Wall clock time and date at job start Tue Mar 31 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47355 * 239.99655 * 2 1 3 5 5 N 1.46502 * 109.47223 * 184.99997 * 4 2 1 6 6 C 1.46496 * 119.99772 * 269.99993 * 5 4 2 7 7 C 1.36938 * 119.99983 * 90.00097 * 5 4 2 8 8 H 1.07997 * 120.00349 * 20.33537 * 7 5 4 9 9 C 1.38812 * 119.99823 * 200.33776 * 7 5 4 10 10 N 1.31619 * 120.00020 * 15.00073 * 9 7 5 11 11 Si 1.86802 * 119.99957 * 194.99881 * 9 7 5 12 12 H 1.48490 * 109.46770 * 85.00826 * 11 9 7 13 13 H 1.48501 * 109.46965 * 205.01071 * 11 9 7 14 14 H 1.48501 * 109.46820 * 325.00607 * 11 9 7 15 15 N 1.46502 * 109.47290 * 119.99531 * 2 1 3 16 16 C 1.34781 * 119.99961 * 275.00462 * 15 2 1 17 17 O 1.21675 * 119.99844 * 359.97438 * 16 15 2 18 18 C 1.46812 * 119.99869 * 179.72241 * 16 15 2 19 19 C 1.36353 * 125.84655 * 180.27583 * 18 16 15 20 20 C 1.41308 * 107.00738 * 180.02562 * 19 18 16 21 21 C 1.47384 * 126.46112 * 179.97438 * 20 19 18 22 22 N 1.34787 * 120.00161 * 180.02562 * 21 20 19 23 23 O 1.21612 * 120.00213 * 0.02562 * 21 20 19 24 24 C 1.38216 * 107.07465 * 359.97438 * 20 19 18 25 25 N 1.34267 * 108.39326 * 359.73465 * 24 20 19 26 26 H 0.97001 * 125.38646 * 180.26416 * 25 24 20 27 27 H 1.09004 * 109.47186 * 60.00405 * 1 2 3 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47294 * 300.00227 * 1 2 3 30 30 H 1.08999 * 109.47343 * 304.99801 * 4 2 1 31 31 H 1.08999 * 109.46885 * 65.00213 * 4 2 1 32 32 H 1.09004 * 109.47077 * 95.10179 * 6 5 4 33 33 H 1.09005 * 109.47178 * 215.09817 * 6 5 4 34 34 H 1.09001 * 109.47288 * 335.09775 * 6 5 4 35 35 H 0.97002 * 120.00312 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00131 * 94.99874 * 15 2 1 37 37 H 1.07998 * 126.49437 * 0.02562 * 19 18 16 38 38 H 0.97001 * 119.99290 * 359.97438 * 22 21 20 39 39 H 0.96998 * 119.99888 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.79582 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2340 -1.7612 7 6 4.0850 -1.9159 -0.6021 8 1 3.5232 -2.8299 -0.4792 9 6 5.4002 -1.8453 -0.1636 10 7 5.9898 -0.6754 -0.0370 11 14 6.3332 -3.4108 0.2468 12 1 6.9265 -3.9727 -0.9930 13 1 7.4140 -3.1028 1.2174 14 1 5.4005 -4.4011 0.8423 15 7 2.0184 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3572 17 8 1.8580 1.1626 2.4116 18 6 2.6307 -0.7115 3.5574 19 6 2.8003 -0.1518 4.7892 20 6 3.2800 -1.1702 5.6434 21 6 3.6090 -1.0312 7.0733 22 7 4.0601 -2.0948 7.7676 23 8 3.4735 0.0432 7.6268 24 6 3.3825 -2.3212 4.8850 25 7 2.9849 -2.0408 3.6336 26 1 2.9548 -2.6733 2.8988 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.6055 -1.7199 -1.2950 31 1 1.7517 -0.1584 -2.1369 32 1 4.6151 0.9372 -0.9770 33 1 5.2332 -0.2045 -2.1948 34 1 3.7755 0.7584 -2.5364 35 1 6.9087 -0.6260 0.2698 36 1 2.2491 -1.6317 1.1528 37 1 2.6051 0.8751 5.0605 38 1 4.1678 -2.9518 7.3261 39 1 4.2769 -2.0031 8.7086 40 1 3.7201 -3.2836 5.2401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699470545.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:56 Heat of formation + Delta-G solvation = -40.583123 kcal Electronic energy + Delta-G solvation = -24153.245818 eV Core-core repulsion = 20582.052308 eV Total energy + Delta-G solvation = -3571.193510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.54751 -40.43346 -39.70341 -38.00189 -35.75897 -34.65365 -33.31116 -32.31575 -31.82686 -30.04544 -28.04882 -27.36904 -24.80853 -24.13937 -23.26629 -21.60371 -21.22495 -20.59383 -20.01880 -18.63400 -17.85508 -17.35058 -17.08457 -16.88412 -16.52616 -16.25308 -15.71388 -15.49949 -15.15060 -15.00609 -14.71246 -14.56591 -14.44896 -14.33106 -13.82945 -13.39247 -13.33814 -13.10772 -12.86381 -12.72441 -12.49905 -12.16963 -11.95943 -11.94951 -11.67468 -11.25727 -11.07251 -10.63827 -10.59248 -10.17165 -9.98125 -9.32700 -8.79192 -7.75556 -5.22509 0.48764 0.78492 1.44432 1.53648 1.59680 2.01495 2.22238 2.38885 2.53895 2.61114 2.79944 3.39549 3.70256 3.90994 3.92416 4.06031 4.15988 4.30620 4.43495 4.53640 4.76484 4.81541 4.84246 4.89271 4.91681 5.00479 5.18249 5.31998 5.39782 5.40354 5.57713 5.65238 5.71317 5.73311 5.98561 6.32900 6.34366 6.59134 6.70182 7.15996 7.30171 7.45727 7.90384 8.38035 9.27957 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.005735 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.568189 B = 4881.152244 C = 6299.108525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.120 3.880 3 H 0.039 0.961 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.177 3.823 7 C -0.250 4.250 8 H 0.089 0.911 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.954 3.046 12 H -0.299 1.299 13 H -0.310 1.310 14 H -0.242 1.242 15 N -0.679 5.679 16 C 0.580 3.420 17 O -0.591 6.591 18 C -0.062 4.062 19 C -0.078 4.078 20 C -0.267 4.267 21 C 0.594 3.406 22 N -0.827 5.827 23 O -0.605 6.605 24 C 0.113 3.887 25 N -0.505 5.505 26 H 0.436 0.564 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.074 0.926 32 H -0.010 1.010 33 H 0.017 0.983 34 H 0.028 0.972 35 H 0.240 0.760 36 H 0.404 0.596 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.412 0.588 40 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -12.037 6.668 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.057 0.943 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.032 3.968 7 C -0.380 4.380 8 H 0.106 0.894 9 C -0.246 4.246 10 N -0.582 5.582 11 Si 0.783 3.217 12 H -0.227 1.227 13 H -0.238 1.238 14 H -0.165 1.165 15 N -0.327 5.327 16 C 0.368 3.632 17 O -0.473 6.473 18 C -0.174 4.174 19 C -0.105 4.105 20 C -0.277 4.277 21 C 0.382 3.618 22 N -0.391 5.391 23 O -0.488 6.488 24 C -0.031 4.031 25 N -0.099 5.099 26 H 0.277 0.723 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.008 0.992 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.240 0.760 37 H 0.144 0.856 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.989 -10.534 6.678 14.812 hybrid contribution 1.422 -0.797 0.044 1.631 sum -6.567 -11.331 6.722 14.721 Atomic orbital electron populations 1.22036 0.93570 1.02893 1.02066 1.21802 0.94252 0.96288 0.86439 0.94298 1.21400 0.83199 0.99619 0.94256 1.44157 1.00827 1.22091 1.66301 1.20486 0.92769 0.90083 0.93468 1.19494 0.95887 0.90672 1.31913 0.89389 1.25704 0.99755 0.98344 1.00798 1.70309 1.12286 1.24111 1.51509 0.85487 0.78890 0.80455 0.76877 1.22712 1.23769 1.16521 1.45553 1.64784 1.13998 1.08385 1.17347 0.77084 0.85813 0.82942 1.90742 1.54047 1.16830 1.85675 1.19875 1.15858 0.85883 0.95762 1.20976 0.99214 0.99189 0.91097 1.19564 1.18248 0.95346 0.94518 1.17481 0.75219 0.83658 0.85449 1.43367 1.68477 1.12380 1.14862 1.90784 1.56673 1.29469 1.71842 1.23200 0.97023 1.00388 0.82500 1.41774 1.47587 1.08668 1.11900 0.72295 0.89932 0.90637 0.94440 0.90745 0.90825 0.99184 0.96399 0.95396 0.95054 0.75972 0.85618 0.74994 0.75636 0.74254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 2 C 0.12 4.19 2.88 44.99 0.13 4.32 16 3 H 0.04 1.69 7.58 -2.39 -0.02 1.67 16 4 C 0.14 4.80 5.36 86.38 0.46 5.26 16 5 N -0.61 -26.97 2.82 -726.94 -2.05 -29.02 16 6 C 0.18 8.53 9.02 127.77 1.15 9.68 16 7 C -0.25 -11.36 8.02 84.03 0.67 -10.68 16 8 H 0.09 3.55 7.86 -2.91 -0.02 3.53 16 9 C -0.05 -2.51 5.06 84.86 0.43 -2.08 16 10 N -0.94 -52.82 10.67 21.65 0.23 -52.59 16 11 Si 0.95 39.04 29.58 68.60 2.03 41.07 16 12 H -0.30 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.31 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 15 N -0.68 -24.41 4.48 -446.37 -2.00 -26.41 16 16 C 0.58 23.87 7.76 86.48 0.67 24.54 16 17 O -0.59 -29.06 16.52 -4.27 -0.07 -29.13 16 18 C -0.06 -2.18 6.99 40.01 0.28 -1.90 16 19 C -0.08 -2.87 10.37 22.59 0.23 -2.64 16 20 C -0.27 -7.49 6.13 -20.12 -0.12 -7.62 16 21 C 0.59 16.43 8.09 86.65 0.70 17.13 16 22 N -0.83 -12.05 8.86 -175.90 -1.56 -13.61 16 23 O -0.61 -23.22 17.76 -4.07 -0.07 -23.29 16 24 C 0.11 2.12 11.43 84.32 0.96 3.09 16 25 N -0.50 -12.23 5.91 -183.34 -1.08 -13.31 16 26 H 0.44 8.52 8.14 -92.71 -0.75 7.76 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 31 H 0.07 2.23 7.86 -2.39 -0.02 2.21 16 32 H -0.01 -0.57 7.40 -2.38 -0.02 -0.59 16 33 H 0.02 0.91 7.21 -2.38 -0.02 0.89 16 34 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 35 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.40 12.97 6.48 -92.71 -0.60 12.37 16 37 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 38 H 0.42 2.57 7.74 -92.71 -0.72 1.86 16 39 H 0.41 4.95 8.93 -92.71 -0.83 4.12 16 40 H 0.24 1.25 7.44 -2.91 -0.02 1.23 16 Total: -1.00 -81.82 341.79 -0.11 -81.93 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -1.79 Total: 28.56 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 6.26 Total: 35.81 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -6.46 Total: -134.94 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.14 Total: -52.42 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -81.82 -0.11 -81.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699470545.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.343 kcal (2) G-P(sol) polarization free energy of solvation -81.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds