Wall clock time and date at job start Tue Mar 31 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34945 * 126.54356 * 2 1 4 4 O 1.35209 * 125.48985 * 0.21980 * 3 2 1 5 5 N 1.31533 * 109.01726 * 180.26616 * 3 2 1 6 6 C 1.33228 * 109.75690 * 0.02562 * 5 3 2 7 7 C 1.36714 * 107.96273 * 359.97438 * 6 5 3 8 8 C 1.46386 * 126.82592 * 180.02562 * 7 6 5 9 9 O 1.21730 * 120.00553 * 185.01115 * 8 7 6 10 10 N 1.34783 * 119.99675 * 5.00721 * 8 7 6 11 11 C 1.46500 * 119.99953 * 185.31150 * 10 8 7 12 12 H 1.09004 * 109.46970 * 325.00349 * 11 10 8 13 13 C 1.52996 * 109.47248 * 205.00085 * 11 10 8 14 14 N 1.46502 * 109.47154 * 54.99721 * 13 11 10 15 15 C 1.36934 * 120.00120 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99951 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00153 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99564 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99985 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46950 * 60.00561 * 19 17 15 21 21 H 1.48501 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47321 * 300.00410 * 19 17 15 23 23 C 1.53000 * 109.46877 * 85.00274 * 11 10 8 24 24 C 1.53005 * 117.50185 * 8.74450 * 23 11 10 25 25 C 1.53008 * 117.49764 * 300.08392 * 23 11 10 26 26 H 1.09002 * 109.46456 * 264.63542 * 1 2 3 27 27 H 1.09003 * 109.47116 * 24.63007 * 1 2 3 28 28 H 1.08991 * 109.47271 * 144.63520 * 1 2 3 29 29 H 0.96701 * 113.99704 * 90.00036 * 4 3 2 30 30 H 1.07996 * 126.01480 * 180.02562 * 6 5 3 31 31 H 0.97000 * 120.00198 * 5.31307 * 10 8 7 32 32 H 1.09000 * 109.47461 * 175.00132 * 13 11 10 33 33 H 1.09007 * 109.46871 * 295.00215 * 13 11 10 34 34 H 0.96996 * 120.00012 * 0.02562 * 14 13 11 35 35 H 0.97002 * 119.99462 * 179.97438 * 18 17 15 36 36 H 1.08995 * 115.55056 * 154.41865 * 23 11 10 37 37 H 1.08997 * 117.49403 * 0.02562 * 24 23 11 38 38 H 1.08995 * 117.49883 * 145.02511 * 24 23 11 39 39 H 1.08998 * 117.49626 * 214.97811 * 25 23 11 40 40 H 1.08994 * 117.50001 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2686 1.0842 0.0000 4 8 1.8515 2.3703 0.0042 5 7 3.5228 0.6881 -0.0058 6 6 3.5747 -0.6432 -0.0102 7 6 2.2916 -1.1151 -0.0065 8 6 1.8726 -2.5177 -0.0088 9 8 0.6918 -2.8002 -0.0970 10 7 2.7943 -3.4965 0.0868 11 6 2.3883 -4.8991 -0.0322 12 1 1.4018 -5.0308 0.4124 13 6 3.3991 -5.7863 0.6973 14 7 3.5353 -5.3332 2.0838 15 6 4.3905 -5.9808 2.9348 16 1 4.9649 -6.8253 2.5838 17 6 4.5200 -5.5511 4.2485 18 7 3.8203 -4.5216 4.6761 19 14 5.6872 -6.4341 5.4092 20 1 7.0692 -6.3625 4.8705 21 1 5.6417 -5.7860 6.7445 22 1 5.2782 -7.8561 5.5354 23 6 2.3383 -5.2918 -1.5101 24 6 2.8917 -4.2908 -2.5263 25 6 1.3813 -4.5139 -2.4158 26 1 -0.3632 -0.0961 1.0232 27 1 -0.3633 0.9342 -0.4283 28 1 -0.3633 -0.8380 -0.5947 29 1 1.7329 2.7424 0.8889 30 1 4.4723 -1.2437 -0.0150 31 1 3.7264 -3.2723 0.2345 32 1 3.0513 -6.8192 0.6850 33 1 4.3657 -5.7224 0.1976 34 1 3.0191 -4.5749 2.3992 35 1 3.9105 -4.2216 5.5941 36 1 2.4796 -6.3520 -1.7198 37 1 3.2919 -3.3526 -2.1418 38 1 3.3968 -4.6924 -3.4047 39 1 0.8935 -5.0624 -3.2216 40 1 0.7878 -3.7222 -1.9588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754448407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:57 Heat of formation + Delta-G solvation = 36.739165 kcal Electronic energy + Delta-G solvation = -24097.427988 eV Core-core repulsion = 20529.587424 eV Total energy + Delta-G solvation = -3567.840564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.28923 -39.82626 -37.60446 -37.00716 -34.95411 -34.25699 -33.28981 -31.35338 -29.55426 -27.81662 -27.15569 -24.17023 -23.27401 -22.29003 -21.77929 -21.48131 -20.32768 -19.70977 -18.72967 -17.60229 -17.05949 -16.62168 -16.18119 -15.84627 -15.36886 -14.84083 -14.59743 -14.31547 -14.15231 -13.58962 -13.43486 -13.23193 -12.94328 -12.82788 -12.74714 -12.33172 -12.12881 -11.70163 -11.40503 -11.25266 -10.91738 -10.81758 -10.39041 -10.25032 -10.11929 -9.88020 -9.83006 -9.72701 -9.60459 -8.93836 -8.81885 -8.48524 -6.98728 -5.79734 -3.09855 1.16768 2.09508 2.59648 3.35763 3.42343 3.44220 3.47214 3.48107 3.68898 4.01368 4.53640 4.62921 4.68120 4.87542 5.00184 5.08620 5.12993 5.15628 5.28040 5.43235 5.51638 5.53011 5.70043 5.81730 5.88852 5.97236 5.97552 6.18851 6.28368 6.29895 6.36813 6.42181 6.43602 6.64594 6.85097 7.34616 7.64173 7.66243 7.76356 8.33799 8.37984 9.49823 10.04816 10.40023 11.42400 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.004889 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.906552 B = 5726.262952 C = 7155.427744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.427 5.427 3 C 0.389 3.611 4 O -0.442 6.442 5 N -0.486 5.486 6 C 0.057 3.943 7 C -0.071 4.071 8 C 0.598 3.402 9 O -0.548 6.548 10 N -0.693 5.693 11 C 0.171 3.829 12 H 0.095 0.905 13 C 0.148 3.852 14 N -0.732 5.732 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.186 4.186 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.404 0.596 30 H 0.187 0.813 31 H 0.408 0.592 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 8.373 -12.620 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.120 5.120 3 C 0.090 3.910 4 O -0.243 6.243 5 N -0.215 5.215 6 C -0.098 4.098 7 C -0.187 4.187 8 C 0.385 3.615 9 O -0.428 6.428 10 N -0.343 5.343 11 C 0.066 3.934 12 H 0.113 0.887 13 C 0.020 3.980 14 N -0.377 5.377 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.180 4.180 24 C -0.214 4.214 25 C -0.223 4.223 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.261 0.739 30 H 0.204 0.796 31 H 0.244 0.756 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.868 8.651 -13.211 16.847 hybrid contribution 0.121 -0.429 1.445 1.512 sum -5.747 8.223 -11.766 15.462 Atomic orbital electron populations 1.22251 0.75291 1.05201 1.04716 1.45585 1.08355 1.05569 1.52523 1.20205 0.84556 0.81325 1.04889 1.84784 1.87057 1.18120 1.34305 1.70291 1.16371 1.12895 1.21900 1.22586 0.95688 0.90132 1.01369 1.20651 0.91014 0.88476 1.18535 1.16548 0.85736 0.82874 0.76359 1.90748 1.16771 1.83871 1.51390 1.45609 1.11240 1.05746 1.71707 1.20809 1.00709 0.79192 0.92662 0.88748 1.20922 0.95211 0.95289 0.86612 1.42338 1.51669 1.38070 1.05581 1.19157 1.16587 1.10273 0.91468 0.91133 1.24743 1.00200 0.98399 0.97326 1.69659 1.44105 1.27442 1.16690 0.86265 0.80671 0.78875 0.80325 1.21201 1.21741 1.21273 1.22718 1.05360 0.97810 0.92076 1.22919 0.96690 1.01120 1.00660 1.23223 0.92818 1.04074 1.02145 0.89982 0.89408 0.87713 0.73877 0.79646 0.75586 0.94640 0.95391 0.78003 0.93447 0.87000 0.88888 0.89330 0.89589 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.58 59.85 0.63 1.33 16 2 N -0.43 -5.67 3.20 -122.12 -0.39 -6.06 16 3 C 0.39 5.20 9.01 -89.60 -0.81 4.39 16 4 O -0.44 -4.46 13.45 -17.32 -0.23 -4.69 16 5 N -0.49 -7.35 11.22 -14.62 -0.16 -7.51 16 6 C 0.06 0.81 11.35 -17.50 -0.20 0.61 16 7 C -0.07 -1.04 6.92 -81.98 -0.57 -1.61 16 8 C 0.60 9.46 6.44 -12.98 -0.08 9.37 16 9 O -0.55 -9.57 12.39 5.16 0.06 -9.51 16 10 N -0.69 -10.54 3.03 -55.20 -0.17 -10.70 16 11 C 0.17 2.72 2.61 -67.93 -0.18 2.54 16 12 H 0.09 1.71 7.51 -51.93 -0.39 1.32 16 13 C 0.15 2.73 5.80 -4.04 -0.02 2.71 16 14 N -0.73 -17.51 5.43 -59.91 -0.33 -17.83 16 15 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 19 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C -0.16 -2.13 5.71 -90.61 -0.52 -2.65 16 24 C -0.18 -2.16 9.74 -26.69 -0.26 -2.42 16 25 C -0.19 -2.43 9.84 -26.68 -0.26 -2.69 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 28 H 0.10 1.20 6.70 -51.93 -0.35 0.85 16 29 H 0.40 2.02 9.06 45.56 0.41 2.44 16 30 H 0.19 2.20 7.49 -52.49 -0.39 1.80 16 31 H 0.41 5.95 7.57 -40.82 -0.31 5.64 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 37 H 0.09 1.17 6.67 -51.93 -0.35 0.83 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.64 5.25 -51.93 -0.27 1.37 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -33.49 336.70 -7.40 -40.88 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.44 Total: 15.82 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.51 Total: 4.49 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.32 Total: -69.01 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.17 Total: -14.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.49 -7.40 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754448407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.623 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds