Wall clock time and date at job start Tue Mar 31 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46739 * 2 1 4 4 C 1.35365 * 126.38366 * 275.29205 * 3 2 1 5 5 C 1.41503 * 105.49818 * 180.09054 * 4 3 2 6 6 C 1.47715 * 126.51563 * 179.90346 * 5 4 3 7 7 O 1.21573 * 119.99677 * 359.71292 * 6 5 4 8 8 N 1.34769 * 120.00214 * 179.71007 * 6 5 4 9 9 C 1.46500 * 120.00237 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46998 * 180.02562 * 9 8 6 11 11 O 1.42899 * 112.94549 * 53.40745 * 10 9 8 12 12 C 1.53939 * 113.74068 * 281.67233 * 10 9 8 13 13 N 1.47583 * 86.11837 * 222.04976 * 12 10 9 14 14 C 1.36940 * 134.49291 * 204.64079 * 13 12 10 15 15 H 1.07993 * 119.99656 * 180.02562 * 14 13 12 16 16 C 1.38812 * 119.99720 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00315 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99361 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46984 * 90.00371 * 18 16 14 20 20 H 1.48504 * 109.46986 * 209.99877 * 18 16 14 21 21 H 1.48494 * 109.47424 * 330.00289 * 18 16 14 22 22 C 1.47577 * 91.01317 * 24.64108 * 13 12 10 23 23 N 1.31804 * 106.96681 * 359.63988 * 5 4 3 24 24 N 1.28472 * 110.07274 * 0.22831 * 23 5 4 25 25 H 0.96996 * 124.88302 * 179.97438 * 24 23 5 26 26 H 1.09004 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47298 * 299.99712 * 1 2 3 28 28 H 1.08995 * 109.47521 * 60.00425 * 1 2 3 29 29 H 1.08998 * 109.47304 * 239.99779 * 2 1 3 30 30 H 1.09004 * 109.47286 * 119.99642 * 2 1 3 31 31 H 1.07994 * 127.24968 * 359.97438 * 4 3 2 32 32 H 0.97010 * 119.99854 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.47452 * 60.00368 * 9 8 6 34 34 H 1.09000 * 109.47175 * 300.00158 * 9 8 6 35 35 H 0.96699 * 113.99849 * 309.67013 * 11 10 9 36 36 H 1.08998 * 113.77404 * 336.35440 * 12 10 9 37 37 H 1.09003 * 113.77080 * 107.74888 * 12 10 9 38 38 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.77072 * 221.05467 * 22 13 12 40 40 H 1.08999 * 113.76757 * 89.66019 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2051 2.2114 -1.0851 5 6 2.6915 3.4417 -0.5830 6 6 3.0397 4.6385 -1.3757 7 8 2.9213 4.6218 -2.5855 8 7 3.4886 5.7489 -0.7578 9 6 3.8334 6.9361 -1.5439 10 6 4.3128 8.0466 -0.6070 11 8 5.3710 7.6281 0.2574 12 6 3.1710 8.7816 0.1182 13 7 3.9228 10.0197 -0.1652 14 6 3.9809 11.2604 0.4115 15 1 4.6324 12.0170 0.0000 16 6 3.2025 11.5453 1.5250 17 7 2.4090 10.6229 2.0268 18 14 3.2825 13.2376 2.3119 19 1 2.2687 14.1233 1.6851 20 1 3.0060 13.1207 3.7663 21 1 4.6360 13.8140 2.1101 22 6 4.5866 9.3835 -1.3195 23 7 2.7695 3.3186 0.7269 24 7 2.3881 2.1446 1.0830 25 1 2.3602 1.8242 1.9981 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0139 1.9563 -2.1169 32 1 3.5834 5.7621 0.2076 33 1 2.9550 7.2767 -2.0920 34 1 4.6273 6.6875 -2.2483 35 1 5.1906 6.8036 0.7293 36 1 2.2126 8.7218 -0.3975 37 1 3.0998 8.5441 1.1796 38 1 1.8653 10.8221 2.8051 39 1 5.6456 9.6265 -1.4061 40 1 4.0440 9.5005 -2.2576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699909143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:43 Heat of formation + Delta-G solvation = 13.989072 kcal Electronic energy + Delta-G solvation = -23163.696098 eV Core-core repulsion = 19594.869016 eV Total energy + Delta-G solvation = -3568.827082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.70205 -41.05157 -39.90410 -36.51061 -35.42055 -35.07147 -34.01907 -32.93637 -30.57184 -30.01595 -27.91769 -26.75667 -25.05958 -24.59009 -23.41388 -22.04134 -21.31796 -20.88300 -18.95894 -18.65158 -18.40157 -17.27713 -17.17807 -16.91070 -16.47643 -16.03028 -15.75405 -15.51143 -15.26086 -14.99840 -14.75687 -14.57779 -14.41204 -14.14800 -13.88840 -13.44840 -13.28377 -12.97184 -12.82683 -12.56436 -12.49269 -12.23115 -12.07883 -11.79935 -11.72104 -11.52823 -11.18911 -10.97524 -10.73453 -10.51367 -10.12905 -9.95626 -8.94235 -7.91122 -5.24310 0.48446 1.11534 1.44556 1.47115 1.55686 1.82429 2.17304 2.32679 2.46232 3.03991 3.27250 3.32429 3.37331 3.60665 3.69986 3.87935 4.01345 4.32462 4.37721 4.44073 4.53987 4.67652 4.70672 4.76327 4.78244 4.83202 4.95140 5.09722 5.16269 5.20050 5.24755 5.31917 5.32766 5.42393 5.48447 5.91321 6.09042 6.35039 6.76818 6.85363 6.90522 7.08309 7.58804 8.52340 9.25546 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.003037 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.430388 B = 9216.801126 C = 9858.071207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.036 3.964 4 C -0.198 4.198 5 C -0.036 4.036 6 C 0.603 3.397 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.117 3.883 10 C 0.096 3.904 11 O -0.540 6.540 12 C 0.143 3.857 13 N -0.636 5.636 14 C -0.234 4.234 15 H 0.084 0.916 16 C -0.069 4.069 17 N -0.953 5.953 18 Si 0.982 3.018 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.132 3.868 23 N -0.270 5.270 24 N -0.363 5.363 25 H 0.461 0.539 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.164 0.836 32 H 0.410 0.590 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.381 0.619 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.248 0.752 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 -25.096 -2.409 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.091 4.091 4 C -0.226 4.226 5 C -0.196 4.196 6 C 0.389 3.611 7 O -0.444 6.444 8 N -0.358 5.358 9 C -0.008 4.008 10 C 0.054 3.946 11 O -0.346 6.346 12 C 0.017 3.983 13 N -0.362 5.362 14 C -0.362 4.362 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.810 3.190 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.194 1.194 22 C 0.007 3.993 23 N -0.107 5.107 24 N -0.080 5.080 25 H 0.309 0.691 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.181 0.819 32 H 0.247 0.753 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.038 -23.656 -2.355 23.796 hybrid contribution -0.721 0.265 0.917 1.196 sum -1.759 -23.391 -1.438 23.501 Atomic orbital electron populations 1.21792 0.93827 1.03214 1.01979 1.20294 0.96377 0.86305 1.05923 1.21911 1.03142 0.97888 0.86140 1.21687 1.07845 0.92091 1.00964 1.21754 1.10314 0.96935 0.90557 1.17145 0.76223 0.81615 0.86139 1.90759 1.55452 1.83676 1.14495 1.45702 1.66015 1.12453 1.11581 1.21850 1.01238 0.83736 0.93995 1.23177 0.88542 0.92194 0.90716 1.86551 1.41083 1.45811 1.61151 1.22827 0.92520 0.84360 0.98591 1.46049 1.48587 1.10587 1.30989 1.19400 1.20190 0.88545 1.08050 0.89853 1.25645 0.99176 1.02008 0.99334 1.69999 1.30476 1.34304 1.25381 0.85034 0.78015 0.78976 0.77023 1.21210 1.21948 1.19392 1.22798 0.98023 0.87151 0.91376 1.73515 1.18698 1.04078 1.14411 1.43422 1.45969 1.07588 1.11003 0.69125 0.89928 0.93009 0.93120 0.87791 0.87989 0.81854 0.75343 0.90329 0.89518 0.76981 0.95604 0.93480 0.94309 0.92192 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.34 16 2 C -0.05 -0.32 6.49 29.85 0.19 -0.13 16 3 C 0.04 0.52 6.48 41.40 0.27 0.79 16 4 C -0.20 -4.26 10.73 22.41 0.24 -4.02 16 5 C -0.04 -0.96 7.13 42.46 0.30 -0.66 16 6 C 0.60 18.92 7.82 86.75 0.68 19.60 16 7 O -0.57 -20.78 16.93 -3.95 -0.07 -20.84 16 8 N -0.71 -20.81 5.33 -466.10 -2.49 -23.30 16 9 C 0.12 3.68 5.28 86.38 0.46 4.13 16 10 C 0.10 3.65 1.52 -10.13 -0.02 3.63 16 11 O -0.54 -20.24 13.51 -148.98 -2.01 -22.25 16 12 C 0.14 6.89 6.92 86.48 0.60 7.49 16 13 N -0.64 -33.88 3.70 -720.29 -2.66 -36.54 16 14 C -0.23 -13.61 10.70 84.03 0.90 -12.71 16 15 H 0.08 4.65 7.83 -2.91 -0.02 4.62 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 17 N -0.95 -58.62 11.38 21.65 0.25 -58.37 16 18 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C 0.13 5.48 8.34 86.48 0.72 6.20 16 23 N -0.27 -6.24 11.92 -48.17 -0.57 -6.81 16 24 N -0.36 -5.47 6.83 -47.93 -0.33 -5.80 16 25 H 0.46 3.36 8.96 -219.99 -1.97 1.39 16 26 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.41 11.27 7.03 -92.70 -0.65 10.61 16 33 H 0.08 2.57 8.04 -2.39 -0.02 2.55 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.38 11.13 7.61 -74.06 -0.56 10.56 16 36 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.05 2.55 7.15 -2.39 -0.02 2.53 16 38 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -79.18 343.40 -2.43 -81.61 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -2.09 Total: 22.92 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 5.52 Total: 20.40 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.80 Total: -130.82 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -2.08 Total: -43.10 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.18 -2.43 -81.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699909143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.594 kcal (2) G-P(sol) polarization free energy of solvation -79.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds