Wall clock time and date at job start Tue Mar 31 2020 04:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47355 * 239.99655 * 2 1 3 5 5 N 1.46502 * 109.47223 * 184.99997 * 4 2 1 6 6 C 1.46496 * 119.99772 * 269.99993 * 5 4 2 7 7 C 1.36938 * 119.99983 * 90.00097 * 5 4 2 8 8 H 1.07997 * 120.00349 * 20.33537 * 7 5 4 9 9 C 1.38812 * 119.99823 * 200.33776 * 7 5 4 10 10 N 1.31619 * 120.00020 * 15.00073 * 9 7 5 11 11 Si 1.86802 * 119.99957 * 194.99881 * 9 7 5 12 12 H 1.48490 * 109.46770 * 85.00826 * 11 9 7 13 13 H 1.48501 * 109.46965 * 205.01071 * 11 9 7 14 14 H 1.48501 * 109.46820 * 325.00607 * 11 9 7 15 15 N 1.46502 * 109.47290 * 119.99531 * 2 1 3 16 16 C 1.34781 * 119.99961 * 275.00462 * 15 2 1 17 17 O 1.21675 * 119.99844 * 359.97438 * 16 15 2 18 18 C 1.46812 * 119.99869 * 179.72241 * 16 15 2 19 19 C 1.36353 * 125.84655 * 180.27583 * 18 16 15 20 20 C 1.41308 * 107.00738 * 180.02562 * 19 18 16 21 21 C 1.47384 * 126.46112 * 179.97438 * 20 19 18 22 22 N 1.34787 * 120.00161 * 180.02562 * 21 20 19 23 23 O 1.21612 * 120.00213 * 0.02562 * 21 20 19 24 24 C 1.38216 * 107.07465 * 359.97438 * 20 19 18 25 25 N 1.34267 * 108.39326 * 359.73465 * 24 20 19 26 26 H 0.97001 * 125.38646 * 180.26416 * 25 24 20 27 27 H 1.09004 * 109.47186 * 60.00405 * 1 2 3 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47294 * 300.00227 * 1 2 3 30 30 H 1.08999 * 109.47343 * 304.99801 * 4 2 1 31 31 H 1.08999 * 109.46885 * 65.00213 * 4 2 1 32 32 H 1.09004 * 109.47077 * 95.10179 * 6 5 4 33 33 H 1.09005 * 109.47178 * 215.09817 * 6 5 4 34 34 H 1.09001 * 109.47288 * 335.09775 * 6 5 4 35 35 H 0.97002 * 120.00312 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00131 * 94.99874 * 15 2 1 37 37 H 1.07998 * 126.49437 * 0.02562 * 19 18 16 38 38 H 0.97001 * 119.99290 * 359.97438 * 22 21 20 39 39 H 0.96998 * 119.99888 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.79582 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2340 -1.7612 7 6 4.0850 -1.9159 -0.6021 8 1 3.5232 -2.8299 -0.4792 9 6 5.4002 -1.8453 -0.1636 10 7 5.9898 -0.6754 -0.0370 11 14 6.3332 -3.4108 0.2468 12 1 6.9265 -3.9727 -0.9930 13 1 7.4140 -3.1028 1.2174 14 1 5.4005 -4.4011 0.8423 15 7 2.0184 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3572 17 8 1.8580 1.1626 2.4116 18 6 2.6307 -0.7115 3.5574 19 6 2.8003 -0.1518 4.7892 20 6 3.2800 -1.1702 5.6434 21 6 3.6090 -1.0312 7.0733 22 7 4.0601 -2.0948 7.7676 23 8 3.4735 0.0432 7.6268 24 6 3.3825 -2.3212 4.8850 25 7 2.9849 -2.0408 3.6336 26 1 2.9548 -2.6733 2.8988 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6055 -1.7199 -1.2950 31 1 1.7517 -0.1584 -2.1369 32 1 4.6151 0.9372 -0.9770 33 1 5.2332 -0.2045 -2.1948 34 1 3.7755 0.7584 -2.5364 35 1 6.9087 -0.6260 0.2698 36 1 2.2491 -1.6317 1.1528 37 1 2.6051 0.8751 5.0605 38 1 4.1678 -2.9518 7.3261 39 1 4.2769 -2.0031 8.7086 40 1 3.7201 -3.2836 5.2401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699470545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:58 Heat of formation + Delta-G solvation = -12.338130 kcal Electronic energy + Delta-G solvation = -24152.021023 eV Core-core repulsion = 20582.052308 eV Total energy + Delta-G solvation = -3569.968715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.35275 -39.04080 -38.45337 -36.33699 -34.08587 -33.63448 -31.69793 -30.98952 -30.33165 -28.82566 -26.25734 -25.71331 -23.52521 -22.93527 -21.59018 -20.19243 -19.86710 -19.42774 -18.75368 -16.96895 -16.73960 -16.18507 -15.66335 -15.37666 -15.07466 -14.88091 -14.32609 -13.90771 -13.82132 -13.51310 -13.34645 -13.23045 -12.96571 -12.83991 -12.30025 -12.19272 -11.92200 -11.48258 -11.40808 -10.98525 -10.84050 -10.49079 -10.34680 -10.18389 -10.03016 -9.95074 -9.67449 -9.51331 -8.96513 -8.69798 -8.48875 -8.12137 -6.91823 -5.86241 -3.31159 1.65768 2.03023 3.13100 3.15544 3.26499 3.30741 3.54695 3.59512 3.81865 3.97093 4.31376 4.85815 5.01395 5.22628 5.24034 5.35235 5.41646 5.59558 5.79858 5.91331 5.99296 6.09087 6.12819 6.16959 6.37056 6.45486 6.61259 6.67605 6.80018 6.81579 6.87718 7.15254 7.28849 7.33919 7.42122 7.55763 7.71145 8.15602 8.23014 8.39442 8.78859 9.06872 9.72444 10.22774 11.17388 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.005735 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.568189 B = 4881.152244 C = 6299.108525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 H 0.080 0.920 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.263 4.263 8 H 0.065 0.935 9 C 0.007 3.993 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.283 1.283 15 N -0.686 5.686 16 C 0.589 3.411 17 O -0.544 6.544 18 C -0.035 4.035 19 C -0.057 4.057 20 C -0.243 4.243 21 C 0.597 3.403 22 N -0.858 5.858 23 O -0.549 6.549 24 C 0.064 3.936 25 N -0.514 5.514 26 H 0.424 0.576 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.042 0.958 34 H -0.002 1.002 35 H 0.254 0.746 36 H 0.397 0.603 37 H 0.155 0.845 38 H 0.397 0.603 39 H 0.401 0.599 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -7.717 6.583 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.392 4.392 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.535 5.535 11 Si 0.725 3.275 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.335 5.335 16 C 0.375 3.625 17 O -0.422 6.422 18 C -0.147 4.147 19 C -0.082 4.082 20 C -0.253 4.253 21 C 0.384 3.616 22 N -0.421 5.421 23 O -0.427 6.427 24 C -0.079 4.079 25 N -0.108 5.108 26 H 0.263 0.737 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.064 0.936 36 H 0.232 0.768 37 H 0.173 0.827 38 H 0.226 0.774 39 H 0.231 0.769 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.965 -6.095 6.618 11.378 hybrid contribution 1.155 -2.109 0.092 2.407 sum -5.809 -8.205 6.710 12.086 Atomic orbital electron populations 1.22164 0.96696 1.01256 1.01792 1.21873 0.91897 0.98548 0.86593 0.90220 1.21191 0.85894 0.97880 0.93695 1.43890 0.98913 1.22663 1.66560 1.20805 0.92883 0.90423 0.94121 1.19007 0.96030 0.89819 1.34375 0.91766 1.24964 0.98518 0.96051 0.99752 1.70076 1.12854 1.21658 1.48871 0.86471 0.80127 0.82888 0.78047 1.21329 1.21736 1.20832 1.45590 1.65311 1.13843 1.08739 1.16944 0.77588 0.86139 0.81860 1.90783 1.51858 1.14772 1.84817 1.20335 1.13491 0.83889 0.96968 1.20983 0.98228 0.99344 0.89680 1.19481 1.16896 0.94937 0.94032 1.17435 0.75305 0.83378 0.85453 1.43682 1.70942 1.12953 1.14547 1.90807 1.53940 1.27028 1.70905 1.22288 1.01770 0.99406 0.84414 1.41814 1.48099 1.10173 1.10678 0.73708 0.92087 0.93083 0.92766 0.93391 0.92756 0.95189 0.93898 0.98313 0.93552 0.76838 0.82735 0.77448 0.76894 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.12 2.88 -67.93 -0.20 1.93 16 3 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 4 C 0.14 2.57 5.36 -4.04 -0.02 2.55 16 5 N -0.60 -13.54 2.82 -181.12 -0.51 -14.05 16 6 C 0.16 3.84 9.02 59.84 0.54 4.38 16 7 C -0.26 -6.24 8.02 -15.06 -0.12 -6.36 16 8 H 0.06 1.44 7.86 -52.49 -0.41 1.03 16 9 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 10 N -0.89 -24.45 10.67 55.49 0.59 -23.86 16 11 Si 0.89 19.62 29.58 -169.99 -5.03 14.59 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 N -0.69 -12.51 4.48 -55.07 -0.25 -12.76 16 16 C 0.59 11.72 7.76 -12.79 -0.10 11.62 16 17 O -0.54 -12.53 16.52 5.21 0.09 -12.44 16 18 C -0.03 -0.61 6.99 -82.41 -0.58 -1.18 16 19 C -0.06 -1.00 10.37 -39.09 -0.41 -1.41 16 20 C -0.24 -3.57 6.13 -105.02 -0.64 -4.21 16 21 C 0.60 8.60 8.09 -12.53 -0.10 8.50 16 22 N -0.86 -7.67 8.86 30.43 0.27 -7.40 16 23 O -0.55 -10.28 17.76 5.27 0.09 -10.18 16 24 C 0.06 0.74 11.43 -16.49 -0.19 0.55 16 25 N -0.51 -6.96 5.91 -9.30 -0.05 -7.01 16 26 H 0.42 4.99 8.14 -40.82 -0.33 4.66 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 32 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.04 1.09 7.21 -51.93 -0.37 0.71 16 34 H 0.00 -0.04 7.83 -51.93 -0.41 -0.44 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.40 6.78 6.48 -40.82 -0.26 6.52 16 37 H 0.15 2.87 8.06 -52.49 -0.42 2.44 16 38 H 0.40 2.26 7.74 -40.82 -0.32 1.94 16 39 H 0.40 3.01 8.93 -40.82 -0.36 2.64 16 40 H 0.18 1.14 7.44 -52.49 -0.39 0.75 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -34.19 341.79 -6.49 -40.68 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.29 Total: 12.79 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -1.55 Total: 14.49 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.05 Total: -65.07 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.18 Total: -22.63 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.19 -6.49 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699470545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.341 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds