Wall clock time and date at job start Tue Mar 31 2020 03:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34756 * 117.00181 * 2 1 4 4 O 1.21516 * 119.99334 * 0.02562 * 3 2 1 5 5 C 1.47379 * 120.00201 * 180.02562 * 3 2 1 6 6 C 1.36662 * 125.78169 * 179.97438 * 5 3 2 7 7 N 1.34785 * 106.83965 * 180.02562 * 6 5 3 8 8 C 1.46500 * 126.58846 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.87434 * 157.38932 * 8 7 6 10 10 C 1.55139 * 110.99257 * 33.54026 * 8 7 6 11 11 C 1.54314 * 103.01791 * 206.25780 * 10 8 7 12 12 N 1.47449 * 107.23319 * 22.28416 * 11 10 8 13 13 C 1.46907 * 110.99912 * 123.25857 * 12 11 10 14 14 C 1.53004 * 109.47025 * 69.87373 * 13 12 11 15 15 C 1.50695 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.47836 * 108.56743 * 0.99078 * 12 11 10 24 24 N 1.40212 * 106.82525 * 0.26018 * 7 6 5 25 25 N 1.28761 * 108.38072 * 359.55622 * 24 7 6 26 26 H 1.08998 * 109.47233 * 59.99701 * 1 2 3 27 27 H 1.08998 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47057 * 299.99742 * 1 2 3 29 29 H 1.08000 * 126.58665 * 0.04299 * 6 5 3 30 30 H 1.08998 * 110.70576 * 87.87433 * 10 8 7 31 31 H 1.08998 * 110.85402 * 324.70678 * 10 8 7 32 32 H 1.08994 * 109.89169 * 262.87657 * 11 10 8 33 33 H 1.09004 * 110.02643 * 141.76285 * 11 10 8 34 34 H 1.09000 * 109.46806 * 309.87449 * 13 12 11 35 35 H 1.08997 * 109.46869 * 189.86954 * 13 12 11 36 36 H 1.08992 * 109.47421 * 60.00076 * 14 13 12 37 37 H 1.08997 * 109.46955 * 299.99529 * 14 13 12 38 38 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.37787 * 94.73270 * 23 12 11 40 40 H 1.09000 * 110.37260 * 217.07887 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5355 1.2778 -0.0006 6 6 4.2755 2.4268 -0.0011 7 7 5.5715 2.0566 -0.0021 8 6 6.7342 2.9478 -0.0024 9 1 7.6147 2.4377 0.3884 10 6 6.4414 4.2437 0.7986 11 6 7.3958 5.2724 0.1564 12 7 7.7255 4.7791 -1.1934 13 6 7.3782 5.7741 -2.2169 14 6 8.3313 6.9665 -2.1132 15 6 7.9746 7.9874 -3.1627 16 1 7.1476 7.8061 -3.8334 17 6 8.7000 9.1557 -3.2627 18 7 8.3889 10.0465 -4.1789 19 14 10.1253 9.4726 -2.0977 20 1 11.3772 8.9368 -2.6898 21 1 10.2682 10.9342 -1.8766 22 1 9.8634 8.7991 -0.8004 23 6 7.0017 3.5103 -1.4208 24 7 5.5931 0.6546 -0.0082 25 7 4.3776 0.2298 -0.0012 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.8949 3.4375 -0.0006 30 1 6.6768 4.1060 1.8539 31 1 5.4031 4.5509 0.6736 32 1 8.3044 5.3576 0.7523 33 1 6.9057 6.2436 0.0868 34 1 6.3540 6.1131 -2.0613 35 1 7.4657 5.3240 -3.2057 36 1 9.3555 6.6276 -2.2688 37 1 8.2438 7.4167 -1.1244 38 1 8.8995 10.8682 -4.2495 39 1 6.0608 3.6976 -1.9384 40 1 7.6195 2.8183 -1.9932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375212629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:14 Heat of formation + Delta-G solvation = -0.556441 kcal Electronic energy + Delta-G solvation = -22955.184131 eV Core-core repulsion = 19385.726309 eV Total energy + Delta-G solvation = -3569.457823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.51384 -41.26953 -40.22486 -37.60271 -36.28993 -34.94593 -33.06995 -32.41699 -30.75745 -29.81014 -28.64262 -26.43414 -25.24462 -24.39632 -23.18740 -22.07692 -21.94449 -21.19264 -19.39644 -18.97958 -18.21950 -17.70978 -17.42663 -17.23367 -16.59875 -16.37799 -16.08886 -15.51845 -15.01949 -14.92082 -14.80123 -14.59226 -14.43074 -14.28651 -13.67666 -13.42712 -13.28389 -13.19153 -12.97732 -12.86257 -12.66540 -12.37275 -12.00393 -11.93916 -11.85335 -11.84961 -11.77881 -11.64563 -11.39254 -11.33906 -10.76238 -10.58313 -9.35982 -8.29314 -6.34083 -0.13604 0.28402 0.73559 1.39333 1.39752 1.52080 1.57813 1.80286 2.37326 2.89682 3.03496 3.06893 3.12007 3.28733 3.58313 3.65835 3.73548 3.91245 4.09216 4.25777 4.28435 4.32859 4.35439 4.38969 4.47099 4.58242 4.70415 4.73501 4.81275 4.86243 4.96033 5.07438 5.15873 5.21654 5.27760 5.46428 5.62510 5.97907 6.00219 6.28005 6.43485 6.74418 6.77880 7.31077 8.87310 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.027113 B = 0.002809 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.468529 B = 9966.908499 C =10546.577759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.561 3.439 4 O -0.522 6.522 5 C -0.109 4.109 6 C 0.120 3.880 7 N -0.336 5.336 8 C 0.143 3.857 9 H 0.149 0.851 10 C -0.139 4.139 11 C 0.038 3.962 12 N -0.532 5.532 13 C 0.078 3.922 14 C 0.001 3.999 15 C -0.534 4.534 16 H 0.031 0.969 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.241 1.241 23 C 0.036 3.964 24 N -0.071 5.071 25 N -0.203 5.203 26 H 0.067 0.933 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.231 0.769 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.051 0.949 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -18.822 14.321 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.404 3.596 4 O -0.410 6.410 5 C -0.246 4.246 6 C -0.038 4.038 7 N -0.119 5.119 8 C 0.042 3.958 9 H 0.167 0.833 10 C -0.178 4.178 11 C -0.090 4.090 12 N -0.257 5.257 13 C -0.050 4.050 14 C -0.037 4.037 15 C -0.572 4.572 16 H 0.049 0.951 17 C -0.193 4.193 18 N -0.593 5.593 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.164 1.164 23 C -0.093 4.093 24 N -0.052 5.052 25 N -0.078 5.078 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.088 0.912 29 H 0.247 0.753 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.508 -19.703 14.211 25.740 hybrid contribution -1.087 1.774 -0.320 2.104 sum -9.594 -17.930 13.891 24.627 Atomic orbital electron populations 1.23680 0.73582 1.06106 1.03096 1.86629 1.25640 1.31043 1.83356 1.19445 0.86177 0.81970 0.71996 1.90884 1.66017 1.36467 1.47663 1.20342 0.92696 0.90127 1.21481 1.23658 0.83573 1.01933 0.94681 1.50633 1.06546 1.07342 1.47336 1.23052 0.85677 0.89343 0.97769 0.83315 1.23265 1.01589 0.91210 1.01777 1.22941 0.99452 0.97513 0.89087 1.63653 1.55620 1.03408 1.03010 1.22023 0.96849 0.91894 0.94190 1.19414 0.95953 0.92592 0.95741 1.21428 1.15699 1.03051 1.17035 0.95101 1.26016 1.00516 0.95598 0.97147 1.70073 1.42710 1.10200 1.36286 0.85614 0.78994 0.77192 0.80561 1.19499 1.21274 1.16404 1.23415 0.98267 0.92339 0.95237 1.82071 1.13240 0.87217 1.22637 1.74760 0.97075 1.26538 1.09401 0.91461 0.84863 0.91178 0.75305 0.86469 0.89190 0.88760 0.92043 0.95312 0.92332 0.96111 0.95695 0.92507 0.93099 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.35 -7.31 10.57 -56.66 -0.60 -7.90 16 3 C 0.56 12.95 7.96 70.23 0.56 13.51 16 4 O -0.52 -13.30 16.65 19.79 0.33 -12.98 16 5 C -0.11 -2.49 7.02 40.78 0.29 -2.20 16 6 C 0.12 2.18 10.38 83.87 0.87 3.05 16 7 N -0.34 -6.32 3.66 -319.95 -1.17 -7.49 16 8 C 0.14 2.28 4.18 46.38 0.19 2.48 16 9 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 10 C -0.14 -1.91 6.38 31.77 0.20 -1.70 16 11 C 0.04 0.80 6.21 86.64 0.54 1.34 16 12 N -0.53 -14.25 5.16 -885.53 -4.57 -18.82 16 13 C 0.08 2.79 4.47 86.30 0.39 3.17 16 14 C 0.00 0.04 4.07 29.85 0.12 0.16 16 15 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 16 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 17 C 0.00 0.23 5.47 84.66 0.46 0.69 16 18 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 19 Si 0.95 43.07 27.47 68.60 1.88 44.95 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 23 C 0.04 0.77 6.38 86.78 0.55 1.33 16 24 N -0.07 -1.72 13.78 37.02 0.51 -1.21 16 25 N -0.20 -5.22 12.39 -50.04 -0.62 -5.84 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.23 2.91 7.06 -2.91 -0.02 2.89 16 30 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.09 6.46 -2.39 -0.02 1.08 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.50 6.91 -2.38 -0.02 1.48 16 34 H 0.03 1.03 7.96 -2.39 -0.02 1.01 16 35 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 36 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 37 H 0.02 1.05 6.20 -2.39 -0.01 1.04 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.05 1.14 7.81 -2.39 -0.02 1.12 16 40 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -71.77 338.45 2.68 -69.09 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 0.99 Total: 5.06 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 5.62 Total: -6.19 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -5.55 Total: -92.03 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.27 Total: -20.88 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -71.77 2.68 -69.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375212629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.532 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds