Wall clock time and date at job start Tue Mar 31 2020 03:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47179 * 300.00738 * 3 2 1 6 6 H 1.48506 * 109.46912 * 60.00344 * 3 2 1 7 7 C 1.37876 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99753 * 359.97438 * 7 2 1 10 10 O 1.42891 * 112.94568 * 309.66694 * 9 7 2 11 11 C 1.53954 * 113.74059 * 81.25853 * 9 7 2 12 12 N 1.47931 * 85.99426 * 138.00296 * 11 9 7 13 13 C 1.34777 * 134.50053 * 155.35722 * 12 11 9 14 14 O 1.21275 * 119.99912 * 176.25477 * 13 12 11 15 15 C 1.50705 * 119.99629 * 356.25558 * 13 12 11 16 16 H 1.09007 * 109.46749 * 209.87132 * 15 13 12 17 17 C 1.52995 * 109.47205 * 89.87227 * 15 13 12 18 18 C 1.53000 * 117.50001 * 131.56865 * 17 15 13 19 19 C 1.52998 * 60.00312 * 252.50800 * 18 17 15 20 20 N 1.46897 * 109.47465 * 329.86612 * 15 13 12 21 21 C 1.48532 * 110.99996 * 177.60457 * 20 15 13 22 22 C 1.54938 * 103.22581 * 159.72340 * 21 20 15 23 23 C 1.54590 * 102.92310 * 322.58753 * 22 21 20 24 24 C 1.47897 * 111.00142 * 295.00301 * 20 15 13 25 25 C 1.47579 * 91.00545 * 335.35716 * 12 11 9 26 26 H 0.97006 * 120.00330 * 359.97438 * 1 2 3 27 27 H 0.96699 * 114.00558 * 50.33380 * 10 9 7 28 28 H 1.08997 * 113.76482 * 252.35688 * 11 9 7 29 29 H 1.09002 * 113.77170 * 23.75880 * 11 9 7 30 30 H 1.09003 * 115.55228 * 277.27968 * 17 15 13 31 31 H 1.09001 * 117.50187 * 0.02562 * 18 17 15 32 32 H 1.09005 * 117.49490 * 145.02139 * 18 17 15 33 33 H 1.08993 * 117.50254 * 252.51037 * 19 18 17 34 34 H 1.09005 * 117.49885 * 107.48285 * 19 18 17 35 35 H 1.08999 * 110.66600 * 278.15648 * 21 20 15 36 36 H 1.08994 * 110.66523 * 41.28705 * 21 20 15 37 37 H 1.08999 * 110.72472 * 204.22548 * 22 21 20 38 38 H 1.09006 * 110.72168 * 80.94425 * 22 21 20 39 39 H 1.08998 * 110.30959 * 263.04131 * 23 22 21 40 40 H 1.08995 * 110.31249 * 140.87199 * 23 22 21 41 41 H 1.08997 * 109.92164 * 333.51052 * 24 20 15 42 42 H 1.09006 * 109.91564 * 94.60536 * 24 20 15 43 43 H 1.09002 * 113.76858 * 270.33392 * 25 12 11 44 44 H 1.09002 * 113.77025 * 138.94145 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2455 -2.5618 1.0127 11 6 0.7551 -2.9285 -1.3933 12 7 1.1898 -4.2906 -1.0140 13 6 0.8398 -5.5348 -1.3963 14 8 1.4295 -6.4952 -0.9484 15 6 -0.2843 -5.7323 -2.3804 16 1 -0.7731 -6.6872 -2.1867 17 6 0.2768 -5.7260 -3.8037 18 6 -0.1591 -6.8548 -4.7400 19 6 1.2641 -6.8330 -4.1788 20 7 -1.2603 -4.6442 -2.2339 21 6 -2.3557 -4.7742 -3.2286 22 6 -3.4963 -3.9254 -2.6128 23 6 -3.3635 -4.2136 -1.0998 24 6 -1.9125 -4.6921 -0.9074 25 6 2.1608 -3.7400 -0.0486 26 1 -0.4851 0.8401 0.0004 27 1 -0.3467 -1.7975 1.0272 28 1 -0.3224 -2.8302 -1.5255 29 1 1.3269 -2.4979 -2.2154 30 1 0.4350 -4.7407 -4.2423 31 1 -0.8460 -7.6018 -4.3421 32 1 -0.2879 -6.6122 -5.7949 33 1 2.0716 -6.5761 -4.8644 34 1 1.5139 -7.5658 -3.4115 35 1 -2.0504 -4.3669 -4.1924 36 1 -2.6622 -5.8153 -3.3294 37 1 -4.4664 -4.2552 -2.9846 38 1 -3.3430 -2.8660 -2.8186 39 1 -4.0623 -4.9949 -0.8007 40 1 -3.5417 -3.3051 -0.5245 41 1 -1.9056 -5.7135 -0.5269 42 1 -1.3903 -4.0339 -0.2129 43 1 3.1446 -3.5473 -0.4765 44 1 2.2048 -4.2892 0.8920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526018540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:23 Heat of formation + Delta-G solvation = -26.700449 kcal Electronic energy + Delta-G solvation = -25723.540736 eV Core-core repulsion = 22256.489567 eV Total energy + Delta-G solvation = -3467.051168 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61753 -39.86204 -38.86307 -37.66962 -35.69689 -34.07892 -33.15937 -30.30124 -29.70881 -27.97866 -26.83493 -26.55729 -23.39044 -22.77527 -22.30697 -21.48834 -21.17971 -19.85472 -19.10810 -17.95475 -17.38927 -17.19504 -16.87360 -16.59094 -16.25630 -15.82232 -15.38958 -15.22793 -14.79150 -14.55705 -14.25601 -13.96883 -13.72222 -13.51979 -13.39895 -13.31028 -13.11462 -12.76838 -12.62820 -12.42576 -12.24308 -12.22083 -12.17845 -12.05496 -12.04043 -11.58773 -11.37436 -11.27997 -11.18018 -10.71194 -10.52903 -10.12433 -9.48300 -9.35173 -8.20343 -6.36025 1.46082 1.50823 1.58192 1.60887 2.04410 2.44058 2.75201 2.85112 3.01992 3.50982 3.69822 3.75477 3.81381 3.96563 3.99037 4.03485 4.11287 4.19795 4.35687 4.38101 4.49535 4.53533 4.63567 4.66686 4.72743 4.75192 4.92051 4.94254 4.97387 5.03148 5.04201 5.13077 5.17592 5.21515 5.25102 5.30512 5.37114 5.41964 5.78633 5.87543 5.96574 6.01664 6.67250 6.94185 7.19360 7.36815 7.52623 8.85220 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.005742 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.652081 B = 4875.335344 C = 5559.716215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.557 4.557 8 H 0.064 0.936 9 C 0.222 3.778 10 O -0.581 6.581 11 C 0.111 3.889 12 N -0.613 5.613 13 C 0.533 3.467 14 O -0.610 6.610 15 C 0.111 3.889 16 H 0.066 0.934 17 C -0.156 4.156 18 C -0.139 4.139 19 C -0.183 4.183 20 N -0.509 5.509 21 C 0.041 3.959 22 C -0.115 4.115 23 C -0.122 4.122 24 C 0.028 3.972 25 C 0.103 3.897 26 H 0.274 0.726 27 H 0.386 0.614 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -6.483 -10.195 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.163 4.163 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.595 4.595 8 H 0.082 0.918 9 C 0.181 3.819 10 O -0.393 6.393 11 C -0.011 4.011 12 N -0.344 5.344 13 C 0.323 3.677 14 O -0.493 6.493 15 C -0.001 4.001 16 H 0.083 0.917 17 C -0.174 4.174 18 C -0.176 4.176 19 C -0.220 4.220 20 N -0.234 5.234 21 C -0.086 4.086 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.100 4.100 25 C -0.020 4.020 26 H 0.084 0.916 27 H 0.240 0.760 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.642 -7.124 -9.951 13.925 hybrid contribution 0.174 0.526 0.580 0.802 sum -6.468 -6.598 -9.371 13.160 Atomic orbital electron populations 1.69470 1.06762 1.28573 1.50033 1.25638 0.95777 1.02094 0.92832 0.85438 0.78873 0.79162 0.77680 1.19661 1.20198 1.20740 1.21715 0.93837 0.91144 1.52850 0.91780 1.20074 0.85721 0.90971 0.85177 1.86024 1.47349 1.49487 1.56423 1.24088 1.01920 0.75881 0.99178 1.50141 1.38574 1.05519 1.40167 1.20667 0.84871 0.81009 0.81172 1.90596 1.58320 1.41074 1.59353 1.21393 0.91047 0.94040 0.93589 0.91656 1.21983 1.06159 0.96513 0.92792 1.23112 0.96330 0.98606 0.99554 1.22984 0.94514 1.00924 1.03593 1.64829 1.13559 1.41206 1.03825 1.23284 0.89873 0.99339 0.96078 1.22466 0.98687 1.00484 0.93633 1.22326 0.93973 1.01656 0.98079 1.22936 0.96116 0.99163 0.91762 1.23475 0.94214 0.92789 0.91491 0.91594 0.76004 0.88395 0.91388 0.86730 0.88256 0.85894 0.87437 0.90386 0.88840 0.92659 0.88541 0.91311 0.90192 0.91462 0.95513 0.91612 0.88904 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.18 11.20 21.45 0.24 -44.94 16 2 C 0.04 1.86 5.39 84.66 0.46 2.32 16 3 Si 0.96 39.70 29.54 68.60 2.03 41.73 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -28.26 8.61 25.60 0.22 -28.04 16 8 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.22 10.76 1.40 -10.88 -0.02 10.74 16 10 O -0.58 -29.84 12.65 -148.98 -1.88 -31.72 16 11 C 0.11 4.89 6.83 86.42 0.59 5.48 16 12 N -0.61 -26.80 3.31 -839.25 -2.78 -29.58 16 13 C 0.53 22.51 6.25 87.66 0.55 23.05 16 14 O -0.61 -29.58 17.69 -3.02 -0.05 -29.63 16 15 C 0.11 3.61 1.79 44.17 0.08 3.69 16 16 H 0.07 2.12 7.74 -2.38 -0.02 2.10 16 17 C -0.16 -4.15 4.26 -10.79 -0.05 -4.20 16 18 C -0.14 -2.69 10.18 30.59 0.31 -2.38 16 19 C -0.18 -4.62 9.95 30.60 0.30 -4.31 16 20 N -0.51 -15.55 2.64 -862.25 -2.28 -17.82 16 21 C 0.04 0.92 5.72 86.65 0.50 1.42 16 22 C -0.11 -2.43 7.06 31.80 0.22 -2.21 16 23 C -0.12 -3.09 6.93 31.47 0.22 -2.88 16 24 C 0.03 0.92 5.31 86.45 0.46 1.38 16 25 C 0.10 4.74 8.23 86.49 0.71 5.45 16 26 H 0.27 12.90 8.31 -92.70 -0.77 12.12 16 27 H 0.39 20.05 6.60 -74.06 -0.49 19.56 16 28 H 0.10 4.31 5.33 -2.39 -0.01 4.30 16 29 H 0.07 2.98 8.09 -2.39 -0.02 2.96 16 30 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 31 H 0.10 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.34 8.00 -2.38 -0.02 2.33 16 35 H 0.09 1.92 7.95 -2.39 -0.02 1.90 16 36 H 0.06 1.11 8.02 -2.39 -0.02 1.09 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.03 0.90 7.65 -2.39 -0.02 0.88 16 42 H 0.07 2.69 6.10 -2.38 -0.01 2.68 16 43 H 0.09 3.99 8.09 -2.39 -0.02 3.97 16 44 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -59.30 349.15 0.33 -58.96 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: 0.50 Total: 43.49 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.56 Total: 9.53 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.82 Total: -92.34 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.94 Total: -61.36 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -59.30 0.33 -58.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526018540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -59.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds