Wall clock time and date at job start Tue Mar 31 2020 03:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34756 * 117.00181 * 2 1 4 4 O 1.21516 * 119.99334 * 0.02562 * 3 2 1 5 5 C 1.47379 * 120.00201 * 180.02562 * 3 2 1 6 6 C 1.36662 * 125.78169 * 179.97438 * 5 3 2 7 7 N 1.34785 * 106.83965 * 180.02562 * 6 5 3 8 8 C 1.46500 * 126.58846 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.87434 * 157.38932 * 8 7 6 10 10 C 1.55139 * 110.99257 * 33.54026 * 8 7 6 11 11 C 1.54314 * 103.01791 * 206.25780 * 10 8 7 12 12 N 1.47449 * 107.23319 * 22.28416 * 11 10 8 13 13 C 1.46907 * 110.99912 * 123.25857 * 12 11 10 14 14 C 1.53004 * 109.47025 * 69.87373 * 13 12 11 15 15 C 1.50695 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.47836 * 108.56743 * 0.99078 * 12 11 10 24 24 N 1.40212 * 106.82525 * 0.26018 * 7 6 5 25 25 N 1.28761 * 108.38072 * 359.55622 * 24 7 6 26 26 H 1.08998 * 109.47233 * 59.99701 * 1 2 3 27 27 H 1.08998 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47057 * 299.99742 * 1 2 3 29 29 H 1.08000 * 126.58665 * 0.04299 * 6 5 3 30 30 H 1.08998 * 110.70576 * 87.87433 * 10 8 7 31 31 H 1.08998 * 110.85402 * 324.70678 * 10 8 7 32 32 H 1.08994 * 109.89169 * 262.87657 * 11 10 8 33 33 H 1.09004 * 110.02643 * 141.76285 * 11 10 8 34 34 H 1.09000 * 109.46806 * 309.87449 * 13 12 11 35 35 H 1.08997 * 109.46869 * 189.86954 * 13 12 11 36 36 H 1.08992 * 109.47421 * 60.00076 * 14 13 12 37 37 H 1.08997 * 109.46955 * 299.99529 * 14 13 12 38 38 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.37787 * 94.73270 * 23 12 11 40 40 H 1.09000 * 110.37260 * 217.07887 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5355 1.2778 -0.0006 6 6 4.2755 2.4268 -0.0011 7 7 5.5715 2.0566 -0.0021 8 6 6.7342 2.9478 -0.0024 9 1 7.6147 2.4377 0.3884 10 6 6.4414 4.2437 0.7986 11 6 7.3958 5.2724 0.1564 12 7 7.7255 4.7791 -1.1934 13 6 7.3782 5.7741 -2.2169 14 6 8.3313 6.9665 -2.1132 15 6 7.9746 7.9874 -3.1627 16 1 7.1476 7.8061 -3.8334 17 6 8.7000 9.1557 -3.2627 18 7 8.3889 10.0465 -4.1789 19 14 10.1253 9.4726 -2.0977 20 1 11.3772 8.9368 -2.6898 21 1 10.2682 10.9342 -1.8766 22 1 9.8634 8.7991 -0.8004 23 6 7.0017 3.5103 -1.4208 24 7 5.5931 0.6546 -0.0082 25 7 4.3776 0.2298 -0.0012 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8949 3.4375 -0.0006 30 1 6.6768 4.1060 1.8539 31 1 5.4031 4.5509 0.6736 32 1 8.3044 5.3576 0.7523 33 1 6.9057 6.2436 0.0868 34 1 6.3540 6.1131 -2.0613 35 1 7.4657 5.3240 -3.2057 36 1 9.3555 6.6276 -2.2688 37 1 8.2438 7.4167 -1.1244 38 1 8.8995 10.8682 -4.2495 39 1 6.0608 3.6976 -1.9384 40 1 7.6195 2.8183 -1.9932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375212629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:15 Heat of formation + Delta-G solvation = 22.919408 kcal Electronic energy + Delta-G solvation = -22954.166142 eV Core-core repulsion = 19385.726309 eV Total energy + Delta-G solvation = -3568.439833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.63909 -40.41581 -39.22848 -36.75178 -35.08646 -33.19718 -31.62061 -31.51460 -29.52579 -28.78261 -27.92723 -24.86840 -24.39706 -23.44258 -21.78887 -21.16440 -21.08050 -19.89024 -18.51486 -17.39256 -17.01672 -16.86804 -16.48028 -16.32282 -15.69065 -15.17599 -14.59669 -14.32692 -13.99885 -13.76121 -13.70570 -13.52261 -13.45073 -12.79158 -12.60155 -12.42223 -12.31557 -12.22504 -11.81933 -11.50885 -11.45883 -11.19963 -11.11772 -11.03869 -10.90430 -10.64816 -10.24765 -9.91942 -9.85758 -9.67370 -9.31432 -8.61289 -8.21779 -6.11826 -4.11224 0.69786 1.21031 1.55492 2.34685 2.69372 3.26866 3.34339 3.37110 3.80052 3.83497 4.05616 4.20419 4.33104 4.38895 4.47380 4.52060 4.74451 4.79297 4.87567 4.87809 5.09511 5.15183 5.22513 5.29494 5.34705 5.44958 5.61314 5.71800 5.82350 5.94248 5.95371 6.05662 6.10126 6.58174 6.89646 6.98188 7.29261 7.30235 7.40137 7.66671 7.72318 8.43432 8.91363 9.49873 11.01349 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.027113 B = 0.002809 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.468529 B = 9966.908499 C =10546.577759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.340 6.340 3 C 0.559 3.441 4 O -0.504 6.504 5 C -0.095 4.095 6 C 0.108 3.892 7 N -0.342 5.342 8 C 0.134 3.866 9 H 0.135 0.865 10 C -0.152 4.152 11 C 0.043 3.957 12 N -0.525 5.525 13 C 0.065 3.935 14 C -0.005 4.005 15 C -0.525 4.525 16 H 0.071 0.929 17 C 0.068 3.932 18 N -0.902 5.902 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.036 3.964 24 N -0.055 5.055 25 N -0.185 5.185 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.206 0.794 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.054 0.946 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -17.835 11.971 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.402 3.598 4 O -0.391 6.391 5 C -0.232 4.232 6 C -0.049 4.049 7 N -0.124 5.124 8 C 0.032 3.968 9 H 0.152 0.848 10 C -0.191 4.191 11 C -0.085 4.085 12 N -0.250 5.250 13 C -0.062 4.062 14 C -0.043 4.043 15 C -0.564 4.564 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.093 4.093 24 N -0.035 5.035 25 N -0.059 5.059 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.968 -18.670 11.845 23.860 hybrid contribution -0.836 1.506 0.488 1.791 sum -9.804 -17.163 12.333 23.298 Atomic orbital electron populations 1.23354 0.75603 1.04039 1.02788 1.86639 1.23566 1.31566 1.83783 1.19405 0.86114 0.81865 0.72448 1.90901 1.65650 1.35953 1.46564 1.20141 0.92528 0.89725 1.20844 1.23268 0.83995 1.01364 0.96321 1.50615 1.06160 1.07864 1.47807 1.23063 0.85479 0.89021 0.99202 0.84771 1.23307 1.01819 0.93161 1.00840 1.22867 0.98236 0.97203 0.90190 1.63793 1.54872 1.03525 1.02834 1.22399 0.98222 0.92340 0.93249 1.19543 0.95202 0.92248 0.97313 1.21045 1.17071 1.01648 1.16619 0.91134 1.25006 0.97250 0.95844 0.95247 1.69912 1.40834 1.09362 1.33913 0.86738 0.83032 0.77167 0.82099 1.20184 1.21460 1.18968 1.23437 0.98656 0.93553 0.93630 1.82115 1.13365 0.86162 1.21884 1.74781 0.96670 1.25690 1.08808 0.91587 0.87725 0.91649 0.77701 0.89077 0.90198 0.89722 0.90671 0.94946 0.91172 0.95985 0.96594 0.92627 0.92743 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.34 -3.69 10.57 -40.64 -0.43 -4.12 16 3 C 0.56 6.70 7.96 34.45 0.27 6.98 16 4 O -0.50 -6.67 16.65 -19.28 -0.32 -6.99 16 5 C -0.10 -1.15 7.02 -83.57 -0.59 -1.73 16 6 C 0.11 1.11 10.38 -16.82 -0.17 0.93 16 7 N -0.34 -3.62 3.66 -52.48 -0.19 -3.81 16 8 C 0.13 1.28 4.18 -65.79 -0.27 1.00 16 9 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 10 C -0.15 -1.32 6.38 -24.91 -0.16 -1.48 16 11 C 0.04 0.52 6.21 -2.83 -0.02 0.50 16 12 N -0.53 -7.55 5.16 -231.25 -1.19 -8.75 16 13 C 0.06 1.17 4.47 -3.82 -0.02 1.15 16 14 C -0.01 -0.12 4.07 -27.88 -0.11 -0.23 16 15 C -0.53 -14.40 9.66 -34.44 -0.33 -14.73 16 16 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 19 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 C 0.04 0.42 6.38 -2.30 -0.01 0.41 16 24 N -0.05 -0.70 13.78 60.35 0.83 0.13 16 25 N -0.19 -2.46 12.39 32.83 0.41 -2.06 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.21 1.60 7.06 -52.49 -0.37 1.23 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.64 6.46 -51.93 -0.34 0.30 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.00 6.91 -51.93 -0.36 0.64 16 34 H 0.03 0.58 7.96 -51.93 -0.41 0.17 16 35 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.02 0.35 6.20 -51.93 -0.32 0.03 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.65 7.81 -51.93 -0.41 0.25 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -32.52 338.45 -5.70 -38.22 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -5.56 Total: -3.68 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.45 Total: -4.05 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.63 Total: -40.94 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.75 Total: -11.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.52 -5.70 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375212629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.141 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds