Wall clock time and date at job start Tue Mar 31 2020 03:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34783 * 120.62874 * 126.37163 * 5 4 2 7 7 O 1.21284 * 119.99853 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00028 * 180.02562 * 6 5 4 9 9 N 1.46492 * 109.47464 * 179.97438 * 8 6 5 10 10 C 1.34599 * 126.44156 * 124.99717 * 9 8 6 11 11 N 1.31073 * 106.67833 * 180.02562 * 10 9 8 12 12 N 1.28838 * 107.99284 * 0.02562 * 11 10 9 13 13 N 1.28739 * 109.39752 * 359.73277 * 12 11 10 14 14 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 15 15 C 1.53195 * 108.89273 * 53.53793 * 14 5 4 16 16 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 17 17 H 1.09007 * 109.45640 * 298.70737 * 16 2 1 18 18 N 1.46499 * 109.46160 * 58.66119 * 16 2 1 19 19 C 1.36928 * 120.00250 * 205.00378 * 18 16 2 20 20 H 1.08000 * 120.00193 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00515 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99431 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00596 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47200 * 59.99138 * 23 21 19 25 25 H 1.48495 * 109.47377 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46835 * 299.99442 * 23 21 19 27 27 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 28 28 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 29 29 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 30 30 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 31 31 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 32 32 H 1.09005 * 109.46926 * 300.00024 * 8 6 5 33 33 H 1.09006 * 109.47172 * 59.99213 * 8 6 5 34 34 H 1.07996 * 126.65669 * 0.03384 * 10 9 8 35 35 H 1.09002 * 109.58751 * 173.39743 * 14 5 4 36 36 H 1.08996 * 109.58750 * 293.67928 * 14 5 4 37 37 H 1.08997 * 109.50046 * 65.38734 * 15 14 5 38 38 H 1.09003 * 109.49733 * 185.48713 * 15 14 5 39 39 H 0.97007 * 119.99658 * 24.99911 * 18 16 2 40 40 H 0.97006 * 119.99397 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3855 2.1781 7 8 3.7730 0.1057 3.1637 8 6 5.7806 -0.5001 2.0809 9 7 6.3919 0.0488 3.2937 10 6 7.2529 -0.5844 4.1119 11 7 7.5514 0.2594 5.0696 12 7 6.9070 1.3534 4.8512 13 7 6.2095 1.2315 3.7761 14 6 4.1053 -1.4267 -0.0306 15 6 3.5713 -0.6980 -1.2679 16 6 2.0409 -0.7231 -1.2483 17 1 1.6967 -1.7573 -1.2352 18 7 1.5266 -0.0530 -2.4453 19 6 1.3965 -0.7493 -3.6171 20 1 1.6734 -1.7923 -3.6592 21 6 0.9097 -0.1143 -4.7515 22 7 0.5727 1.1571 -4.7004 23 14 0.7328 -1.0639 -6.3503 24 1 -0.1985 -2.2029 -6.1491 25 1 0.1950 -0.1652 -7.4030 26 1 2.0611 -1.5788 -6.7697 27 1 -0.3634 0.5126 0.8906 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3633 -1.0277 -0.0015 30 1 1.6052 -1.7215 1.2981 31 1 1.7638 -0.1579 2.1389 32 1 6.0588 -1.5488 1.9759 33 1 6.1321 0.0577 1.2128 34 1 7.6255 -1.5919 4.0008 35 1 5.1896 -1.3246 0.0139 36 1 3.8397 -2.4824 -0.0852 37 1 3.9164 0.3358 -1.2585 38 1 3.9340 -1.1951 -2.1676 39 1 1.2782 0.8839 -2.4076 40 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035906339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:05 Heat of formation + Delta-G solvation = 78.187446 kcal Electronic energy + Delta-G solvation = -23798.278829 eV Core-core repulsion = 20264.528349 eV Total energy + Delta-G solvation = -3533.750480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.14923 -41.40444 -39.16260 -36.46323 -36.22666 -34.52023 -33.43583 -33.04642 -31.13219 -30.36127 -27.51953 -26.62151 -24.87879 -24.64247 -23.99885 -23.07385 -21.39713 -20.42432 -19.06968 -18.88539 -18.41232 -17.58215 -17.05956 -16.73658 -16.61090 -16.44494 -15.68942 -15.46491 -15.04880 -14.83923 -14.65924 -14.24500 -14.01325 -13.64337 -13.50432 -13.15122 -13.11313 -12.93652 -12.80727 -12.74501 -12.48856 -12.19679 -12.18213 -12.11883 -12.01696 -11.84585 -11.65805 -11.44599 -11.14091 -10.98194 -10.78488 -9.74595 -8.94413 -7.89416 -5.16803 0.29371 0.97397 1.27549 1.36445 1.50332 1.52086 1.58041 1.90717 2.59673 3.07852 3.44289 3.45783 3.52080 3.79601 3.82645 3.95733 4.00707 4.03808 4.12012 4.30296 4.39801 4.42535 4.51473 4.66826 4.72953 4.78235 4.80283 4.86028 4.99477 5.01205 5.14193 5.24734 5.32599 5.41461 5.51582 5.57394 5.66464 6.26695 6.32123 6.93939 7.38415 7.59852 8.15881 8.37438 9.34136 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.003163 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.461069 B = 8849.308078 C = 9207.290559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 H 0.048 0.952 4 C 0.129 3.871 5 N -0.597 5.597 6 C 0.498 3.502 7 O -0.574 6.574 8 C 0.093 3.907 9 N -0.299 5.299 10 C 0.186 3.814 11 N -0.347 5.347 12 N -0.120 5.120 13 N -0.101 5.101 14 C 0.109 3.891 15 C -0.148 4.148 16 C 0.177 3.823 17 H 0.052 0.948 18 N -0.734 5.734 19 C -0.227 4.227 20 H 0.082 0.918 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.305 1.305 26 H -0.275 1.275 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.209 0.791 33 H 0.161 0.839 34 H 0.299 0.701 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.368 0.632 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -12.334 11.717 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 H 0.067 0.933 4 C 0.006 3.994 5 N -0.329 5.329 6 C 0.285 3.715 7 O -0.453 6.453 8 C -0.030 4.030 9 N -0.101 5.101 10 C -0.112 4.112 11 N -0.195 5.195 12 N -0.114 5.114 13 N -0.088 5.088 14 C -0.013 4.013 15 C -0.189 4.189 16 C 0.069 3.931 17 H 0.070 0.930 18 N -0.373 5.373 19 C -0.359 4.359 20 H 0.100 0.900 21 C -0.271 4.271 22 N -0.625 5.625 23 Si 0.797 3.203 24 H -0.206 1.206 25 H -0.232 1.232 26 H -0.201 1.201 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.178 0.822 34 H 0.314 0.686 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.200 0.800 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.489 -11.001 12.782 20.985 hybrid contribution -0.866 -0.149 -1.817 2.019 sum 11.623 -11.150 10.965 19.484 Atomic orbital electron populations 1.21583 0.94419 1.02040 1.00927 1.21613 0.96405 0.99070 0.95006 0.93318 1.21567 0.79071 1.01449 0.97289 1.48157 1.06799 1.59658 1.18265 1.20814 0.89934 0.77880 0.82842 1.90825 1.75754 1.45635 1.33051 1.22632 0.89459 1.06763 0.84138 1.48438 1.30756 1.09153 1.21743 1.28837 0.92073 1.03758 0.86482 1.74868 1.22043 0.99091 1.23488 1.78645 1.06426 1.17790 1.08538 1.78975 1.18624 1.03247 1.07967 1.22142 0.99669 0.98145 0.81313 1.22514 0.97780 1.00379 0.98179 1.20483 0.92373 0.95301 0.84982 0.93049 1.42628 1.76988 1.10833 1.06838 1.19575 1.33530 0.94491 0.88331 0.90044 1.25497 1.03369 0.96852 1.01379 1.69823 1.52151 1.11233 1.29258 0.85303 0.77986 0.77277 0.79752 1.20598 1.23167 1.20133 0.92244 0.94276 0.92071 0.89212 0.90621 0.77401 0.82155 0.68626 0.85657 0.88172 0.93645 0.90836 0.80026 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.02 71.98 0.65 -3.38 16 2 C -0.10 -2.94 2.46 -10.71 -0.03 -2.97 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.13 2.97 5.72 86.36 0.49 3.47 16 5 N -0.60 -10.72 2.97 -818.91 -2.44 -13.16 16 6 C 0.50 9.59 7.72 87.65 0.68 10.27 16 7 O -0.57 -17.72 15.12 -3.04 -0.05 -17.77 16 8 C 0.09 0.73 5.31 85.63 0.45 1.19 16 9 N -0.30 -4.99 3.19 -355.57 -1.13 -6.13 16 10 C 0.19 2.31 12.79 180.27 2.31 4.61 16 11 N -0.35 -8.32 12.36 -60.30 -0.75 -9.06 16 12 N -0.12 -3.68 13.43 37.01 0.50 -3.18 16 13 N -0.10 -2.86 12.30 37.02 0.46 -2.41 16 14 C 0.11 1.36 6.34 86.36 0.55 1.90 16 15 C -0.15 -3.64 5.67 30.68 0.17 -3.47 16 16 C 0.18 5.70 2.19 45.03 0.10 5.79 16 17 H 0.05 1.64 8.08 -2.38 -0.02 1.62 16 18 N -0.73 -33.16 4.41 -322.77 -1.42 -34.58 16 19 C -0.23 -11.43 9.93 84.03 0.83 -10.60 16 20 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 22 N -0.97 -57.75 13.06 21.65 0.28 -57.47 16 23 Si 0.97 43.73 29.55 68.60 2.03 45.76 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.47 7.36 -2.38 -0.02 1.45 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.02 7.00 -2.39 -0.02 2.00 16 32 H 0.21 -1.15 7.88 -2.38 -0.02 -1.17 16 33 H 0.16 0.62 7.69 -2.38 -0.02 0.60 16 34 H 0.30 -0.90 8.06 -2.91 -0.02 -0.92 16 35 H 0.13 0.36 5.93 -2.39 -0.01 0.34 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.37 18.84 7.50 -92.70 -0.70 18.14 16 40 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -85.46 333.00 4.52 -80.94 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.37 Total: 14.05 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.67 Total: 3.00 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -4.50 Total: -125.98 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.05 Total: -17.77 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -85.46 4.52 -80.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035906339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.130 kcal (2) G-P(sol) polarization free energy of solvation -85.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds