Wall clock time and date at job start Tue Mar 31 2020 03:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 C 1.53007 * 109.46999 * 119.99617 * 2 1 3 5 5 C 1.52992 * 109.47321 * 184.99830 * 4 2 1 6 6 N 1.46497 * 109.47559 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00394 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00254 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00071 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99852 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99996 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47140 * 119.99719 * 11 9 7 14 14 H 1.48500 * 109.47029 * 239.99820 * 11 9 7 15 15 N 1.46494 * 109.47228 * 239.99413 * 2 1 3 16 16 C 1.34785 * 119.99916 * 85.00170 * 15 2 1 17 17 O 1.21462 * 119.99823 * 0.02562 * 16 15 2 18 18 C 1.48557 * 120.00133 * 180.02562 * 16 15 2 19 19 C 1.37916 * 120.21058 * 180.02562 * 18 16 15 20 20 C 1.41616 * 118.33012 * 179.71836 * 19 18 16 21 21 O 1.21915 * 120.71097 * 180.29341 * 20 19 18 22 22 N 1.34978 * 118.57576 * 0.49616 * 20 19 18 23 23 C 1.46499 * 119.89715 * 179.79017 * 22 20 19 24 24 C 1.34787 * 120.20993 * 359.51487 * 22 20 19 25 25 N 1.30424 * 121.82452 * 0.23027 * 24 22 20 26 26 H 1.09002 * 109.47459 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47623 * 300.00280 * 1 2 3 28 28 H 1.08996 * 109.47226 * 60.00403 * 1 2 3 29 29 H 1.08999 * 109.47138 * 305.00134 * 4 2 1 30 30 H 1.09002 * 109.46767 * 65.00106 * 4 2 1 31 31 H 1.08999 * 109.47263 * 300.00227 * 5 4 2 32 32 H 1.08998 * 109.46901 * 59.99896 * 5 4 2 33 33 H 0.97008 * 119.99686 * 0.02562 * 6 5 4 34 34 H 0.96997 * 119.99666 * 179.97438 * 10 9 7 35 35 H 0.97005 * 120.00420 * 265.00039 * 15 2 1 36 36 H 1.08008 * 120.83332 * 359.97438 * 19 18 16 37 37 H 1.09002 * 109.47391 * 179.72505 * 23 22 20 38 38 H 1.09001 * 109.46813 * 59.72561 * 23 22 20 39 39 H 1.09004 * 109.47041 * 299.72688 * 23 22 20 40 40 H 1.07996 * 119.08441 * 180.24983 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5647 -0.6133 1.3138 6 7 4.0531 -1.3043 2.5097 7 6 5.3951 -1.3404 2.7796 8 1 6.0936 -0.8597 2.1107 9 6 5.8579 -1.9957 3.9125 10 7 5.0066 -2.5819 4.7275 11 14 7.6886 -2.0454 4.2804 12 1 8.4270 -1.3175 3.2173 13 1 7.9474 -1.4014 5.5931 14 1 8.1468 -3.4574 4.3227 15 7 2.0183 -0.6907 -1.1960 16 6 2.1471 -0.0184 -2.3571 17 8 1.8587 1.1602 -2.4116 18 6 2.6417 -0.7189 -3.5702 19 6 2.7757 -0.0351 -4.7604 20 6 3.2565 -0.7404 -5.8903 21 8 3.3967 -0.1773 -6.9625 22 7 3.5523 -2.0505 -5.7558 23 6 4.0474 -2.8093 -6.9070 24 6 3.3989 -2.6615 -4.5642 25 7 2.9620 -2.0223 -3.5147 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 3.9994 -1.0729 0.4262 32 1 3.8531 0.4369 1.3574 33 1 3.4258 -1.7364 3.1104 34 1 5.3301 -3.0401 5.5189 35 1 2.2490 -1.6319 -1.1525 36 1 2.5241 1.0131 -4.8279 37 1 4.2350 -3.8408 -6.6089 38 1 4.9736 -2.3609 -7.2665 39 1 3.3021 -2.7906 -7.7022 40 1 3.6449 -3.7094 -4.4761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699110970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:46 Heat of formation + Delta-G solvation = -18.538014 kcal Electronic energy + Delta-G solvation = -22958.443611 eV Core-core repulsion = 19388.206049 eV Total energy + Delta-G solvation = -3570.237562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.13816 -39.86607 -37.93739 -36.65671 -35.59431 -34.37577 -31.96212 -31.38595 -30.68789 -28.53354 -27.87049 -25.21599 -24.77137 -23.91356 -21.88392 -21.11085 -20.51854 -19.04052 -18.10526 -17.47879 -17.00712 -16.83666 -16.28324 -15.96930 -15.14349 -14.84755 -14.63675 -14.42008 -13.84886 -13.72188 -13.64597 -13.53706 -13.30915 -13.27419 -13.15534 -12.84400 -12.41037 -11.88202 -11.21970 -11.04337 -10.93431 -10.83611 -10.79280 -10.63518 -10.60534 -10.55316 -10.03646 -10.00172 -9.70379 -9.08866 -8.90552 -8.85498 -6.91826 -5.76754 -3.05189 -0.04926 1.28143 1.97478 2.55744 2.93244 3.42572 3.43015 3.48967 3.51130 3.54646 4.05188 4.13842 4.48335 4.57547 4.71733 4.80876 4.93372 5.01846 5.10371 5.22547 5.32918 5.35460 5.55571 5.71834 5.75556 5.81146 5.93295 6.01462 6.08554 6.23551 6.28094 6.33748 6.48574 6.83013 6.86791 7.16978 7.35378 7.53988 7.71041 8.09108 8.42432 9.53582 10.11436 10.46221 11.46290 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.003366 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.641189 B = 8315.823569 C = 9604.051933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.134 4.134 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.292 1.292 15 N -0.693 5.693 16 C 0.568 3.432 17 O -0.527 6.527 18 C 0.133 3.867 19 C -0.214 4.214 20 C 0.517 3.483 21 O -0.528 6.528 22 N -0.525 5.525 23 C 0.061 3.939 24 C 0.375 3.625 25 N -0.523 5.523 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.413 0.587 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -3.282 -20.898 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.219 1.219 15 N -0.344 5.344 16 C 0.352 3.648 17 O -0.403 6.403 18 C 0.012 3.988 19 C -0.241 4.241 20 C 0.316 3.684 21 O -0.405 6.405 22 N -0.243 5.243 23 C -0.081 4.081 24 C 0.091 3.909 25 N -0.246 5.246 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.250 0.750 36 H 0.187 0.813 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.631 -2.252 -20.831 22.299 hybrid contribution 1.101 -0.399 -0.180 1.184 sum -6.531 -2.651 -21.011 22.162 Atomic orbital electron populations 1.22163 0.95126 1.02202 1.02445 1.21102 0.93799 0.97805 0.83528 0.89082 1.22065 0.98104 1.00918 0.96176 1.20644 0.90359 0.95633 0.90828 1.42365 1.05383 1.64903 1.25136 1.19278 0.83861 1.28268 1.05458 0.91219 1.24738 0.97686 1.00954 0.97692 1.69670 1.32660 1.40772 1.15183 0.86120 0.85126 0.77196 0.77798 1.20586 1.21849 1.21868 1.45997 1.64662 1.14952 1.08772 1.17782 0.78424 0.86034 0.82603 1.90794 1.50199 1.14843 1.84468 1.21490 0.93519 0.89536 0.94305 1.23457 1.05715 1.03813 0.91100 1.17305 0.80140 0.80653 0.90322 1.90962 1.54353 1.66770 1.28384 1.46737 1.52908 1.12204 1.12488 1.22234 1.01731 0.96438 0.87712 1.25020 0.87703 0.99300 0.78922 1.68303 1.19791 1.09067 1.27427 0.92349 0.91287 0.92375 0.90055 0.91166 0.96238 0.96432 0.78309 0.93588 0.74992 0.81263 0.88475 0.89568 0.89624 0.77190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.48 16 2 C 0.14 1.90 2.57 -67.93 -0.17 1.72 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.05 6.15 -4.05 -0.02 3.02 16 6 N -0.73 -18.52 5.60 -59.92 -0.34 -18.86 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 11 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 N -0.69 -9.01 4.52 -54.52 -0.25 -9.26 16 16 C 0.57 8.00 7.79 -12.00 -0.09 7.90 16 17 O -0.53 -8.80 16.03 5.40 0.09 -8.71 16 18 C 0.13 1.61 6.77 -82.63 -0.56 1.05 16 19 C -0.21 -2.63 9.67 -38.41 -0.37 -3.00 16 20 C 0.52 6.04 7.47 -14.88 -0.11 5.93 16 21 O -0.53 -7.73 17.18 5.00 0.09 -7.64 16 22 N -0.52 -3.90 2.97 -128.42 -0.38 -4.28 16 23 C 0.06 0.23 10.13 59.85 0.61 0.83 16 24 C 0.38 2.34 11.48 -90.67 -1.04 1.30 16 25 N -0.52 -5.11 9.64 -10.83 -0.10 -5.22 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.41 5.01 7.97 -40.82 -0.33 4.69 16 36 H 0.17 2.16 7.68 -52.48 -0.40 1.75 16 37 H 0.10 -0.01 7.71 -51.93 -0.40 -0.41 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.21 0.24 7.79 -52.49 -0.41 -0.17 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -36.57 347.17 -7.33 -43.90 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.57 Total: 7.12 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.79 Total: 7.74 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.34 Total: -65.03 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.17 Total: -16.35 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.57 -7.33 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699110970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.359 kcal (2) G-P(sol) polarization free energy of solvation -36.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds