Wall clock time and date at job start Tue Mar 31 2020 04:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47229 * 2 1 4 4 C 1.52998 * 109.47309 * 119.99858 * 2 1 3 5 5 N 1.46899 * 109.47386 * 175.00177 * 4 2 1 6 6 C 1.46894 * 111.00290 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47417 * 179.97438 * 6 5 4 8 8 O 1.21297 * 119.99757 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00234 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99946 * 179.97438 * 9 7 6 11 11 H 1.07996 * 120.00319 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99752 * 179.97438 * 10 9 7 13 13 N 1.31420 * 119.99982 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00142 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47155 * 89.99788 * 14 12 10 16 16 H 1.48498 * 109.47008 * 209.99818 * 14 12 10 17 17 H 1.48502 * 109.47202 * 330.00040 * 14 12 10 18 18 N 1.46500 * 109.47098 * 240.00287 * 2 1 3 19 19 C 1.34773 * 120.00431 * 85.00044 * 18 2 1 20 20 O 1.21633 * 119.99868 * 359.97438 * 19 18 2 21 21 C 1.47265 * 120.00141 * 179.72637 * 19 18 2 22 22 C 1.46687 * 126.93890 * 359.95233 * 21 19 18 23 23 C 1.34483 * 106.32741 * 179.88941 * 22 21 19 24 24 N 1.36451 * 108.85786 * 0.38188 * 23 22 21 25 25 H 0.97006 * 124.84904 * 179.72673 * 24 23 22 26 26 C 1.34649 * 110.29842 * 359.74680 * 24 23 22 27 27 H 1.08994 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47061 * 300.00108 * 1 2 3 29 29 H 1.09004 * 109.47132 * 59.99646 * 1 2 3 30 30 H 1.09009 * 109.47126 * 295.00003 * 4 2 1 31 31 H 1.09000 * 109.47194 * 54.99765 * 4 2 1 32 32 H 1.00904 * 110.99924 * 303.95526 * 5 4 2 33 33 H 1.09001 * 109.47451 * 299.99766 * 6 5 4 34 34 H 1.08998 * 109.47287 * 59.99723 * 6 5 4 35 35 H 0.96993 * 120.00042 * 359.97438 * 9 7 6 36 36 H 0.96993 * 119.99865 * 180.02562 * 13 12 10 37 37 H 0.97000 * 119.99456 * 264.99607 * 18 2 1 38 38 H 1.08001 * 126.83569 * 0.03990 * 22 21 19 39 39 H 1.08002 * 125.56964 * 180.12618 * 23 22 21 40 40 H 1.08006 * 125.80193 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5158 2.3761 7 6 5.5315 -1.6053 2.2802 8 8 6.1065 -1.1410 1.3183 9 7 6.2353 -2.2021 3.2626 10 6 7.6009 -2.2840 3.1749 11 1 8.1129 -1.8707 2.3186 12 6 8.3265 -2.8988 4.1881 13 7 9.6356 -2.9778 4.1039 14 14 7.4410 -3.6144 5.6690 15 1 7.0907 -5.0320 5.3990 16 1 8.3270 -3.5413 6.8584 17 1 6.2012 -2.8387 5.9269 18 7 2.0183 -0.6905 -1.1962 19 6 2.1470 -0.0182 -2.3571 20 8 1.8573 1.1618 -2.4119 21 6 2.6436 -0.7110 -3.5581 22 6 3.0408 -2.1192 -3.6625 23 6 3.4226 -2.3107 -4.9377 24 7 3.2990 -1.1336 -5.6167 25 1 3.5158 -1.0089 -6.5539 26 6 2.8335 -0.1698 -4.7997 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.7516 -0.1582 2.1370 31 1 1.6054 -1.7197 1.2952 32 1 3.7996 -1.2883 0.3433 33 1 3.7558 -0.9587 3.2719 34 1 3.6095 -2.5198 2.4295 35 1 5.7755 -2.5736 4.0315 36 1 10.1420 -3.4073 4.8109 37 1 2.2490 -1.6317 -1.1526 38 1 3.0268 -2.8562 -2.8732 39 1 3.7739 -3.2429 -5.3551 40 1 2.6429 0.8563 -5.0776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754268364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:51 Heat of formation + Delta-G solvation = -21.258137 kcal Electronic energy + Delta-G solvation = -22832.353395 eV Core-core repulsion = 19261.997880 eV Total energy + Delta-G solvation = -3570.355516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23063 -39.35291 -38.41098 -36.58518 -34.23697 -33.63460 -31.83867 -31.61545 -30.28300 -29.21925 -27.71289 -25.03736 -23.62731 -22.96306 -21.06314 -20.51882 -19.78974 -19.33347 -18.94612 -18.29362 -16.48508 -16.25827 -15.72874 -15.40174 -15.00754 -14.82836 -14.41504 -14.10350 -13.95897 -13.88031 -13.72689 -13.21189 -13.16864 -13.06776 -12.68496 -12.41890 -12.24373 -12.19892 -11.89297 -11.73226 -11.58183 -11.16320 -10.94865 -10.58282 -9.95909 -9.82436 -9.55396 -9.12151 -8.92149 -8.56274 -8.50409 -8.17696 -8.11209 -6.29348 -3.80664 1.71722 2.28636 2.94496 3.03954 3.07384 3.15944 3.41813 3.63227 3.76564 4.08047 4.12392 4.74591 4.79771 4.87454 4.96075 5.08623 5.16150 5.22590 5.27648 5.30269 5.45039 5.59006 5.61879 5.67799 5.69328 5.81845 5.86062 5.95332 6.03846 6.15994 6.53143 6.58380 6.73182 7.09254 7.22697 7.57697 7.60485 7.64419 8.16661 8.41637 8.61966 8.97117 9.44421 9.85272 10.83893 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.003218 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.551750 B = 8699.942097 C = 9853.490237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.047 3.953 7 C 0.449 3.551 8 O -0.562 6.562 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.269 1.269 18 N -0.719 5.719 19 C 0.597 3.403 20 O -0.555 6.555 21 C -0.233 4.233 22 C -0.167 4.167 23 C -0.018 4.018 24 N -0.555 5.555 25 H 0.417 0.583 26 C 0.074 3.926 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.350 0.650 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.396 0.604 38 H 0.145 0.855 39 H 0.169 0.831 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.351 -0.888 -13.284 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.444 6.444 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 N -0.370 5.370 19 C 0.386 3.614 20 O -0.434 6.434 21 C -0.243 4.243 22 C -0.192 4.192 23 C -0.146 4.146 24 N -0.149 5.149 25 H 0.254 0.746 26 C -0.063 4.063 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.171 0.829 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.186 0.814 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.802 0.814 -13.729 23.295 hybrid contribution -0.462 -2.074 0.827 2.280 sum -19.263 -1.260 -12.902 23.219 Atomic orbital electron populations 1.22149 0.95191 1.01954 1.02660 1.20994 0.93303 0.98539 0.83113 0.88421 1.22308 0.88632 0.98963 0.98010 1.59999 1.07691 1.57445 1.04876 1.21724 0.94842 0.97079 0.94899 1.19724 0.88045 0.83721 0.85012 1.90583 1.71005 1.49924 1.32843 1.42201 1.07861 1.53080 1.19957 1.19437 0.79626 1.35831 1.08407 0.86306 1.25042 0.95437 0.97721 0.98011 1.69626 1.05079 1.43380 1.34152 0.86662 0.79687 0.79898 0.83081 1.19700 1.20205 1.19455 1.45760 1.67852 1.13803 1.09548 1.17310 0.76276 0.85630 0.82224 1.90754 1.51720 1.15618 1.85316 1.20387 1.14828 0.94952 0.94152 1.22073 1.05509 0.95102 0.96480 1.21790 1.09014 0.90430 0.93324 1.41642 1.51904 1.09025 1.12375 0.74649 1.21823 0.99994 0.94504 0.89951 0.92653 0.91545 0.91853 0.89524 0.95029 0.82929 0.89366 0.93784 0.79713 0.91646 0.76949 0.83764 0.81389 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.15 1.72 2.88 -67.93 -0.20 1.53 16 3 H 0.10 1.42 7.58 -51.92 -0.39 1.03 16 4 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 5 N -0.67 -10.45 6.12 -115.06 -0.70 -11.16 16 6 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 7 C 0.45 10.29 7.82 -10.99 -0.09 10.21 16 8 O -0.56 -15.38 15.78 5.54 0.09 -15.29 16 9 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 12 C 0.04 1.12 5.50 -17.46 -0.10 1.02 16 13 N -0.88 -25.92 13.96 55.50 0.77 -25.14 16 14 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 N -0.72 -8.71 4.35 -54.93 -0.24 -8.95 16 19 C 0.60 8.56 7.77 -12.59 -0.10 8.46 16 20 O -0.55 -9.68 16.58 5.25 0.09 -9.59 16 21 C -0.23 -2.86 6.29 -103.35 -0.65 -3.51 16 22 C -0.17 -1.72 10.56 -37.50 -0.40 -2.11 16 23 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 24 N -0.55 -4.05 5.90 -12.85 -0.08 -4.13 16 25 H 0.42 1.55 8.96 -40.82 -0.37 1.19 16 26 C 0.07 0.74 11.69 -16.85 -0.20 0.55 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.35 5.73 7.28 -39.29 -0.29 5.44 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.40 4.09 7.28 -40.82 -0.30 3.80 16 38 H 0.14 1.26 7.70 -52.49 -0.40 0.85 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.18 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -37.15 345.11 -6.75 -43.90 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -5.34 Total: 17.61 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.77 Total: 7.07 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.30 Total: -63.57 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.88 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.15 -6.75 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754268364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.638 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds