Wall clock time and date at job start Tue Mar 31 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36345 * 126.19372 * 2 1 4 4 C 1.36253 * 106.88490 * 180.02562 * 3 2 1 5 5 C 1.47256 * 126.16076 * 179.97438 * 4 3 2 6 6 O 1.21628 * 120.00271 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99574 * 179.97438 * 5 4 3 8 8 C 1.47427 * 125.64924 * 4.76400 * 7 5 4 9 9 C 1.54905 * 104.83111 * 204.14886 * 8 7 5 10 10 C 1.55156 * 101.58598 * 322.99544 * 9 8 7 11 11 C 1.47017 * 125.64829 * 184.79242 * 7 5 4 12 12 H 1.09006 * 110.00972 * 59.42648 * 11 7 5 13 13 C 1.52997 * 109.88273 * 298.33940 * 11 7 5 14 14 N 1.46499 * 109.47316 * 178.09245 * 13 11 7 15 15 C 1.36940 * 120.00440 * 174.92958 * 14 13 11 16 16 H 1.08004 * 119.99516 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.31613 * 120.00373 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46771 * 269.99519 * 19 17 15 21 21 H 1.48501 * 109.46953 * 29.99352 * 19 17 15 22 22 H 1.48498 * 109.47110 * 149.99222 * 19 17 15 23 23 N 1.36031 * 107.67305 * 0.23311 * 4 3 2 24 24 C 1.30713 * 108.93951 * 359.60005 * 23 4 3 25 25 O 1.35455 * 125.54905 * 180.15047 * 24 23 4 26 26 H 1.09006 * 109.47116 * 90.00918 * 1 2 3 27 27 H 1.09009 * 109.46822 * 209.99941 * 1 2 3 28 28 H 1.08997 * 109.47477 * 330.00176 * 1 2 3 29 29 H 1.07994 * 126.56212 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36059 * 85.31431 * 8 7 5 31 31 H 1.08994 * 110.46111 * 323.04243 * 8 7 5 32 32 H 1.09002 * 111.00161 * 204.91406 * 9 8 7 33 33 H 1.09002 * 111.00133 * 81.07276 * 9 8 7 34 34 H 1.08995 * 110.71509 * 277.14160 * 10 9 8 35 35 H 1.08996 * 110.71879 * 153.86578 * 10 9 8 36 36 H 1.09000 * 109.47292 * 58.09596 * 13 11 7 37 37 H 1.08999 * 109.47339 * 298.09144 * 13 11 7 38 38 H 0.97004 * 120.00111 * 354.93422 * 14 13 11 39 39 H 0.97004 * 120.00697 * 180.02562 * 18 17 15 40 40 H 0.96696 * 114.00273 * 270.29700 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2701 1.1003 0.0000 4 6 3.5560 0.6498 -0.0006 5 6 4.7691 1.4845 -0.0013 6 8 4.6731 2.6970 -0.0019 7 7 5.9859 0.9048 -0.0013 8 6 6.2481 -0.5426 -0.1001 9 6 7.6406 -0.7385 0.5495 10 6 8.3840 0.5418 0.0852 11 6 7.2715 1.6111 0.0978 12 1 7.3141 2.1795 1.0269 13 6 7.4412 2.5528 -1.0961 14 7 8.7033 3.2850 -0.9650 15 6 9.1219 4.1138 -1.9715 16 1 8.5218 4.2273 -2.8622 17 6 10.3180 4.8072 -1.8474 18 7 11.0495 4.6685 -0.7621 19 14 10.8886 5.9383 -3.2202 20 1 11.7209 5.1701 -4.1806 21 1 9.7067 6.4963 -3.9252 22 1 11.6917 7.0475 -2.6459 23 7 3.5172 -0.7099 -0.0062 24 6 2.2692 -1.0988 -0.0004 25 8 1.8451 -2.3852 -0.0005 26 1 -0.3634 -0.0002 -1.0277 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.9500 2.1317 0.0004 30 1 6.2696 -0.8537 -1.1446 31 1 5.4916 -1.1050 0.4470 32 1 8.1283 -1.6346 0.1655 33 1 7.5634 -0.7731 1.6362 34 1 8.7831 0.4124 -0.9208 35 1 9.1775 0.8023 0.7855 36 1 6.6121 3.2598 -1.1220 37 1 7.4524 1.9719 -2.0183 38 1 9.2425 3.1828 -0.1651 39 1 11.8852 5.1533 -0.6752 40 1 1.7217 -2.7586 -0.8839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699758952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:26 Heat of formation + Delta-G solvation = 18.580694 kcal Electronic energy + Delta-G solvation = -23646.009212 eV Core-core repulsion = 20077.381238 eV Total energy + Delta-G solvation = -3568.627974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42388 -39.63985 -37.71570 -37.02172 -34.63998 -34.21946 -31.47912 -31.10439 -29.35030 -28.61640 -27.45123 -24.95805 -23.98807 -22.29491 -21.75610 -21.70198 -20.40757 -19.18081 -18.45204 -17.45163 -16.87195 -16.44977 -16.14807 -15.83925 -14.88654 -14.72045 -14.52715 -14.34781 -14.13259 -13.50672 -13.26868 -13.18840 -13.09622 -12.91586 -12.63620 -12.34486 -12.26768 -12.00152 -11.31012 -11.06522 -10.83121 -10.74540 -10.41361 -10.28477 -10.18686 -10.06027 -9.94196 -9.75004 -9.55192 -8.78973 -8.72238 -8.17894 -6.77543 -5.64749 -2.92114 1.34120 1.88875 2.13605 3.12009 3.51867 3.53459 3.56728 3.59172 3.62615 4.24822 4.36918 4.59931 4.70927 4.78025 4.89396 4.93866 5.11533 5.28645 5.30670 5.56339 5.64528 5.69767 5.74211 5.88868 6.00248 6.14184 6.17978 6.20309 6.27432 6.34321 6.38895 6.60788 6.74846 6.97603 7.16591 7.20295 7.41947 7.82071 7.88851 8.47810 8.55246 9.65259 10.23460 10.59382 11.58536 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.003366 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.194694 B = 8316.602168 C = 9033.176029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.465 5.465 3 C 0.041 3.959 4 C -0.033 4.033 5 C 0.611 3.389 6 O -0.532 6.532 7 N -0.596 5.596 8 C 0.102 3.898 9 C -0.137 4.137 10 C -0.120 4.120 11 C 0.131 3.869 12 H 0.075 0.925 13 C 0.145 3.855 14 N -0.729 5.729 15 C -0.231 4.231 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.907 3.093 20 H -0.291 1.291 21 H -0.282 1.282 22 H -0.292 1.292 23 N -0.450 5.450 24 C 0.372 3.628 25 O -0.441 6.441 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.196 0.804 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.020 0.980 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.352 -16.529 2.563 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.096 4.096 4 C -0.162 4.162 5 C 0.398 3.602 6 O -0.409 6.409 7 N -0.328 5.328 8 C -0.021 4.021 9 C -0.175 4.175 10 C -0.158 4.158 11 C 0.028 3.972 12 H 0.093 0.907 13 C 0.017 3.983 14 N -0.373 5.373 15 C -0.362 4.362 16 H 0.087 0.913 17 C -0.212 4.212 18 N -0.585 5.585 19 Si 0.738 3.262 20 H -0.219 1.219 21 H -0.208 1.208 22 H -0.218 1.218 23 N -0.180 5.180 24 C 0.072 3.928 25 O -0.241 6.241 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.213 0.787 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -21.939 -16.339 3.009 27.520 hybrid contribution -0.343 0.841 -1.036 1.377 sum -22.282 -15.498 1.973 27.214 Atomic orbital electron populations 1.22136 0.75868 1.05382 1.04002 1.45825 1.08319 1.06596 1.55264 1.22665 0.89647 0.92465 1.04832 1.20465 0.93522 0.89290 1.12953 1.16419 0.80755 0.85996 0.77041 1.90855 1.85949 1.12887 1.51173 1.48230 1.04898 1.08418 1.71278 1.22525 0.97486 0.81100 1.00988 1.22843 0.95415 0.98605 1.00686 1.22651 0.96792 0.93104 1.03214 1.21836 0.81266 0.93815 1.00275 0.90661 1.20988 0.90563 0.93074 0.93678 1.42219 1.21091 1.52376 1.21652 1.19230 1.02558 1.17475 0.96945 0.91293 1.24705 0.97707 1.01021 0.97752 1.69657 1.15098 1.46550 1.27197 0.86182 0.78312 0.80374 0.81327 1.21854 1.20818 1.21842 1.70976 1.16109 1.11177 1.19780 1.20417 0.84286 0.81407 1.06723 1.84887 1.86795 1.18236 1.34177 0.90105 0.88970 0.88970 0.78671 0.91968 0.88099 0.90261 0.91092 0.89963 0.89950 0.94655 0.96211 0.78344 0.93646 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.11 59.84 0.66 0.91 16 2 N -0.47 -3.94 3.16 -125.77 -0.40 -4.34 16 3 C 0.04 0.45 11.29 -16.26 -0.18 0.26 16 4 C -0.03 -0.48 6.81 -83.05 -0.57 -1.05 16 5 C 0.61 10.91 7.66 -12.59 -0.10 10.82 16 6 O -0.53 -11.16 15.71 5.25 0.08 -11.08 16 7 N -0.60 -10.28 3.06 -164.34 -0.50 -10.78 16 8 C 0.10 1.44 6.29 -2.53 -0.02 1.42 16 9 C -0.14 -1.78 7.08 -24.59 -0.17 -1.96 16 10 C -0.12 -1.96 6.08 -24.90 -0.15 -2.11 16 11 C 0.13 2.51 2.98 -66.96 -0.20 2.31 16 12 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 13 C 0.15 3.38 5.62 -4.04 -0.02 3.35 16 14 N -0.73 -19.80 5.37 -59.91 -0.32 -20.12 16 15 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 16 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 17 C -0.02 -0.49 5.50 -17.44 -0.10 -0.59 16 18 N -0.94 -29.23 13.06 55.49 0.72 -28.50 16 19 Si 0.91 23.35 29.55 -169.99 -5.02 18.32 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 N -0.45 -5.91 8.31 -11.21 -0.09 -6.01 16 24 C 0.37 3.79 9.03 -89.16 -0.81 2.98 16 25 O -0.44 -3.20 13.55 -18.06 -0.24 -3.44 16 26 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.20 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.39 5.86 -51.93 -0.30 1.08 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.45 7.82 -51.93 -0.41 1.04 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.04 0.91 6.64 -51.93 -0.34 0.56 16 37 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.38 10.69 7.51 -40.82 -0.31 10.39 16 39 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.40 0.87 9.06 45.56 0.41 1.29 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -37.76 336.84 -7.22 -44.98 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.72 Total: 6.54 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.80 Total: 9.35 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -0.59 Total: -69.75 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.16 Total: -14.52 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.76 -7.22 -44.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699758952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.556 kcal (2) G-P(sol) polarization free energy of solvation -37.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds