Wall clock time and date at job start Tue Mar 31 2020 04:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.52996 * 109.46909 * 240.00397 * 2 1 3 5 5 N 1.46500 * 109.47137 * 185.00065 * 4 2 1 6 6 C 1.36936 * 120.00371 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99726 * 0.02562 * 6 5 4 8 8 C 1.38805 * 120.00163 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00251 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00146 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47632 * 89.99714 * 10 8 6 12 12 H 1.48507 * 109.47328 * 209.99674 * 10 8 6 13 13 H 1.48504 * 109.47217 * 329.99578 * 10 8 6 14 14 N 1.46492 * 109.46905 * 120.00346 * 2 1 3 15 15 C 1.34779 * 119.99942 * 274.99669 * 14 2 1 16 16 O 1.21672 * 120.00255 * 355.11216 * 15 14 2 17 17 C 1.46771 * 119.99799 * 175.11025 * 15 14 2 18 18 C 1.36941 * 126.93529 * 185.93466 * 17 15 14 19 19 N 1.33569 * 107.86519 * 179.97438 * 18 17 15 20 20 C 1.30246 * 109.64882 * 359.97438 * 19 18 17 21 21 N 1.35179 * 108.97375 * 359.79130 * 20 19 18 22 22 C 1.46506 * 123.69573 * 179.50532 * 21 20 19 23 23 C 1.53471 * 108.19099 * 344.29752 * 22 21 20 24 24 O 1.43038 * 109.60921 * 47.91648 * 23 22 21 25 25 C 1.43429 * 114.05734 * 290.03364 * 24 23 22 26 26 H 1.08999 * 109.47329 * 299.99951 * 1 2 3 27 27 H 1.09007 * 109.47438 * 59.99810 * 1 2 3 28 28 H 1.09000 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47166 * 305.00071 * 4 2 1 30 30 H 1.08994 * 109.47550 * 65.00028 * 4 2 1 31 31 H 0.97001 * 120.00127 * 0.02562 * 5 4 2 32 32 H 0.96995 * 120.00685 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00479 * 94.99981 * 14 2 1 34 34 H 1.08003 * 126.07056 * 359.95399 * 18 17 15 35 35 H 1.09007 * 109.89719 * 224.50744 * 22 21 20 36 36 H 1.09003 * 109.54330 * 103.88733 * 22 21 20 37 37 H 1.09000 * 109.44889 * 287.87332 * 23 22 21 38 38 H 1.09001 * 109.42829 * 167.94338 * 23 22 21 39 39 H 1.08990 * 109.79028 * 290.05571 * 25 24 23 40 40 H 1.08995 * 109.83946 * 169.23793 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4387 -2.2068 7 1 3.6467 -1.8438 -3.0517 8 6 5.5672 -1.5379 -2.1515 9 7 6.2244 -2.1260 -3.1284 10 14 6.4961 -0.8366 -0.6905 11 1 6.6278 -1.8788 0.3591 12 1 7.8469 -0.3996 -1.1262 13 1 5.7524 0.3263 -0.1429 14 7 2.0183 -0.6906 1.1961 15 6 2.1470 -0.0183 2.3571 16 8 1.9433 1.1807 2.3916 17 6 2.5329 -0.7326 3.5798 18 6 2.5950 -0.2193 4.8478 19 7 2.9879 -1.1982 5.6673 20 6 3.1740 -2.2921 4.9853 21 7 2.8984 -2.0510 3.6841 22 6 3.0123 -3.0606 2.6286 23 6 3.8419 -4.2314 3.1729 24 8 3.3521 -4.6079 4.4630 25 6 3.6164 -3.6451 5.4927 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1369 31 1 3.9824 -0.4628 -0.4316 32 1 7.1911 -2.1957 -3.0897 33 1 2.2490 -1.6318 1.1525 34 1 2.3671 0.7967 5.1344 35 1 3.5079 -2.6321 1.7573 36 1 2.0184 -3.4116 2.3508 37 1 4.8859 -3.9291 3.2552 38 1 3.7622 -5.0794 2.4928 39 1 4.6833 -3.6253 5.7143 40 1 3.0573 -3.9026 6.3922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699366121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:00 Heat of formation + Delta-G solvation = -20.513566 kcal Electronic energy + Delta-G solvation = -24515.561934 eV Core-core repulsion = 20945.238706 eV Total energy + Delta-G solvation = -3570.323228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.74658 -40.82333 -39.39002 -37.91342 -35.91486 -35.27738 -33.39169 -32.29296 -31.50298 -30.92282 -27.70404 -27.35226 -25.27518 -24.58387 -23.89249 -22.05816 -21.85844 -20.93109 -19.83461 -19.09338 -18.15199 -17.55452 -17.35337 -16.76357 -16.70504 -16.35985 -16.25446 -15.87307 -15.71788 -15.33338 -15.08053 -14.87968 -14.46269 -14.25454 -13.97460 -13.87023 -13.76973 -13.32931 -12.96360 -12.94295 -12.70713 -12.39122 -12.30323 -11.96512 -11.83054 -11.77209 -11.30759 -11.21116 -11.06201 -10.88994 -10.38482 -9.67586 -9.38115 -8.07900 -5.41467 0.03340 1.21827 1.24810 1.33234 1.37193 1.53798 1.90710 2.08924 2.38909 2.53509 2.90296 3.16953 3.23686 3.33903 3.50596 3.73533 3.76220 3.86303 4.02570 4.18335 4.21889 4.26082 4.33398 4.41212 4.50280 4.61918 4.69236 4.76144 4.78321 4.86779 5.00802 5.23126 5.25260 5.36699 5.62481 5.72087 5.79322 6.15520 6.22099 6.65669 6.89590 7.00511 7.75489 7.93239 9.13213 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.006152 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.945049 B = 4550.416238 C = 5648.971663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 H 0.072 0.928 4 C 0.147 3.853 5 N -0.759 5.759 6 C -0.229 4.229 7 H 0.068 0.932 8 C -0.050 4.050 9 N -0.976 5.976 10 Si 0.937 3.063 11 H -0.267 1.267 12 H -0.298 1.298 13 H -0.275 1.275 14 N -0.713 5.713 15 C 0.594 3.406 16 O -0.560 6.560 17 C -0.096 4.096 18 C 0.055 3.945 19 N -0.500 5.500 20 C 0.194 3.806 21 N -0.438 5.438 22 C 0.045 3.955 23 C 0.050 3.950 24 O -0.372 6.372 25 C 0.146 3.854 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.361 0.639 32 H 0.258 0.742 33 H 0.404 0.596 34 H 0.193 0.807 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.153 0.847 39 H 0.109 0.891 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 -4.974 16.255 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.029 3.971 3 H 0.091 0.909 4 C 0.021 3.979 5 N -0.404 5.404 6 C -0.360 4.360 7 H 0.086 0.914 8 C -0.242 4.242 9 N -0.626 5.626 10 Si 0.766 3.234 11 H -0.192 1.192 12 H -0.224 1.224 13 H -0.201 1.201 14 N -0.367 5.367 15 C 0.381 3.619 16 O -0.438 6.438 17 C -0.212 4.212 18 C -0.099 4.099 19 N -0.220 5.220 20 C -0.070 4.070 21 N -0.122 5.122 22 C -0.076 4.076 23 C -0.027 4.027 24 O -0.288 6.288 25 C 0.068 3.932 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.193 0.807 32 H 0.068 0.932 33 H 0.243 0.757 34 H 0.210 0.790 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.170 0.830 39 H 0.127 0.873 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.463 -4.475 16.714 19.722 hybrid contribution 1.089 0.622 -0.651 1.413 sum -8.373 -3.854 16.064 18.521 Atomic orbital electron populations 1.22025 0.92104 1.03402 1.03113 1.21318 0.95948 0.96767 0.83095 0.90946 1.21163 0.82779 0.98856 0.95122 1.42753 1.03194 1.70831 1.23659 1.19035 0.89924 1.27750 0.99265 0.91374 1.25276 0.97177 1.01694 1.00057 1.69833 1.07531 1.50583 1.34649 0.85698 0.78215 0.78849 0.80638 1.19239 1.22436 1.20097 1.46274 1.66541 1.14651 1.09220 1.16980 0.76675 0.86083 0.82140 1.90803 1.52931 1.14417 1.85698 1.20990 1.17147 0.85505 0.97513 1.22956 1.00133 0.99772 0.87086 1.69862 1.19935 0.98936 1.33263 1.24958 1.02020 0.99444 0.80537 1.45445 1.48550 1.08421 1.09778 1.23295 1.05518 0.88826 0.89994 1.23171 0.96590 0.97329 0.85630 1.88179 1.80458 1.42692 1.17520 1.21693 1.03162 0.76927 0.91390 0.92804 0.89493 0.90796 0.93128 0.93212 0.80668 0.93240 0.75710 0.79004 0.88135 0.86108 0.90903 0.82958 0.87305 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.13 3.88 2.77 44.99 0.12 4.00 16 3 H 0.07 2.44 7.51 -2.39 -0.02 2.42 16 4 C 0.15 4.88 5.82 86.38 0.50 5.39 16 5 N -0.76 -32.67 5.24 -343.47 -1.80 -34.47 16 6 C -0.23 -12.10 10.47 84.03 0.88 -11.22 16 7 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 8 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 9 N -0.98 -59.45 13.97 21.65 0.30 -59.15 16 10 Si 0.94 44.11 27.73 68.60 1.90 46.01 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 13 H -0.27 -12.68 6.52 99.48 0.65 -12.03 16 14 N -0.71 -20.58 4.50 -446.45 -2.01 -22.59 16 15 C 0.59 19.18 7.75 86.47 0.67 19.85 16 16 O -0.56 -21.20 16.55 -4.26 -0.07 -21.27 16 17 C -0.10 -2.81 6.95 40.23 0.28 -2.53 16 18 C 0.05 1.57 11.68 84.12 0.98 2.56 16 19 N -0.50 -13.68 11.19 -186.47 -2.09 -15.77 16 20 C 0.19 4.52 7.78 138.29 1.08 5.60 16 21 N -0.44 -10.74 3.16 -500.84 -1.58 -12.32 16 22 C 0.05 0.87 5.59 86.54 0.48 1.35 16 23 C 0.05 0.75 6.83 72.14 0.49 1.25 16 24 O -0.37 -6.01 10.78 -148.98 -1.61 -7.62 16 25 C 0.15 2.20 7.29 71.37 0.52 2.72 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.36 15.73 5.20 -92.71 -0.48 15.25 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.40 10.47 4.80 -92.71 -0.44 10.03 16 34 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.10 2.20 6.72 -2.38 -0.02 2.19 16 36 H 0.12 1.89 8.06 -2.39 -0.02 1.87 16 37 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.14 331.73 0.30 -71.84 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.09 Total: 31.33 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 7.16 Total: 24.01 kcal Atomic # 7 Polarization: -137.13 SS G_CDS: -7.18 Total: -144.31 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.68 Total: -28.89 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -72.14 0.30 -71.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699366121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.326 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds