Wall clock time and date at job start Tue Mar 31 2020 03:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47179 * 300.00738 * 3 2 1 6 6 H 1.48506 * 109.46912 * 60.00344 * 3 2 1 7 7 C 1.37876 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42891 * 112.94568 * 309.66694 * 9 7 2 11 11 C 1.53954 * 113.74059 * 81.25853 * 9 7 2 12 12 N 1.47931 * 85.99426 * 138.00296 * 11 9 7 13 13 C 1.34777 * 134.50053 * 155.35722 * 12 11 9 14 14 O 1.21275 * 119.99912 * 176.25477 * 13 12 11 15 15 C 1.50705 * 119.99629 * 356.25558 * 13 12 11 16 16 H 1.09007 * 109.46749 * 209.87132 * 15 13 12 17 17 C 1.52995 * 109.47205 * 89.87227 * 15 13 12 18 18 C 1.53000 * 117.50001 * 131.56865 * 17 15 13 19 19 C 1.52998 * 60.00312 * 252.50800 * 18 17 15 20 20 N 1.46897 * 109.47465 * 329.86612 * 15 13 12 21 21 C 1.48532 * 110.99996 * 177.60457 * 20 15 13 22 22 C 1.54938 * 103.22581 * 159.72340 * 21 20 15 23 23 C 1.54590 * 102.92310 * 322.58753 * 22 21 20 24 24 C 1.47897 * 111.00142 * 295.00301 * 20 15 13 25 25 C 1.47579 * 91.00545 * 335.35716 * 12 11 9 26 26 H 0.97006 * 120.00330 * 359.97438 * 1 2 3 27 27 H 0.96699 * 114.00558 * 50.33380 * 10 9 7 28 28 H 1.08997 * 113.76482 * 252.35688 * 11 9 7 29 29 H 1.09002 * 113.77170 * 23.75880 * 11 9 7 30 30 H 1.09003 * 115.55228 * 277.27968 * 17 15 13 31 31 H 1.09001 * 117.50187 * 0.02562 * 18 17 15 32 32 H 1.09005 * 117.49490 * 145.02139 * 18 17 15 33 33 H 1.08993 * 117.50254 * 252.51037 * 19 18 17 34 34 H 1.09005 * 117.49885 * 107.48285 * 19 18 17 35 35 H 1.08999 * 110.66600 * 278.15648 * 21 20 15 36 36 H 1.08994 * 110.66523 * 41.28705 * 21 20 15 37 37 H 1.08999 * 110.72472 * 204.22548 * 22 21 20 38 38 H 1.09006 * 110.72168 * 80.94425 * 22 21 20 39 39 H 1.08998 * 110.30959 * 263.04131 * 23 22 21 40 40 H 1.08995 * 110.31249 * 140.87199 * 23 22 21 41 41 H 1.08997 * 109.92164 * 333.51052 * 24 20 15 42 42 H 1.09006 * 109.91564 * 94.60536 * 24 20 15 43 43 H 1.09002 * 113.76858 * 270.33392 * 25 12 11 44 44 H 1.09002 * 113.77025 * 138.94145 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2455 -2.5618 1.0127 11 6 0.7551 -2.9285 -1.3933 12 7 1.1898 -4.2906 -1.0140 13 6 0.8398 -5.5348 -1.3963 14 8 1.4295 -6.4952 -0.9484 15 6 -0.2843 -5.7323 -2.3804 16 1 -0.7731 -6.6872 -2.1867 17 6 0.2768 -5.7260 -3.8037 18 6 -0.1591 -6.8548 -4.7400 19 6 1.2641 -6.8330 -4.1788 20 7 -1.2603 -4.6442 -2.2339 21 6 -2.3557 -4.7742 -3.2286 22 6 -3.4963 -3.9254 -2.6128 23 6 -3.3635 -4.2136 -1.0998 24 6 -1.9125 -4.6921 -0.9074 25 6 2.1608 -3.7400 -0.0486 26 1 -0.4851 0.8401 0.0004 27 1 -0.3467 -1.7975 1.0272 28 1 -0.3224 -2.8302 -1.5255 29 1 1.3269 -2.4979 -2.2154 30 1 0.4350 -4.7407 -4.2423 31 1 -0.8460 -7.6018 -4.3421 32 1 -0.2879 -6.6122 -5.7949 33 1 2.0716 -6.5761 -4.8644 34 1 1.5139 -7.5658 -3.4115 35 1 -2.0504 -4.3669 -4.1924 36 1 -2.6622 -5.8153 -3.3294 37 1 -4.4664 -4.2552 -2.9846 38 1 -3.3430 -2.8660 -2.8186 39 1 -4.0623 -4.9949 -0.8007 40 1 -3.5417 -3.3051 -0.5245 41 1 -1.9056 -5.7135 -0.5269 42 1 -1.3903 -4.0339 -0.2129 43 1 3.1446 -3.5473 -0.4765 44 1 2.2048 -4.2892 0.8920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526018540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:24 Heat of formation + Delta-G solvation = -9.832876 kcal Electronic energy + Delta-G solvation = -25722.809303 eV Core-core repulsion = 22256.489567 eV Total energy + Delta-G solvation = -3466.319736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11034 -38.35576 -37.32549 -36.43364 -33.80766 -32.14058 -31.94785 -28.81068 -28.34869 -26.51878 -25.04003 -24.85306 -22.37509 -21.60688 -21.05266 -20.23621 -19.66827 -18.12847 -17.25890 -16.59403 -15.90984 -15.82506 -15.27519 -14.93822 -14.71084 -14.27714 -14.03707 -13.84569 -13.46868 -12.97030 -12.59146 -12.43710 -12.26422 -12.14147 -11.88396 -11.81780 -11.48374 -11.47970 -11.12265 -11.05710 -11.01339 -10.95059 -10.81213 -10.44781 -10.41493 -10.29630 -10.20940 -10.13979 -9.44095 -9.00694 -8.67776 -8.41088 -8.00576 -7.66577 -6.31190 -4.39822 3.17450 3.19241 3.27038 3.30987 3.64108 3.93315 4.03522 4.25058 4.73858 4.82024 4.90335 4.94332 4.99659 5.05106 5.19592 5.30890 5.38167 5.44617 5.62355 5.65466 5.69038 5.73879 5.85800 5.92759 5.98868 5.99688 6.12217 6.17571 6.22083 6.29593 6.32428 6.33820 6.50210 6.54774 6.76819 6.80275 7.04425 7.12555 7.15756 7.28824 7.71249 7.93457 8.61949 8.64866 8.89983 9.30379 9.50823 10.75175 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.005742 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.652081 B = 4875.335344 C = 5559.716215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.235 3.765 10 O -0.573 6.573 11 C 0.090 3.910 12 N -0.614 5.614 13 C 0.540 3.460 14 O -0.576 6.576 15 C 0.099 3.901 16 H 0.066 0.934 17 C -0.139 4.139 18 C -0.176 4.176 19 C -0.171 4.171 20 N -0.497 5.497 21 C 0.039 3.961 22 C -0.122 4.122 23 C -0.127 4.127 24 C 0.027 3.973 25 C 0.107 3.893 26 H 0.270 0.730 27 H 0.390 0.610 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -6.615 -8.005 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.385 6.385 11 C -0.032 4.032 12 N -0.345 5.345 13 C 0.328 3.672 14 O -0.457 6.457 15 C -0.012 4.012 16 H 0.083 0.917 17 C -0.158 4.158 18 C -0.213 4.213 19 C -0.209 4.209 20 N -0.222 5.222 21 C -0.089 4.089 22 C -0.160 4.160 23 C -0.165 4.165 24 C -0.100 4.100 25 C -0.015 4.015 26 H 0.080 0.920 27 H 0.245 0.755 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.418 -7.254 -7.748 11.916 hybrid contribution -0.217 0.599 -0.162 0.658 sum -5.635 -6.654 -7.909 11.773 Atomic orbital electron populations 1.69411 1.05995 1.27748 1.50385 1.25016 0.94994 0.99577 0.93311 0.86360 0.80152 0.82708 0.77739 1.19588 1.20791 1.20773 1.21538 0.93834 0.90163 1.51736 0.91359 1.19900 0.85620 0.90778 0.84397 1.86028 1.47100 1.49697 1.55647 1.24394 1.02206 0.76055 1.00554 1.50148 1.38824 1.05133 1.40390 1.19800 0.84285 0.82004 0.81123 1.90626 1.56838 1.40295 1.57945 1.21541 0.92379 0.93866 0.93450 0.91681 1.22044 1.04360 0.95699 0.93683 1.23011 0.98330 1.01087 0.98877 1.22977 0.92726 1.01718 1.03452 1.64910 1.12411 1.41430 1.03437 1.23187 0.90910 0.98174 0.96616 1.22472 0.97441 1.01039 0.95088 1.22353 0.95834 1.01546 0.96777 1.23068 0.94439 1.00630 0.91903 1.23474 0.93500 0.93161 0.91391 0.91957 0.75529 0.88336 0.91284 0.86547 0.89106 0.88682 0.88669 0.88124 0.90031 0.94176 0.91548 0.90389 0.92168 0.90531 0.94601 0.87633 0.90046 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.27 11.20 55.43 0.62 -21.65 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 3 Si 0.90 19.52 29.54 -169.99 -5.02 14.49 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.41 8.61 -34.44 -0.30 -13.70 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.23 5.55 1.40 -90.84 -0.13 5.43 16 10 O -0.57 -14.20 12.65 -35.23 -0.45 -14.65 16 11 C 0.09 1.94 6.83 -2.77 -0.02 1.93 16 12 N -0.61 -13.09 3.31 -177.99 -0.59 -13.68 16 13 C 0.54 11.19 6.25 -10.98 -0.07 11.12 16 14 O -0.58 -13.59 17.69 5.56 0.10 -13.49 16 15 C 0.10 1.65 1.79 -68.87 -0.12 1.53 16 16 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 17 C -0.14 -1.98 4.26 -90.62 -0.39 -2.36 16 18 C -0.18 -2.00 10.18 -26.73 -0.27 -2.27 16 19 C -0.17 -2.29 9.95 -26.73 -0.27 -2.56 16 20 N -0.50 -7.81 2.64 -223.89 -0.59 -8.40 16 21 C 0.04 0.49 5.72 -1.90 -0.01 0.48 16 22 C -0.12 -1.46 7.06 -24.87 -0.18 -1.64 16 23 C -0.13 -1.69 6.93 -25.38 -0.18 -1.86 16 24 C 0.03 0.44 5.31 -2.76 -0.01 0.43 16 25 C 0.11 2.38 8.23 -2.97 -0.02 2.36 16 26 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 27 H 0.39 9.81 6.60 45.56 0.30 10.11 16 28 H 0.10 2.14 5.33 -51.93 -0.28 1.86 16 29 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 30 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.52 8.00 -51.93 -0.42 1.10 16 35 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 36 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 42 H 0.11 2.08 6.10 -51.93 -0.32 1.76 16 43 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -27.19 349.15 -9.25 -36.44 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -6.52 Total: 15.08 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.06 Total: 0.59 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.56 Total: -43.72 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.35 Total: -28.14 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.19 -9.25 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526018540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.603 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds