Wall clock time and date at job start Tue Mar 31 2020 03:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46739 * 2 1 4 4 C 1.35365 * 126.38366 * 275.29205 * 3 2 1 5 5 C 1.41503 * 105.49818 * 180.09054 * 4 3 2 6 6 C 1.47715 * 126.51563 * 179.90346 * 5 4 3 7 7 O 1.21573 * 119.99677 * 359.71292 * 6 5 4 8 8 N 1.34769 * 120.00214 * 179.71007 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 O 1.42899 * 112.94549 * 53.40745 * 10 9 8 12 12 C 1.53939 * 113.74068 * 281.67233 * 10 9 8 13 13 N 1.47583 * 86.11837 * 222.04976 * 12 10 9 14 14 C 1.36940 * 134.49291 * 204.64079 * 13 12 10 15 15 H 1.07993 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.38812 * 119.99720 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00315 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99361 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46984 * 90.00371 * 18 16 14 20 20 H 1.48504 * 109.46986 * 209.99877 * 18 16 14 21 21 H 1.48494 * 109.47424 * 330.00289 * 18 16 14 22 22 C 1.47577 * 91.01317 * 24.64108 * 13 12 10 23 23 N 1.31804 * 106.96681 * 359.63988 * 5 4 3 24 24 N 1.28472 * 110.07274 * 0.22831 * 23 5 4 25 25 H 0.96996 * 124.88302 * 179.97438 * 24 23 5 26 26 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47298 * 299.99712 * 1 2 3 28 28 H 1.08995 * 109.47521 * 60.00425 * 1 2 3 29 29 H 1.08998 * 109.47304 * 239.99779 * 2 1 3 30 30 H 1.09004 * 109.47286 * 119.99642 * 2 1 3 31 31 H 1.07994 * 127.24968 * 359.97438 * 4 3 2 32 32 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 34 34 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 35 35 H 0.96699 * 113.99849 * 309.67013 * 11 10 9 36 36 H 1.08998 * 113.77404 * 336.35440 * 12 10 9 37 37 H 1.09003 * 113.77080 * 107.74888 * 12 10 9 38 38 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.77072 * 221.05467 * 22 13 12 40 40 H 1.08999 * 113.76757 * 89.66019 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2051 2.2114 -1.0851 5 6 2.6915 3.4417 -0.5830 6 6 3.0397 4.6385 -1.3757 7 8 2.9213 4.6218 -2.5855 8 7 3.4886 5.7489 -0.7578 9 6 3.8334 6.9361 -1.5439 10 6 4.3128 8.0466 -0.6070 11 8 5.3710 7.6281 0.2574 12 6 3.1710 8.7816 0.1182 13 7 3.9228 10.0197 -0.1652 14 6 3.9809 11.2604 0.4115 15 1 4.6324 12.0170 0.0000 16 6 3.2025 11.5453 1.5250 17 7 2.4090 10.6229 2.0268 18 14 3.2825 13.2376 2.3119 19 1 2.2687 14.1233 1.6851 20 1 3.0060 13.1207 3.7663 21 1 4.6360 13.8140 2.1101 22 6 4.5866 9.3835 -1.3195 23 7 2.7695 3.3186 0.7269 24 7 2.3881 2.1446 1.0830 25 1 2.3602 1.8242 1.9981 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0139 1.9563 -2.1169 32 1 3.5834 5.7621 0.2076 33 1 2.9550 7.2767 -2.0920 34 1 4.6273 6.6875 -2.2483 35 1 5.1906 6.8036 0.7293 36 1 2.2126 8.7218 -0.3975 37 1 3.0998 8.5441 1.1796 38 1 1.8653 10.8221 2.8051 39 1 5.6456 9.6265 -1.4061 40 1 4.0440 9.5005 -2.2576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699909143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:45 Heat of formation + Delta-G solvation = 43.737984 kcal Electronic energy + Delta-G solvation = -23162.406088 eV Core-core repulsion = 19594.869016 eV Total energy + Delta-G solvation = -3567.537072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88436 -39.60397 -38.40038 -34.86896 -34.66468 -33.89542 -32.12462 -31.87287 -29.70214 -28.49676 -26.20174 -24.95863 -24.16549 -23.67466 -21.70752 -21.29108 -20.10983 -19.24248 -17.92415 -17.48292 -16.64497 -16.05430 -15.90728 -15.49985 -14.92798 -14.81849 -14.67760 -14.19372 -13.92313 -13.87236 -13.61925 -13.31212 -13.07030 -12.80111 -12.63555 -12.20013 -12.02939 -11.71707 -11.61958 -11.03870 -10.99374 -10.89026 -10.70207 -10.41629 -10.16583 -9.75021 -9.58755 -9.47677 -9.19666 -9.15870 -8.85225 -8.78099 -6.85863 -5.73399 -3.05097 1.46674 1.90268 2.60851 3.24010 3.42200 3.44742 3.46674 3.48912 4.21611 4.31184 4.46929 4.52272 4.59085 4.81034 4.98905 5.08058 5.15934 5.27012 5.32381 5.34933 5.43013 5.45748 5.62581 5.71657 5.76877 5.81145 6.07786 6.18620 6.34622 6.46516 6.58193 6.61666 6.74407 7.06836 7.22346 7.46563 7.54829 7.74576 7.99827 8.18040 8.28836 9.07238 9.73664 10.60302 11.43854 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.003037 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.430388 B = 9216.801126 C = 9858.071207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.053 4.053 3 C 0.013 3.987 4 C -0.175 4.175 5 C -0.008 4.008 6 C 0.603 3.397 7 O -0.535 6.535 8 N -0.710 5.710 9 C 0.102 3.898 10 C 0.064 3.936 11 O -0.527 6.527 12 C 0.144 3.856 13 N -0.603 5.603 14 C -0.218 4.218 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.136 3.864 23 N -0.254 5.254 24 N -0.379 5.379 25 H 0.444 0.556 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.405 0.595 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.363 0.637 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.055 0.945 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -23.430 -2.608 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.203 4.203 5 C -0.169 4.169 6 C 0.387 3.613 7 O -0.410 6.410 8 N -0.362 5.362 9 C -0.022 4.022 10 C 0.021 3.979 11 O -0.330 6.330 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.345 4.345 15 H 0.099 0.901 16 C -0.206 4.206 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.010 3.990 23 N -0.090 5.090 24 N -0.093 5.093 25 H 0.289 0.711 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.179 0.821 32 H 0.241 0.759 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.209 0.791 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.377 -21.965 -2.561 22.156 hybrid contribution -0.619 -0.145 0.959 1.151 sum -1.997 -22.109 -1.602 22.257 Atomic orbital electron populations 1.21794 0.93957 1.02269 1.02823 1.20116 0.96490 0.88651 1.03977 1.21450 1.05558 0.96894 0.87359 1.21495 1.06738 0.92256 0.99825 1.21964 1.08119 0.96924 0.89877 1.16854 0.77021 0.81117 0.86308 1.90789 1.54040 1.83018 1.13168 1.45789 1.66087 1.12871 1.11442 1.22113 1.01051 0.84295 0.94766 1.23742 0.90734 0.91847 0.91570 1.86599 1.41281 1.44385 1.60772 1.22899 0.91355 0.83906 1.00014 1.45663 1.47533 1.10627 1.29025 1.18997 1.20459 0.87265 1.07794 0.90121 1.24773 0.99047 0.98205 0.98526 1.69808 1.29591 1.32510 1.25071 0.86091 0.77630 0.83383 0.78493 1.21660 1.21674 1.20603 1.22554 0.97895 0.86900 0.91684 1.73591 1.17947 1.02455 1.15037 1.43311 1.47589 1.08559 1.09883 0.71149 0.91738 0.92615 0.91775 0.89012 0.90641 0.82066 0.75949 0.90043 0.90875 0.79084 0.94801 0.90373 0.93737 0.92640 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.25 6.49 -27.88 -0.18 -0.43 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -1.96 10.73 -39.36 -0.42 -2.38 16 5 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 6 C 0.60 9.46 7.82 -12.39 -0.10 9.36 16 7 O -0.54 -9.77 16.93 5.30 0.09 -9.68 16 8 N -0.71 -10.58 5.33 -61.29 -0.33 -10.91 16 9 C 0.10 1.65 5.28 -4.04 -0.02 1.63 16 10 C 0.06 1.22 1.52 -89.69 -0.14 1.09 16 11 O -0.53 -10.09 13.51 -35.23 -0.48 -10.56 16 12 C 0.14 3.41 6.92 -2.98 -0.02 3.39 16 13 N -0.60 -15.92 3.70 -177.81 -0.66 -16.58 16 14 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 15 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.92 -27.75 11.38 55.49 0.63 -27.12 16 18 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.14 2.89 8.34 -2.98 -0.02 2.86 16 23 N -0.25 -3.06 11.92 33.42 0.40 -2.66 16 24 N -0.38 -3.22 6.83 33.50 0.23 -3.00 16 25 H 0.44 2.18 8.96 -190.44 -1.71 0.47 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.41 5.60 7.03 -40.82 -0.29 5.32 16 33 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.36 5.45 7.61 45.56 0.35 5.80 16 36 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.08 2.04 7.15 -51.93 -0.37 1.67 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -36.25 343.40 -8.08 -44.33 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.20 Total: 6.15 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -1.92 Total: 7.23 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.27 Total: -60.25 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.39 Total: -20.24 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.25 -8.08 -44.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699909143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.071 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds