Wall clock time and date at job start Tue Mar 31 2020 03:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.55395 * 2 1 4 4 O 1.21288 * 119.99979 * 259.32002 * 3 2 1 5 5 N 1.34776 * 120.00170 * 79.30917 * 3 2 1 6 6 C 1.47484 * 125.66454 * 3.41046 * 5 3 2 7 7 C 1.55025 * 104.90147 * 204.02439 * 6 5 3 8 8 C 1.54518 * 101.52066 * 323.62286 * 7 6 5 9 9 C 1.47194 * 125.66132 * 183.10649 * 5 3 2 10 10 C 1.52506 * 110.05605 * 153.09979 * 8 7 6 11 11 N 1.47310 * 108.38413 * 72.02899 * 10 8 7 12 12 C 1.36933 * 121.06018 * 229.39683 * 11 10 8 13 13 H 1.07997 * 120.00139 * 150.98699 * 12 11 10 14 14 C 1.38815 * 120.00004 * 330.98417 * 12 11 10 15 15 N 1.31617 * 119.99550 * 348.27969 * 14 12 11 16 16 Si 1.86796 * 120.00357 * 168.28181 * 14 12 11 17 17 H 1.48498 * 109.47005 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47346 * 119.99769 * 16 14 12 19 19 H 1.48502 * 109.47216 * 240.00141 * 16 14 12 20 20 C 1.47158 * 117.88183 * 49.40883 * 11 10 8 21 21 C 1.53282 * 108.54303 * 308.89481 * 20 11 10 22 22 O 1.42067 * 110.33830 * 276.05613 * 8 7 6 23 23 C 1.53001 * 117.49571 * 145.66215 * 2 1 3 24 24 C 1.53001 * 60.03252 * 107.48325 * 23 2 1 25 25 H 1.09002 * 109.47193 * 269.88475 * 1 2 3 26 26 H 1.09006 * 109.46568 * 29.88433 * 1 2 3 27 27 H 1.08999 * 109.47033 * 149.88006 * 1 2 3 28 28 H 1.09001 * 110.35259 * 322.88616 * 6 5 3 29 29 H 1.09004 * 110.35078 * 85.16804 * 6 5 3 30 30 H 1.08997 * 111.01067 * 81.68512 * 7 6 5 31 31 H 1.08997 * 111.01324 * 205.52535 * 7 6 5 32 32 H 1.08997 * 109.90782 * 297.85900 * 9 5 3 33 33 H 1.08997 * 109.90794 * 59.12294 * 9 5 3 34 34 H 1.09005 * 109.68357 * 191.74843 * 10 8 7 35 35 H 1.08998 * 109.68496 * 312.26717 * 10 8 7 36 36 H 0.97008 * 120.00328 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.62659 * 68.60914 * 20 11 10 38 38 H 1.09003 * 109.62914 * 188.98614 * 20 11 10 39 39 H 1.09005 * 109.51200 * 172.80696 * 21 20 11 40 40 H 1.09005 * 109.51003 * 292.94917 * 21 20 11 41 41 H 1.08997 * 117.49970 * 214.98021 * 23 2 1 42 42 H 1.09006 * 117.50094 * 359.97438 * 23 2 1 43 43 H 1.08999 * 117.50119 * 107.50162 * 24 23 2 44 44 H 1.09005 * 117.49547 * 252.52495 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 8 2.6173 1.8227 -1.0322 5 7 2.2754 2.0609 1.1469 6 6 1.8525 1.5916 2.4796 7 6 1.5826 2.8849 3.2906 8 6 2.6893 3.8212 2.7557 9 6 2.8247 3.4202 1.2784 10 6 2.2496 5.2760 2.8819 11 7 2.2799 5.6486 4.3068 12 6 1.2109 6.2672 4.8981 13 1 1.0199 6.1256 5.9516 14 6 0.3727 7.0765 4.1435 15 7 0.7253 7.4367 2.9277 16 14 -1.2556 7.6543 4.8535 17 1 -1.4158 7.1145 6.2276 18 1 -1.2772 9.1385 4.8987 19 1 -2.3685 7.1688 3.9986 20 6 3.4956 5.3350 5.0744 21 6 3.8433 3.8584 4.8550 22 8 3.9074 3.5930 3.4502 23 6 2.2364 -1.1207 0.7656 24 6 2.2368 -1.1222 -0.7645 25 1 -0.3634 -0.0021 1.0277 26 1 -0.3633 0.8911 -0.5121 27 1 -0.3633 -0.8889 -0.5157 28 1 0.9427 0.9965 2.4008 29 1 2.6475 1.0101 2.9466 30 1 0.5926 3.2844 3.0710 31 1 1.7022 2.7080 4.3595 32 1 3.8742 3.4264 0.9844 33 1 2.2578 4.1115 0.6549 34 1 2.9311 5.9155 2.3208 35 1 1.2373 5.3886 2.4939 36 1 0.1395 8.0020 2.4001 37 1 4.3185 5.9603 4.7283 38 1 3.3171 5.5185 6.1340 39 1 4.8089 3.6401 5.3113 40 1 3.0754 3.2322 5.3092 41 1 3.1714 -0.8747 1.2688 42 1 1.6111 -1.8577 1.2696 43 1 3.1720 -0.8772 -1.2678 44 1 1.6114 -1.8600 -1.2671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972398872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:31 Heat of formation + Delta-G solvation = -19.825984 kcal Electronic energy + Delta-G solvation = -25294.051771 eV Core-core repulsion = 21827.298702 eV Total energy + Delta-G solvation = -3466.753069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42746 -39.11117 -36.79679 -36.00666 -34.47554 -31.48200 -31.21182 -29.52054 -28.89250 -27.48311 -25.95144 -23.87315 -23.14960 -22.61158 -21.93730 -21.03373 -19.00654 -18.45097 -17.14509 -16.79131 -16.04999 -15.70208 -15.38129 -14.94464 -14.48027 -14.42490 -14.22129 -13.79897 -13.46257 -13.39712 -13.00263 -12.72800 -12.64263 -12.55493 -12.41935 -12.18789 -11.96689 -11.69632 -11.35258 -11.09279 -10.97020 -10.90994 -10.69706 -10.67832 -10.28402 -10.26901 -10.17861 -10.01135 -9.59065 -9.56035 -9.04665 -8.59161 -8.43774 -6.74325 -5.87878 -3.35397 2.73053 3.03020 3.30307 3.38215 3.39947 3.55095 4.20217 4.38258 4.43556 4.56527 4.69256 4.85067 4.90878 5.06360 5.27228 5.35624 5.42128 5.43819 5.50446 5.54430 5.59884 5.66813 5.71197 5.74838 5.80800 5.84334 5.93798 5.96993 6.00600 6.06288 6.15911 6.28838 6.34438 6.49293 6.50998 6.61745 6.77152 7.04287 7.43720 7.67787 7.69829 7.89958 8.30514 8.31721 9.07567 9.69239 10.28118 11.20216 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.004705 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.809007 B = 5949.543807 C = 6568.368303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.153 4.153 3 C 0.562 3.438 4 O -0.542 6.542 5 N -0.607 5.607 6 C 0.105 3.895 7 C -0.145 4.145 8 C 0.085 3.915 9 C 0.125 3.875 10 C 0.165 3.835 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.068 0.932 14 C 0.006 3.994 15 N -0.904 5.904 16 Si 0.904 3.096 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.288 1.288 20 C 0.109 3.891 21 C 0.046 3.954 22 O -0.377 6.377 23 C -0.163 4.163 24 C -0.146 4.146 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -15.956 -0.824 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C 0.350 3.650 4 O -0.420 6.420 5 N -0.340 5.340 6 C -0.018 4.018 7 C -0.183 4.183 8 C 0.044 3.956 9 C 0.002 3.998 10 C 0.039 3.961 11 N -0.316 5.316 12 C -0.383 4.383 13 H 0.086 0.914 14 C -0.193 4.193 15 N -0.548 5.548 16 Si 0.734 3.266 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.018 4.018 21 C -0.032 4.032 22 O -0.297 6.297 23 C -0.201 4.201 24 C -0.183 4.183 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.456 -15.672 -1.630 15.824 hybrid contribution -1.017 0.556 0.564 1.289 sum 0.439 -15.116 -1.066 15.160 Atomic orbital electron populations 1.21257 0.89850 1.02833 1.02472 1.21376 0.96255 0.89155 1.08807 1.19164 0.78724 0.85088 0.82050 1.90694 1.48951 1.70665 1.31673 1.48523 1.61334 1.16712 1.07406 1.22405 0.99359 0.97572 0.82466 1.23192 1.00549 0.94138 1.00384 1.22677 0.84516 0.98646 0.89790 1.21809 0.99780 0.82638 0.95527 1.21190 1.02094 0.86794 0.86061 1.44033 1.12462 1.68756 1.06366 1.19196 1.02695 1.21833 0.94619 0.91417 1.25136 1.00079 0.97017 0.97106 1.69975 1.36526 1.37857 1.10424 0.86195 0.83593 0.78343 0.78478 1.20209 1.21558 1.21497 1.21600 0.90500 0.93000 0.96671 1.23101 1.00424 0.97884 0.81762 1.87680 1.33026 1.88515 1.20446 1.23112 1.02355 0.99694 0.94900 1.23074 1.02470 0.98487 0.94309 0.91548 0.91637 0.91507 0.90882 0.91561 0.89540 0.89382 0.90711 0.89712 0.95255 0.88488 0.93432 0.95591 0.91909 0.89969 0.93412 0.88434 0.87899 0.88229 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.15 -1.85 1.56 -155.62 -0.24 -2.09 16 3 C 0.56 9.20 6.96 -10.99 -0.08 9.13 16 4 O -0.54 -10.89 17.32 5.55 0.10 -10.79 16 5 N -0.61 -9.80 3.33 -170.66 -0.57 -10.36 16 6 C 0.10 1.45 6.25 -2.43 -0.02 1.43 16 7 C -0.14 -2.38 5.91 -24.86 -0.15 -2.53 16 8 C 0.09 1.61 0.83 -89.72 -0.07 1.53 16 9 C 0.12 2.27 6.25 -3.31 -0.02 2.25 16 10 C 0.16 3.80 3.90 -3.85 -0.02 3.79 16 11 N -0.59 -14.18 2.93 -172.18 -0.51 -14.68 16 12 C -0.25 -6.62 9.65 -15.06 -0.15 -6.77 16 13 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 14 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 15 N -0.90 -25.40 11.06 55.49 0.61 -24.79 16 16 Si 0.90 20.91 29.57 -169.99 -5.03 15.89 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.11 2.19 6.72 -3.54 -0.02 2.16 16 21 C 0.05 0.78 6.76 37.30 0.25 1.03 16 22 O -0.38 -7.10 10.21 -35.23 -0.36 -7.46 16 23 C -0.16 -1.57 9.40 -26.73 -0.25 -1.82 16 24 C -0.15 -1.51 9.80 -26.69 -0.26 -1.77 16 25 H 0.07 0.61 7.28 -51.93 -0.38 0.23 16 26 H 0.06 0.75 8.04 -51.93 -0.42 0.34 16 27 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 28 H 0.07 0.86 6.60 -51.93 -0.34 0.51 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 31 H 0.09 1.42 5.98 -51.93 -0.31 1.11 16 32 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 33 H 0.08 1.62 7.79 -51.93 -0.40 1.22 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 2.47 6.06 -51.93 -0.31 2.15 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.77 6.13 -51.93 -0.32 0.46 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -30.77 345.30 -8.36 -39.13 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.06 Total: 2.18 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.75 Total: 5.69 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.46 Total: -49.84 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.26 Total: -18.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.77 -8.36 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972398872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.305 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds