Wall clock time and date at job start Tue Mar 31 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46847 * 2 1 4 4 C 1.53002 * 109.47205 * 240.00324 * 2 1 3 5 5 N 1.46499 * 109.47115 * 184.99493 * 4 2 1 6 6 C 1.36940 * 119.99560 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00513 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99273 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99669 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00553 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47202 * 89.99814 * 10 8 6 12 12 H 1.48499 * 109.47417 * 210.00018 * 10 8 6 13 13 H 1.48505 * 109.46759 * 329.99943 * 10 8 6 14 14 N 1.46497 * 109.47450 * 120.00065 * 2 1 3 15 15 C 1.34773 * 120.00138 * 275.00271 * 14 2 1 16 16 O 1.21672 * 119.99967 * 0.02562 * 15 14 2 17 17 C 1.46924 * 120.00362 * 179.97438 * 15 14 2 18 18 C 1.41704 * 126.55651 * 359.94571 * 17 15 14 19 19 N 1.30564 * 108.19124 * 180.02562 * 18 17 15 20 20 N 1.39354 * 109.06007 * 359.95447 * 19 18 17 21 21 C 1.35158 * 108.46693 * 0.10601 * 20 19 18 22 22 O 1.35457 * 123.87164 * 179.84090 * 21 20 19 23 23 C 1.43537 * 115.05562 * 344.47829 * 22 21 20 24 24 C 1.53255 * 109.23314 * 46.88173 * 23 22 21 25 25 C 1.46797 * 127.97303 * 180.16999 * 20 19 18 26 26 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47242 * 299.99588 * 1 2 3 28 28 H 1.09000 * 109.47288 * 60.00323 * 1 2 3 29 29 H 1.09006 * 109.46965 * 305.00113 * 4 2 1 30 30 H 1.08998 * 109.46974 * 64.99277 * 4 2 1 31 31 H 0.96995 * 119.99785 * 0.02562 * 5 4 2 32 32 H 0.96992 * 120.00406 * 180.02562 * 9 8 6 33 33 H 0.97005 * 119.99615 * 95.00129 * 14 2 1 34 34 H 1.07994 * 125.90227 * 0.02562 * 18 17 15 35 35 H 1.09002 * 109.52026 * 166.82424 * 23 22 21 36 36 H 1.09001 * 109.52045 * 286.93928 * 23 22 21 37 37 H 1.08996 * 109.50589 * 55.84876 * 24 23 22 38 38 H 1.08994 * 109.51006 * 175.98684 * 24 23 22 39 39 H 1.08998 * 109.76032 * 282.50754 * 25 20 19 40 40 H 1.09002 * 109.75896 * 43.21695 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8262 -1.1907 6 6 4.1838 -1.4386 -2.2069 7 1 3.6467 -1.8438 -3.0518 8 6 5.5672 -1.5386 -2.1511 9 7 6.2244 -2.1267 -3.1281 10 14 6.4960 -0.8384 -0.6895 11 1 6.6267 -1.8812 0.3597 12 1 7.8471 -0.4019 -1.1245 13 1 5.7527 0.3246 -0.1416 14 7 2.0184 -0.6906 1.1961 15 6 2.1471 -0.0183 2.3571 16 8 1.8572 1.1621 2.4119 17 6 2.6364 -0.7110 3.5568 18 6 3.0098 -2.0747 3.6508 19 7 3.3886 -2.3100 4.8779 20 7 3.2818 -1.1355 5.6203 21 6 2.8193 -0.1575 4.8101 22 8 2.5957 1.1156 5.2151 23 6 2.5461 1.3011 6.6376 24 6 3.7338 0.5787 7.2827 25 6 3.6016 -0.9311 7.0383 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7198 -1.2953 30 1 1.7516 -0.1583 -2.1370 31 1 3.9823 -0.4626 -0.4317 32 1 7.1910 -2.1970 -3.0890 33 1 2.2491 -1.6318 1.1525 34 1 2.9853 -2.7949 2.8464 35 1 2.5982 2.3652 6.8681 36 1 1.6147 0.8895 7.0263 37 1 4.6626 0.9380 6.8397 38 1 3.7410 0.7755 8.3547 39 1 2.8012 -1.3346 7.6585 40 1 4.5411 -1.4284 7.2796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754233117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:06 Heat of formation + Delta-G solvation = -7.140317 kcal Electronic energy + Delta-G solvation = -23948.152316 eV Core-core repulsion = 20378.408995 eV Total energy + Delta-G solvation = -3569.743321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.99404 -40.54514 -39.63049 -37.69624 -35.68442 -35.45094 -33.34609 -32.25421 -31.76411 -30.37415 -27.59427 -27.37211 -25.16948 -24.03997 -23.55625 -22.28262 -21.28039 -20.78710 -19.91102 -19.22602 -18.08670 -17.53012 -17.19238 -16.67555 -16.43850 -16.18021 -15.86771 -15.79792 -15.58916 -15.28234 -14.87351 -14.80955 -14.41251 -14.13660 -13.85595 -13.63830 -13.45619 -13.15207 -12.87629 -12.73974 -12.63554 -12.53760 -12.21223 -12.18174 -11.88277 -11.84962 -11.71077 -11.03206 -10.86456 -10.34516 -10.07060 -9.53203 -9.29122 -8.02545 -5.34439 0.42260 1.03403 1.04846 1.35588 1.37756 1.43812 1.95514 2.32496 2.45081 2.46245 3.11609 3.30019 3.46563 3.58642 3.66923 3.85982 3.93905 3.95034 4.05620 4.22241 4.28659 4.33171 4.46319 4.48286 4.54734 4.57604 4.85151 4.86014 4.90716 4.98258 5.04713 5.16876 5.33026 5.35810 5.64179 5.78368 6.12261 6.21999 6.37642 6.68736 7.08084 7.36041 7.84668 8.02494 9.19038 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.004705 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.350501 B = 5949.359521 C = 6917.773642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.140 3.860 3 H 0.064 0.936 4 C 0.149 3.851 5 N -0.758 5.758 6 C -0.227 4.227 7 H 0.067 0.933 8 C -0.054 4.054 9 N -0.980 5.980 10 Si 0.942 3.058 11 H -0.272 1.272 12 H -0.296 1.296 13 H -0.271 1.271 14 N -0.709 5.709 15 C 0.595 3.405 16 O -0.587 6.587 17 C -0.338 4.338 18 C 0.107 3.893 19 N -0.299 5.299 20 N -0.393 5.393 21 C 0.333 3.667 22 O -0.292 6.292 23 C 0.029 3.971 24 C -0.166 4.166 25 C 0.113 3.887 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.363 0.637 32 H 0.258 0.742 33 H 0.409 0.591 34 H 0.219 0.781 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.273 3.535 26.618 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.082 0.918 4 C 0.022 3.978 5 N -0.404 5.404 6 C -0.358 4.358 7 H 0.085 0.915 8 C -0.246 4.246 9 N -0.631 5.631 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.223 1.223 13 H -0.197 1.197 14 N -0.360 5.360 15 C 0.384 3.616 16 O -0.469 6.469 17 C -0.353 4.353 18 C -0.081 4.081 19 N -0.121 5.121 20 N -0.188 5.188 21 C 0.158 3.842 22 O -0.196 6.196 23 C -0.045 4.045 24 C -0.204 4.204 25 C -0.005 4.005 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.196 0.804 32 H 0.067 0.933 33 H 0.245 0.755 34 H 0.235 0.765 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.175 0.825 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.065 3.683 27.308 29.336 hybrid contribution 0.912 0.517 -0.120 1.056 sum -9.153 4.201 27.188 28.993 Atomic orbital electron populations 1.21994 0.92607 1.03252 1.02576 1.21137 0.95613 0.96289 0.83478 0.91825 1.21142 0.82676 0.98772 0.95162 1.42757 1.03332 1.70719 1.23612 1.19080 0.89998 1.27551 0.99187 0.91488 1.25295 0.97217 1.01848 1.00190 1.69846 1.07451 1.50957 1.34818 0.85606 0.78020 0.78882 0.80418 1.19785 1.22315 1.19725 1.45723 1.67138 1.14498 1.08642 1.17200 0.76326 0.85430 0.82620 1.90741 1.53484 1.16939 1.85765 1.19227 1.26742 0.95934 0.93436 1.24408 0.94279 0.94005 0.95438 1.77017 1.26216 1.03933 1.04887 1.49392 1.51861 1.06121 1.11403 1.19797 0.91806 0.81833 0.90745 1.86733 1.85918 1.19152 1.27842 1.23725 0.99872 1.05464 0.75458 1.22702 0.98995 0.92046 1.06696 1.22534 1.05415 0.98474 0.74086 0.90721 0.93106 0.90063 0.93217 0.93687 0.80407 0.93346 0.75459 0.76479 0.83766 0.89252 0.90265 0.82488 0.86606 0.86414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.48 71.98 0.68 -3.06 16 2 C 0.14 4.55 2.73 44.99 0.12 4.68 16 3 H 0.06 2.39 7.58 -2.39 -0.02 2.38 16 4 C 0.15 5.46 5.82 86.38 0.50 5.96 16 5 N -0.76 -35.57 5.24 -343.44 -1.80 -37.36 16 6 C -0.23 -12.88 10.47 84.03 0.88 -12.00 16 7 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 8 C -0.05 -3.18 5.50 84.86 0.47 -2.72 16 9 N -0.98 -62.89 13.97 21.65 0.30 -62.59 16 10 Si 0.94 47.41 27.74 68.60 1.90 49.31 16 11 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 13 H -0.27 -13.28 6.52 99.48 0.65 -12.64 16 14 N -0.71 -22.68 4.51 -446.27 -2.01 -24.69 16 15 C 0.59 21.26 7.76 86.52 0.67 21.93 16 16 O -0.59 -24.88 16.19 -2.02 -0.03 -24.91 16 17 C -0.34 -10.64 6.14 -20.15 -0.12 -10.76 16 18 C 0.11 2.86 11.51 85.74 0.99 3.85 16 19 N -0.30 -7.88 12.54 -55.94 -0.70 -8.59 16 20 N -0.39 -8.97 4.04 -456.70 -1.85 -10.82 16 21 C 0.33 9.44 7.50 84.18 0.63 10.07 16 22 O -0.29 -7.70 10.18 -85.30 -0.87 -8.57 16 23 C 0.03 0.34 7.01 72.07 0.51 0.85 16 24 C -0.17 -1.18 6.17 30.85 0.19 -0.99 16 25 C 0.11 1.25 7.40 86.49 0.64 1.89 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.36 17.18 5.20 -92.71 -0.48 16.69 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.41 11.64 7.56 -92.70 -0.70 10.94 16 34 H 0.22 4.51 7.51 -2.91 -0.02 4.48 16 35 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.16 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -83.02 336.40 0.94 -82.08 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.17 Total: 26.43 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.16 Total: 19.69 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -6.06 Total: -144.04 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.90 Total: -33.47 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.90 Total: 49.31 kcal Total: -83.02 0.94 -82.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754233117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.940 kcal (2) G-P(sol) polarization free energy of solvation -83.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds