.41920 1.05256 1.44144 1.19031 0.73033 1.44182 1.58426 1.07820 1.22146 1.20364 0.97358 0.84222 0.94127 1.19642 1.19424 1.09403 0.90295 0.89388 1.25758 1.00630 1.00334 0.98194 1.70277 1.37095 1.35407 1.15832 0.85362 0.79566 0.78702 0.77261 1.20403 1.24129 1.18715 0.94031 0.90441 0.93863 0.90176 0.93074 0.75651 0.81975 0.81614 0.75921 0.74785 0.98339 0.96734 0.96271 0.94744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.19 71.98 0.66 -3.97 16 2 C 0.16 5.12 2.87 44.99 0.13 5.25 16 3 H 0.08 2.46 7.85 -2.39 -0.02 2.44 16 4 C 0.12 3.46 4.93 86.38 0.43 3.89 16 5 N -0.70 -20.34 5.38 -466.49 -2.51 -22.86 16 6 C 0.58 17.83 7.81 86.62 0.68 18.51 16 7 O -0.57 -20.77 16.87 -4.08 -0.07 -20.84 16 8 C -0.01 -0.39 7.04 40.69 0.29 -0.10 16 9 C -0.13 -3.19 10.60 22.49 0.24 -2.95 16 10 C -0.12 -2.92 10.60 22.49 0.24 -2.68 16 11 C -0.03 -0.60 7.04 40.69 0.29 -0.31 16 12 C 0.60 13.69 8.08 86.62 0.70 14.39 16 13 N -0.83 -12.82 8.87 -175.97 -1.56 -14.38 16 14 O -0.57 -16.96 17.71 -4.09 -0.07 -17.03 16 15 N -0.50 -10.84 5.90 -172.56 -1.02 -11.85 16 16 H 0.43 7.45 7.34 -92.70 -0.68 6.77 16 17 N -0.60 -25.03 2.29 -702.79 -1.61 -26.64 16 18 C 0.18 8.35 8.00 127.77 1.02 9.37 16 19 C -0.26 -11.57 9.34 84.04 0.79 -10.78 16 20 H 0.09 3.57 7.81 -2.91 -0.02 3.54 16 21 C -0.05 -2.64 5.06 84.86 0.43 -2.21 16 22 N -0.94 -51.34 10.67 21.65 0.23 -51.11 16 23 Si 0.96 38.76 29.58 68.60 2.03 40.79 16 24 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.31 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.39 7.67 -2.39 -0.02 1.37 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 1.71 6.86 -2.38 -0.02 1.69 16 32 H 0.41 11.25 6.99 -92.71 -0.65 10.60 16 33 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.41 4.78 7.93 -92.71 -0.74 4.05 16 36 H 0.42 5.20 8.93 -92.71 -0.83 4.37 16 37 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 16 38 H 0.01 0.70 7.22 -2.39 -0.02 0.69 16 39 H 0.02 0.77 6.53 -2.39 -0.02 0.76 16 40 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -65.83 340.56 -0.47 -66.31 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -1.77 Total: 29.20 kcal Atomic # 6 Polarization: 22.53 SS G_CDS: 5.88 Total: 28.41 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.47 Total: -126.84 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.14 Total: -37.87 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -65.83 -0.47 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674997408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.923 kcal (2) G-P(sol) polarization free energy of solvation -65.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds