Wall clock time and date at job start Tue Mar 31 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35774 * 116.99961 * 2 1 4 4 C 1.35593 * 126.08488 * 183.31231 * 3 2 1 5 5 C 1.41055 * 107.79794 * 179.88079 * 4 3 2 6 6 C 1.47724 * 125.97854 * 180.15179 * 5 4 3 7 7 O 1.21570 * 120.00359 * 0.24714 * 6 5 4 8 8 N 1.34776 * 119.99765 * 180.24866 * 6 5 4 9 9 C 1.46502 * 120.00047 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47324 * 179.97438 * 9 8 6 11 11 C 1.30991 * 119.99888 * 124.99865 * 10 9 8 12 12 C 1.50702 * 120.00177 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47446 * 125.00098 * 12 11 10 14 14 C 1.36936 * 120.00250 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00270 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00253 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47394 * 89.99568 * 18 16 14 20 20 H 1.48504 * 109.46634 * 209.99420 * 18 16 14 21 21 H 1.48496 * 109.46908 * 329.99301 * 18 16 14 22 22 N 1.31862 * 108.03700 * 0.37844 * 5 4 3 23 23 N 1.35843 * 126.08169 * 3.61378 * 3 2 1 24 24 C 1.46500 * 125.95282 * 359.97438 * 23 3 2 25 25 H 1.08997 * 109.47041 * 66.97606 * 1 2 3 26 26 H 1.08996 * 109.46873 * 186.97401 * 1 2 3 27 27 H 1.09004 * 109.46932 * 306.97785 * 1 2 3 28 28 H 1.08003 * 126.09917 * 0.02562 * 4 3 2 29 29 H 0.97002 * 120.00235 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.47280 * 300.00104 * 9 8 6 31 31 H 1.09004 * 109.46666 * 60.00233 * 9 8 6 32 32 H 1.08006 * 119.99807 * 305.00423 * 10 9 8 33 33 H 1.08006 * 120.00305 * 0.02562 * 11 10 9 34 34 H 1.09004 * 109.47324 * 245.00513 * 12 11 10 35 35 H 1.09000 * 109.47192 * 4.99808 * 12 11 10 36 36 H 0.97006 * 119.99965 * 0.02562 * 13 12 11 37 37 H 0.96999 * 120.00372 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.46761 * 82.75721 * 24 23 3 39 39 H 1.08993 * 109.47037 * 202.75572 * 24 23 3 40 40 H 1.08999 * 109.47067 * 322.76453 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3827 1.4247 -0.0633 5 6 3.5969 2.8187 -0.0405 6 6 4.9085 3.4962 -0.0945 7 8 5.9290 2.8400 -0.1702 8 7 4.9737 4.8419 -0.0598 9 6 6.2744 5.5139 -0.1128 10 6 6.0715 7.0062 -0.0597 11 6 6.6783 7.7175 0.8579 12 6 6.4749 9.2098 0.9114 13 7 6.0135 9.5922 2.2481 14 6 5.7597 10.9069 2.5348 15 1 5.9001 11.6621 1.7755 16 6 5.3230 11.2693 3.8016 17 7 5.1524 10.3492 4.7272 18 14 4.9761 13.0628 4.1924 19 1 3.5561 13.3705 3.8860 20 1 5.2378 13.3151 5.6323 21 1 5.8589 13.9283 3.3697 22 7 2.4217 3.4110 0.0423 23 7 1.4324 2.4200 0.0692 24 6 -0.0120 2.6488 0.1565 25 1 -0.3633 0.4019 -0.9458 26 1 -0.3633 -1.0200 0.1248 27 1 -0.3633 0.6182 0.8210 28 1 4.1473 0.6643 -0.1231 29 1 4.1594 5.3656 0.0002 30 1 6.8810 5.1989 0.7363 31 1 6.7824 5.2494 -1.0402 32 1 5.4257 7.4893 -0.7781 33 1 7.3243 7.2345 1.5761 34 1 7.4173 9.7129 0.6945 35 1 5.7289 9.5015 0.1722 36 1 5.8878 8.9140 2.9303 37 1 4.8469 10.6024 5.6123 38 1 -0.3338 2.5482 1.1931 39 1 -0.2431 3.6526 -0.1999 40 1 -0.5338 1.9157 -0.4586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754146707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:04 Heat of formation + Delta-G solvation = 28.315796 kcal Electronic energy + Delta-G solvation = -22069.413306 eV Core-core repulsion = 18501.207477 eV Total energy + Delta-G solvation = -3568.205828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.74098 -40.65950 -39.20925 -37.67455 -36.26314 -34.63652 -34.32026 -32.48048 -31.20515 -29.25678 -28.60361 -27.21236 -25.99120 -24.31938 -23.25543 -22.51683 -21.45730 -20.58870 -19.33354 -19.03678 -17.74484 -17.52257 -17.34799 -16.69813 -16.46851 -16.34306 -16.20267 -15.70178 -15.43670 -15.23607 -15.09359 -14.79614 -14.65335 -14.33747 -13.97147 -13.91107 -13.49601 -13.32147 -12.87510 -12.74550 -12.42574 -12.31505 -12.18661 -11.98905 -11.84560 -11.79081 -11.47287 -11.02777 -10.46691 -10.25456 -9.97567 -9.56382 -9.01166 -7.95711 -5.25788 0.16376 0.99286 1.02658 1.10524 1.48117 1.50183 1.58897 1.85104 2.22370 2.36313 2.57339 3.08918 3.38002 3.71599 3.80972 3.99721 4.09657 4.14054 4.24273 4.24820 4.28407 4.35916 4.48108 4.51886 4.63801 4.68756 4.71737 4.73111 4.93529 4.97487 5.01671 5.17788 5.26326 5.47764 5.66416 5.84238 6.07040 6.25377 6.26296 6.46767 6.99880 7.32119 8.06556 8.30425 9.27909 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.002478 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.074263 B =11296.560252 C =12467.392026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.298 6.298 3 C 0.280 3.720 4 C -0.261 4.261 5 C 0.041 3.959 6 C 0.599 3.401 7 O -0.559 6.559 8 N -0.701 5.701 9 C 0.156 3.844 10 C -0.163 4.163 11 C -0.129 4.129 12 C 0.173 3.827 13 N -0.745 5.745 14 C -0.248 4.248 15 H 0.079 0.921 16 C -0.078 4.078 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.268 1.268 22 N -0.262 5.262 23 N -0.384 5.384 24 C 0.061 3.939 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.080 0.920 28 H 0.163 0.837 29 H 0.415 0.585 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.374 0.626 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 -21.392 -13.429 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.204 6.204 3 C 0.112 3.888 4 C -0.292 4.292 5 C -0.126 4.126 6 C 0.384 3.616 7 O -0.436 6.436 8 N -0.352 5.352 9 C 0.034 3.966 10 C -0.182 4.182 11 C -0.149 4.149 12 C 0.047 3.953 13 N -0.388 5.388 14 C -0.380 4.380 15 H 0.097 0.903 16 C -0.270 4.270 17 N -0.621 5.621 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.193 1.193 22 N -0.094 5.094 23 N -0.182 5.182 24 C -0.078 4.078 25 H 0.099 0.901 26 H 0.150 0.850 27 H 0.098 0.902 28 H 0.180 0.820 29 H 0.252 0.748 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.128 0.872 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.206 0.794 37 H 0.061 0.939 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.169 -20.858 -13.474 28.107 hybrid contribution -0.318 0.266 0.817 0.916 sum -13.487 -20.592 -12.657 27.679 Atomic orbital electron populations 1.24108 0.75259 1.07537 1.03111 1.86334 1.24434 1.20199 1.89480 1.19487 0.90789 0.79881 0.98652 1.20435 0.93306 0.95278 1.20147 1.21664 0.92585 0.93576 1.04726 1.17043 0.86143 0.82150 0.76311 1.90780 1.35428 1.65891 1.51470 1.45861 1.11066 1.05464 1.72804 1.20387 0.84277 0.88904 1.03069 1.22750 1.01533 0.93787 1.00157 1.23024 0.98982 0.95477 0.97393 1.19919 0.96911 0.91292 0.87157 1.42545 1.80615 1.05577 1.10029 1.19686 1.36173 0.85894 0.96215 0.90312 1.25645 1.03037 1.02015 0.96299 1.69833 1.54446 1.33768 1.04078 0.85081 0.77993 0.79623 0.76703 1.21199 1.22186 1.19263 1.77664 0.95388 1.12180 1.24176 1.49414 1.08310 1.02267 1.58192 1.23062 0.71955 1.07211 1.05527 0.90120 0.84976 0.90181 0.81964 0.74839 0.91353 0.89262 0.85271 0.87175 0.94988 0.94924 0.79442 0.93948 0.88452 0.87679 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.40 113.37 1.07 1.04 16 2 O -0.30 -4.57 10.57 -91.02 -0.96 -5.53 16 3 C 0.28 5.68 7.78 83.46 0.65 6.33 16 4 C -0.26 -6.62 10.59 22.35 0.24 -6.38 16 5 C 0.04 1.11 7.09 42.34 0.30 1.41 16 6 C 0.60 17.88 7.83 86.75 0.68 18.56 16 7 O -0.56 -19.61 16.90 -3.94 -0.07 -19.68 16 8 N -0.70 -18.47 5.55 -469.81 -2.61 -21.08 16 9 C 0.16 3.98 6.11 85.63 0.52 4.51 16 10 C -0.16 -4.35 9.24 25.66 0.24 -4.11 16 11 C -0.13 -4.21 9.24 25.66 0.24 -3.97 16 12 C 0.17 6.93 6.70 85.63 0.57 7.50 16 13 N -0.74 -38.73 5.59 -347.18 -1.94 -40.67 16 14 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 15 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 17 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 18 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 N -0.26 -6.53 12.26 -48.43 -0.59 -7.12 16 23 N -0.38 -7.12 4.04 -480.56 -1.94 -9.06 16 24 C 0.06 0.46 9.59 127.77 1.23 1.68 16 25 H 0.08 0.08 6.62 -2.39 -0.02 0.07 16 26 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.08 0.14 5.80 -2.39 -0.01 0.13 16 28 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.42 10.17 8.16 -92.71 -0.76 9.41 16 30 H 0.07 1.87 7.79 -2.39 -0.02 1.85 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.13 3.14 7.84 -2.91 -0.02 3.12 16 33 H 0.11 3.58 7.84 -2.91 -0.02 3.55 16 34 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.03 1.27 7.79 -2.39 -0.02 1.25 16 36 H 0.37 20.77 7.66 -92.70 -0.71 20.06 16 37 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.10 0.46 7.64 -2.38 -0.02 0.44 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.13 0.13 4.64 -2.39 -0.01 0.12 16 Total: -1.00 -76.86 346.43 0.85 -76.01 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.38 Total: 29.51 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.03 Total: 9.31 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -6.80 Total: -137.94 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -1.03 Total: -25.21 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -76.86 0.85 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754146707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.324 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds