Wall clock time and date at job start Tue Mar 31 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29950 * 125.30659 * 2 1 4 4 O 1.41879 * 107.41205 * 179.97438 * 3 2 1 5 5 N 1.41875 * 106.38813 * 359.77982 * 4 3 2 6 6 C 1.29947 * 107.41621 * 0.36618 * 5 4 3 7 7 C 1.50701 * 125.30707 * 179.89293 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.69639 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09001 * 112.84617 * 23.80039 * 11 10 8 13 13 C 1.53784 * 113.61657 * 154.99545 * 11 10 8 14 14 C 1.53781 * 87.07783 * 89.11457 * 13 11 10 15 15 H 1.09000 * 113.61726 * 270.87987 * 14 13 11 16 16 C 1.53005 * 113.61158 * 140.06544 * 14 13 11 17 17 N 1.46500 * 109.46988 * 174.99857 * 16 14 13 18 18 C 1.36933 * 120.00023 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00224 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00039 * 179.97438 * 18 17 16 21 21 N 1.31613 * 120.00265 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 120.00032 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46750 * 60.00219 * 22 20 18 24 24 H 1.48494 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46880 * 300.00257 * 22 20 18 26 26 C 1.53780 * 113.61487 * 252.49468 * 11 10 8 27 27 H 1.08997 * 109.47325 * 270.00464 * 1 2 3 28 28 H 1.09006 * 109.46615 * 30.00247 * 1 2 3 29 29 H 1.08993 * 109.47325 * 150.00305 * 1 2 3 30 30 H 1.09002 * 109.47060 * 29.69602 * 7 6 5 31 31 H 1.09001 * 109.47380 * 149.69690 * 7 6 5 32 32 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 33 33 H 1.08995 * 113.61727 * 203.65966 * 13 11 10 34 34 H 1.08996 * 113.61451 * 334.48761 * 13 11 10 35 35 H 1.08995 * 109.47098 * 294.99909 * 16 14 13 36 36 H 1.08998 * 109.47184 * 55.00048 * 16 14 13 37 37 H 0.97003 * 120.00353 * 0.02562 * 17 16 14 38 38 H 0.96997 * 120.00591 * 180.02562 * 21 20 18 39 39 H 1.09001 * 113.61356 * 25.42688 * 26 11 10 40 40 H 1.08995 * 113.61962 * 156.32865 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6245 0.0006 5 7 3.5709 -0.7937 0.0062 6 6 2.3212 -1.1499 0.0007 7 6 1.8208 -2.5714 0.0014 8 6 1.6540 -3.0460 -1.4192 9 8 1.9154 -2.3029 -2.3414 10 7 1.2135 -4.2958 -1.6649 11 6 1.0519 -4.7573 -3.0458 12 1 1.6759 -4.2085 -3.7512 13 6 1.1450 -6.2846 -3.1999 14 6 -0.3724 -6.3230 -2.9531 15 1 -0.6416 -6.4078 -1.9003 16 6 -1.1119 -7.3284 -3.8382 17 7 -2.5232 -7.3768 -3.4481 18 6 -3.3870 -8.2116 -4.1054 19 1 -3.0278 -8.8347 -4.9110 20 6 -4.7241 -8.2578 -3.7355 21 7 -5.1619 -7.4989 -2.7534 22 14 -5.9024 -9.3973 -4.6317 23 1 -5.4409 -10.8012 -4.4851 24 1 -7.2621 -9.2595 -4.0509 25 1 -5.9407 -9.0366 -6.0716 26 6 -0.4163 -4.8812 -3.4862 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5137 30 1 2.5395 -3.2094 0.5156 31 1 0.8606 -2.6184 0.5152 32 1 1.0041 -4.8900 -0.9273 33 1 1.4328 -6.6058 -4.2008 34 1 1.7284 -6.7677 -2.4161 35 1 -1.0335 -7.0210 -4.8809 36 1 -0.6672 -8.3160 -3.7160 37 1 -2.8460 -6.8168 -2.7248 38 1 -6.0961 -7.5314 -2.4946 39 1 -1.0944 -4.2316 -2.9327 40 1 -0.5553 -4.8187 -4.5654 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675812816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:20 Heat of formation + Delta-G solvation = 55.490150 kcal Electronic energy + Delta-G solvation = -22711.688756 eV Core-core repulsion = 19144.661296 eV Total energy + Delta-G solvation = -3567.027460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64271 -41.23375 -39.51335 -36.32881 -35.64595 -34.59278 -34.36806 -32.79233 -30.59593 -29.64998 -28.34056 -26.58059 -25.29715 -23.97693 -22.93745 -22.35436 -21.36688 -20.28571 -19.04021 -18.46638 -17.99812 -17.10557 -16.89448 -16.69158 -16.39161 -15.86936 -15.69464 -15.31991 -15.15670 -15.05914 -14.75797 -14.42994 -14.25491 -13.94658 -13.64636 -13.41749 -13.21838 -13.07463 -12.89357 -12.85806 -12.66554 -12.60515 -12.21216 -12.14000 -11.89885 -11.69886 -11.67922 -11.31085 -11.12168 -11.03611 -10.81561 -10.05812 -8.94083 -7.92628 -5.19879 -0.57904 0.85265 1.46674 1.48675 1.49335 1.51463 1.57545 1.98846 2.18796 2.58371 2.79655 3.40417 3.45090 3.63494 3.63932 3.77353 3.90132 3.98036 4.01152 4.14915 4.37058 4.38717 4.49016 4.61762 4.62758 4.70214 4.81535 4.89973 4.94149 4.97043 5.03832 5.08196 5.20527 5.31198 5.39435 5.51926 5.70802 5.80397 6.30866 6.48838 7.16869 7.37310 8.15641 8.38322 9.30570 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.002565 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.665350 B =10913.026555 C =11602.629195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.097 3.903 3 N -0.309 5.309 4 O -0.017 6.017 5 N -0.291 5.291 6 C 0.106 3.894 7 C -0.076 4.076 8 C 0.522 3.478 9 O -0.583 6.583 10 N -0.690 5.690 11 C 0.127 3.873 12 H 0.089 0.911 13 C -0.119 4.119 14 C -0.110 4.110 15 H 0.095 0.905 16 C 0.158 3.842 17 N -0.743 5.743 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.281 1.281 26 C -0.141 4.141 27 H 0.131 0.869 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.422 0.578 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.061 0.939 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 8.898 9.342 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 N -0.058 5.058 4 O -0.150 6.150 5 N -0.036 5.036 6 C -0.079 4.079 7 C -0.116 4.116 8 C 0.308 3.692 9 O -0.463 6.463 10 N -0.342 5.342 11 C 0.021 3.979 12 H 0.107 0.893 13 C -0.158 4.158 14 C -0.128 4.128 15 H 0.113 0.887 16 C 0.032 3.968 17 N -0.386 5.386 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.207 1.207 26 C -0.180 4.180 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.175 0.825 31 H 0.197 0.803 32 H 0.260 0.740 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.981 10.150 8.571 20.023 hybrid contribution -1.517 -0.855 -0.214 1.755 sum 13.464 9.295 8.357 18.372 Atomic orbital electron populations 1.20884 0.81068 1.06419 1.06987 1.25257 1.02020 0.88097 0.93195 1.79898 0.88729 1.20901 1.16233 1.93355 1.21604 1.14101 1.85988 1.79838 1.19132 0.91064 1.13605 1.24376 0.89317 0.99391 0.94792 1.20635 1.08573 0.87126 0.95284 1.20547 0.75955 0.81803 0.90916 1.90782 1.51946 1.55785 1.47811 1.45461 1.66100 1.13935 1.08656 1.21730 0.96485 0.95997 0.83727 0.89330 1.23231 0.94761 0.93585 1.04198 1.22705 0.95885 0.94396 0.99852 0.88698 1.20835 0.83595 0.96500 0.95907 1.42541 1.05008 1.49503 1.41552 1.19595 0.90484 1.15658 1.12119 0.91024 1.25503 0.98824 1.02141 1.00170 1.69776 1.15086 1.44411 1.32513 0.85276 0.77993 0.78925 0.77963 1.20414 1.22093 1.20704 1.23396 0.96627 0.96748 1.01224 0.85058 0.88983 0.87377 0.82543 0.80329 0.74012 0.88240 0.88680 0.96646 0.96253 0.79297 0.93999 0.92019 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.05 71.24 0.72 -0.12 16 2 C 0.10 1.75 7.19 43.49 0.31 2.06 16 3 N -0.31 -7.71 12.98 -47.15 -0.61 -8.32 16 4 O -0.02 -0.49 13.71 70.17 0.96 0.47 16 5 N -0.29 -7.27 12.98 -47.15 -0.61 -7.88 16 6 C 0.11 1.90 5.68 43.49 0.25 2.15 16 7 C -0.08 -0.65 5.87 29.10 0.17 -0.48 16 8 C 0.52 8.84 7.82 87.66 0.69 9.53 16 9 O -0.58 -16.32 15.63 -3.02 -0.05 -16.37 16 10 N -0.69 -9.74 5.26 -440.04 -2.32 -12.05 16 11 C 0.13 2.48 4.32 45.52 0.20 2.68 16 12 H 0.09 2.04 7.47 -2.39 -0.02 2.02 16 13 C -0.12 -2.18 7.39 31.12 0.23 -1.95 16 14 C -0.11 -2.81 3.63 -10.27 -0.04 -2.85 16 15 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 16 C 0.16 5.75 6.10 86.38 0.53 6.27 16 17 N -0.74 -35.91 5.60 -343.46 -1.92 -37.84 16 18 C -0.25 -13.44 9.99 84.03 0.84 -12.60 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -57.27 13.06 21.65 0.28 -56.98 16 22 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C -0.14 -3.54 7.43 31.12 0.23 -3.31 16 27 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.11 0.71 7.77 -2.39 -0.02 0.69 16 30 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.18 -0.11 7.77 -2.39 -0.02 -0.13 16 32 H 0.42 3.23 8.70 -92.70 -0.81 2.42 16 33 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.02 0.58 7.85 -2.39 -0.02 0.57 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.38 19.03 7.67 -92.71 -0.71 18.32 16 38 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.17 7.90 -2.39 -0.02 2.15 16 Total: -1.00 -79.97 347.44 1.91 -78.06 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.44 Total: 16.15 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.59 Total: -2.30 kcal Atomic # 7 Polarization: -117.90 SS G_CDS: -5.18 Total: -123.08 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.91 Total: -15.90 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.97 1.91 -78.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675812816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.547 kcal (2) G-P(sol) polarization free energy of solvation -79.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds