Wall clock time and date at job start Tue Mar 31 2020 04:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.52996 * 109.46909 * 240.00397 * 2 1 3 5 5 N 1.46500 * 109.47137 * 185.00065 * 4 2 1 6 6 C 1.36936 * 120.00371 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99726 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00163 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00251 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00146 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47632 * 89.99714 * 10 8 6 12 12 H 1.48507 * 109.47328 * 209.99674 * 10 8 6 13 13 H 1.48504 * 109.47217 * 329.99578 * 10 8 6 14 14 N 1.46492 * 109.46905 * 120.00346 * 2 1 3 15 15 C 1.34779 * 119.99942 * 274.99669 * 14 2 1 16 16 O 1.21672 * 120.00255 * 355.11216 * 15 14 2 17 17 C 1.46771 * 119.99799 * 175.11025 * 15 14 2 18 18 C 1.36941 * 126.93529 * 185.93466 * 17 15 14 19 19 N 1.33569 * 107.86519 * 179.97438 * 18 17 15 20 20 C 1.30246 * 109.64882 * 359.97438 * 19 18 17 21 21 N 1.35179 * 108.97375 * 359.79130 * 20 19 18 22 22 C 1.46506 * 123.69573 * 179.50532 * 21 20 19 23 23 C 1.53471 * 108.19099 * 344.29752 * 22 21 20 24 24 O 1.43038 * 109.60921 * 47.91648 * 23 22 21 25 25 C 1.43429 * 114.05734 * 290.03364 * 24 23 22 26 26 H 1.08999 * 109.47329 * 299.99951 * 1 2 3 27 27 H 1.09007 * 109.47438 * 59.99810 * 1 2 3 28 28 H 1.09000 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47166 * 305.00071 * 4 2 1 30 30 H 1.08994 * 109.47550 * 65.00028 * 4 2 1 31 31 H 0.97001 * 120.00127 * 0.02562 * 5 4 2 32 32 H 0.96995 * 120.00685 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00479 * 94.99981 * 14 2 1 34 34 H 1.08003 * 126.07056 * 359.95399 * 18 17 15 35 35 H 1.09007 * 109.89719 * 224.50744 * 22 21 20 36 36 H 1.09003 * 109.54330 * 103.88733 * 22 21 20 37 37 H 1.09000 * 109.44889 * 287.87332 * 23 22 21 38 38 H 1.09001 * 109.42829 * 167.94338 * 23 22 21 39 39 H 1.08990 * 109.79028 * 290.05571 * 25 24 23 40 40 H 1.08995 * 109.83946 * 169.23793 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8438 -3.0517 8 6 5.5672 -1.5379 -2.1515 9 7 6.2244 -2.1260 -3.1284 10 14 6.4961 -0.8366 -0.6905 11 1 6.6278 -1.8788 0.3591 12 1 7.8469 -0.3996 -1.1262 13 1 5.7524 0.3263 -0.1429 14 7 2.0183 -0.6906 1.1961 15 6 2.1470 -0.0183 2.3571 16 8 1.9433 1.1807 2.3916 17 6 2.5329 -0.7326 3.5798 18 6 2.5950 -0.2193 4.8478 19 7 2.9879 -1.1982 5.6673 20 6 3.1740 -2.2921 4.9853 21 7 2.8984 -2.0510 3.6841 22 6 3.0123 -3.0606 2.6286 23 6 3.8419 -4.2314 3.1729 24 8 3.3521 -4.6079 4.4630 25 6 3.6164 -3.6451 5.4927 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1369 31 1 3.9824 -0.4628 -0.4316 32 1 7.1911 -2.1957 -3.0897 33 1 2.2490 -1.6318 1.1525 34 1 2.3671 0.7967 5.1344 35 1 3.5079 -2.6321 1.7573 36 1 2.0184 -3.4116 2.3508 37 1 4.8859 -3.9291 3.2552 38 1 3.7622 -5.0794 2.4928 39 1 4.6833 -3.6253 5.7143 40 1 3.0573 -3.9026 6.3922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699366121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:01 Heat of formation + Delta-G solvation = 4.406014 kcal Electronic energy + Delta-G solvation = -24514.481340 eV Core-core repulsion = 20945.238706 eV Total energy + Delta-G solvation = -3569.242634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.74446 -39.57474 -38.59902 -36.47530 -34.73412 -33.77436 -31.72070 -30.96921 -30.46026 -29.94095 -26.49955 -26.09932 -24.38544 -23.36695 -22.18518 -20.87637 -20.62239 -19.96491 -18.27877 -17.75124 -17.20983 -16.48904 -16.15372 -15.80234 -15.52391 -15.32161 -14.91402 -14.52369 -14.36151 -14.16417 -14.01557 -13.44028 -13.07740 -12.98707 -12.78465 -12.51771 -12.45275 -12.19425 -11.98544 -11.65960 -11.25509 -11.04543 -10.72887 -10.65372 -10.38484 -10.29871 -10.01593 -9.93941 -9.75481 -9.15355 -9.06228 -8.61953 -7.42788 -5.92561 -3.29714 1.12906 2.15836 2.59337 3.08801 3.18942 3.20933 3.29399 3.30419 3.33229 3.73960 4.00749 4.36728 4.43077 4.49776 4.63285 4.87460 4.91119 5.04131 5.05581 5.15275 5.20474 5.21347 5.34122 5.39335 5.43944 5.67142 5.75325 5.78576 5.91386 6.17045 6.20161 6.26119 6.42671 6.44356 6.62794 6.70243 7.41644 7.69992 7.82002 8.12747 8.26008 9.03510 9.75778 9.94876 11.25354 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.006152 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.945049 B = 4550.416238 C = 5648.971663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.093 0.907 4 C 0.148 3.852 5 N -0.756 5.756 6 C -0.249 4.249 7 H 0.093 0.907 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.877 3.123 11 H -0.286 1.286 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.719 5.719 15 C 0.594 3.406 16 O -0.527 6.527 17 C -0.073 4.073 18 C 0.060 3.940 19 N -0.481 5.481 20 C 0.188 3.812 21 N -0.436 5.436 22 C 0.052 3.948 23 C 0.049 3.951 24 O -0.369 6.369 25 C 0.147 3.853 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.361 0.639 32 H 0.261 0.739 33 H 0.397 0.603 34 H 0.187 0.813 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 -3.958 14.756 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.111 0.889 4 C 0.020 3.980 5 N -0.403 5.403 6 C -0.379 4.379 7 H 0.110 0.890 8 C -0.186 4.186 9 N -0.576 5.576 10 Si 0.707 3.293 11 H -0.213 1.213 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.372 5.372 15 C 0.380 3.620 16 O -0.403 6.403 17 C -0.189 4.189 18 C -0.093 4.093 19 N -0.200 5.200 20 C -0.075 4.075 21 N -0.121 5.121 22 C -0.071 4.071 23 C -0.028 4.028 24 O -0.286 6.286 25 C 0.069 3.931 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.194 0.806 32 H 0.071 0.929 33 H 0.235 0.765 34 H 0.204 0.796 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.107 0.893 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.738 -3.436 15.206 17.871 hybrid contribution 0.960 0.335 -0.158 1.029 sum -7.777 -3.101 15.049 17.221 Atomic orbital electron populations 1.22098 0.94796 1.02148 1.02564 1.21414 0.94006 0.98287 0.84024 0.88942 1.20987 0.85477 0.97655 0.93843 1.42744 1.01302 1.71369 1.24854 1.19046 0.89882 1.29453 0.99478 0.88952 1.24644 0.96128 1.00391 0.97471 1.69682 1.07467 1.48139 1.32321 0.86682 0.80260 0.79140 0.83233 1.21282 1.21333 1.20330 1.46305 1.66916 1.14390 1.09620 1.16826 0.77214 0.86412 0.81590 1.90829 1.51280 1.13068 1.85143 1.21158 1.15375 0.84328 0.98028 1.22715 1.00514 0.99189 0.86919 1.69843 1.18891 0.98394 1.32880 1.24164 1.03947 0.98574 0.80801 1.45300 1.48952 1.08814 1.09031 1.23068 1.04278 0.88923 0.90789 1.23042 0.97073 0.97281 0.85428 1.88172 1.80329 1.42788 1.17282 1.21339 1.01677 0.79016 0.91080 0.92286 0.91093 0.92424 0.94874 0.93578 0.80579 0.92878 0.76536 0.79601 0.86904 0.87733 0.90926 0.85228 0.89329 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16 2 C 0.13 1.94 2.77 -67.94 -0.19 1.75 16 3 H 0.09 1.59 7.51 -51.93 -0.39 1.20 16 4 C 0.15 2.59 5.82 -4.04 -0.02 2.56 16 5 N -0.76 -16.75 5.24 -59.91 -0.31 -17.06 16 6 C -0.25 -6.62 10.47 -15.06 -0.16 -6.78 16 7 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 8 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 9 N -0.93 -27.96 13.97 55.49 0.78 -27.19 16 10 Si 0.88 21.43 27.73 -169.99 -4.71 16.72 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 14 N -0.72 -10.84 4.50 -55.09 -0.25 -11.09 16 15 C 0.59 9.77 7.75 -12.81 -0.10 9.67 16 16 O -0.53 -9.98 16.55 5.21 0.09 -9.89 16 17 C -0.07 -1.10 6.95 -82.48 -0.57 -1.68 16 18 C 0.06 0.89 11.68 -17.27 -0.20 0.68 16 19 N -0.48 -6.89 11.19 -10.29 -0.12 -7.01 16 20 C 0.19 2.39 7.78 -155.30 -1.21 1.18 16 21 N -0.44 -5.72 3.16 -109.65 -0.35 -6.07 16 22 C 0.05 0.55 5.59 -3.79 -0.02 0.53 16 23 C 0.05 0.44 6.83 37.40 0.26 0.70 16 24 O -0.37 -3.57 10.78 -35.23 -0.38 -3.95 16 25 C 0.15 1.33 7.29 36.21 0.26 1.59 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.36 8.14 5.20 -40.82 -0.21 7.92 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.40 5.49 4.80 -40.82 -0.20 5.29 16 34 H 0.19 2.42 8.06 -52.48 -0.42 1.99 16 35 H 0.11 1.34 6.72 -51.92 -0.35 0.99 16 36 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -33.64 331.73 -7.34 -40.98 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.38 Total: 10.77 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.70 Total: 8.80 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -0.25 Total: -68.42 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.29 Total: -13.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.64 -7.34 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699366121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.381 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds