Wall clock time and date at job start Tue Mar 31 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47385 * 239.99792 * 3 2 1 5 5 H 1.48508 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47139 * 119.99431 * 3 2 1 7 7 C 1.38809 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64396 * 0.04409 * 9 7 2 11 11 C 1.54910 * 104.83109 * 204.09125 * 10 9 7 12 12 H 1.08995 * 111.00710 * 81.06603 * 11 10 9 13 13 O 1.42898 * 111.00607 * 204.91989 * 11 10 9 14 14 C 1.55158 * 101.58122 * 322.99328 * 11 10 9 15 15 H 1.09005 * 110.86918 * 277.06831 * 14 11 10 16 16 N 1.46492 * 110.72253 * 153.86583 * 14 11 10 17 17 C 1.34776 * 120.00471 * 160.02229 * 16 14 11 18 18 O 1.21286 * 119.99615 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00489 * 179.97438 * 17 16 14 20 20 C 1.53005 * 109.47342 * 180.02562 * 19 17 16 21 21 H 1.08995 * 109.63489 * 55.41917 * 20 19 17 22 22 C 1.53024 * 109.64030 * 295.00087 * 20 19 17 23 23 C 1.50070 * 110.03521 * 190.73557 * 22 20 19 24 24 C 1.29172 * 124.28199 * 17.04512 * 23 22 20 25 25 C 1.50070 * 123.99416 * 359.61667 * 24 23 22 26 26 C 1.53019 * 110.14796 * 17.08522 * 25 24 23 27 27 C 1.47015 * 125.65158 * 179.97438 * 9 7 2 28 28 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36864 * 322.93160 * 10 9 7 30 30 H 1.09007 * 110.36807 * 85.14524 * 10 9 7 31 31 H 0.96706 * 113.99946 * 292.19701 * 13 11 10 32 32 H 0.97005 * 120.00123 * 340.02665 * 16 14 11 33 33 H 1.09004 * 109.47007 * 60.00093 * 19 17 16 34 34 H 1.09000 * 109.47045 * 300.00130 * 19 17 16 35 35 H 1.09002 * 109.35972 * 310.87421 * 22 20 19 36 36 H 1.08998 * 109.35954 * 70.60185 * 22 20 19 37 37 H 1.08001 * 117.96524 * 197.04376 * 23 22 20 38 38 H 1.08003 * 118.04671 * 179.59455 * 24 23 22 39 39 H 1.09002 * 109.35816 * 256.88395 * 25 24 23 40 40 H 1.08994 * 109.24789 * 137.22480 * 25 24 23 41 41 H 1.08997 * 109.64626 * 190.88377 * 26 25 24 42 42 H 1.09000 * 109.64655 * 70.24857 * 26 25 24 43 43 H 1.09005 * 109.88133 * 59.56046 * 27 9 7 44 44 H 1.08997 * 110.01299 * 298.47289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0013 11 6 -0.4018 -3.9319 0.6140 12 1 -0.3524 -3.8972 1.7023 13 8 -1.6567 -4.4572 0.1768 14 6 0.7784 -4.7524 0.0297 15 1 0.5482 -5.1009 -0.9771 16 7 1.1083 -5.8806 0.9039 17 6 1.8005 -6.9299 0.4179 18 8 2.1499 -6.9403 -0.7435 19 6 2.1404 -8.0903 1.3173 20 6 2.9237 -9.1383 0.5240 21 1 3.8016 -8.6756 0.0733 22 6 2.0320 -9.7259 -0.5721 23 6 2.6921 -10.9273 -1.1828 24 6 3.6698 -11.5745 -0.6407 25 6 4.2899 -11.2094 0.6762 26 6 3.3610 -10.2758 1.4554 27 6 1.9318 -3.7274 0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5994 -1.7584 0.6163 30 1 -0.5273 -2.4855 -1.0171 31 1 -2.4241 -3.9767 0.5166 32 1 0.8285 -5.8726 1.8327 33 1 1.2215 -8.5352 1.6992 34 1 2.7475 -7.7380 2.1512 35 1 1.0751 -10.0196 -0.1406 36 1 1.8650 -8.9743 -1.3436 37 1 2.3271 -11.2750 -2.1379 38 1 4.0654 -12.4309 -1.1665 39 1 5.2417 -10.7079 0.5007 40 1 4.4608 -12.1160 1.2566 41 1 3.8917 -9.8632 2.3134 42 1 2.4851 -10.8293 1.7940 43 1 2.5584 -3.8506 0.8851 44 1 2.5297 -3.8664 -0.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077517543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:30 Heat of formation + Delta-G solvation = -56.425472 kcal Electronic energy + Delta-G solvation = -23913.100674 eV Core-core repulsion = 20444.760532 eV Total energy + Delta-G solvation = -3468.340142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02358 -38.58629 -37.54902 -35.08664 -34.00301 -32.89370 -31.68301 -30.84912 -28.71943 -27.58569 -26.49918 -24.38301 -23.32112 -21.68583 -20.72205 -20.17472 -19.81234 -18.07553 -17.24107 -17.01407 -16.49022 -16.13153 -15.58316 -15.15892 -14.78703 -14.36363 -14.16002 -13.91703 -13.51944 -13.36621 -13.01822 -12.81280 -12.73176 -12.44936 -12.30721 -12.13580 -11.95819 -11.65691 -11.47869 -11.24977 -11.00350 -10.82974 -10.79541 -10.66226 -10.24578 -10.22317 -9.92903 -9.73785 -9.64557 -9.23654 -9.05440 -8.72826 -8.71534 -6.93060 -5.73187 -3.15632 2.23252 2.86694 3.35852 3.38703 3.42003 3.43805 4.39194 4.51938 4.57874 4.60893 4.69537 4.96299 5.04952 5.17082 5.24539 5.29308 5.36752 5.40765 5.48484 5.55701 5.61184 5.62395 5.65148 5.71459 5.73323 5.84184 5.87265 6.06049 6.08931 6.19892 6.22182 6.33752 6.52090 6.57868 6.68268 6.89549 6.95423 7.30495 7.51386 7.68127 7.77386 8.08330 8.24486 8.48164 9.12940 9.73451 10.36010 11.31033 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003052 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.163968 B = 9173.389570 C = 9711.808462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.142 3.858 15 H 0.098 0.902 16 N -0.717 5.717 17 C 0.511 3.489 18 O -0.537 6.537 19 C -0.137 4.137 20 C -0.071 4.071 21 H 0.081 0.919 22 C -0.094 4.094 23 C -0.143 4.143 24 C -0.170 4.170 25 C -0.089 4.089 26 C -0.116 4.116 27 C 0.131 3.869 28 H 0.254 0.746 29 H 0.112 0.888 30 H 0.025 0.975 31 H 0.377 0.623 32 H 0.397 0.603 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -19.712 5.756 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.007 3.993 12 H 0.079 0.921 13 O -0.371 6.371 14 C 0.038 3.962 15 H 0.116 0.884 16 N -0.368 5.368 17 C 0.297 3.703 18 O -0.414 6.414 19 C -0.177 4.177 20 C -0.090 4.090 21 H 0.099 0.901 22 C -0.131 4.131 23 C -0.161 4.161 24 C -0.188 4.188 25 C -0.126 4.126 26 C -0.153 4.153 27 C 0.004 3.996 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.043 0.957 31 H 0.224 0.776 32 H 0.231 0.769 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.462 -19.918 4.589 20.587 hybrid contribution -0.031 1.219 0.611 1.364 sum 2.431 -18.699 5.200 19.560 Atomic orbital electron populations 1.69728 1.04945 1.25086 1.57601 1.24801 0.95783 0.97829 1.02192 0.86094 0.78387 0.82694 0.77983 1.21092 1.21506 1.21089 1.19067 0.90597 0.82171 1.43292 0.90263 1.44285 1.01489 0.99811 1.87214 1.22542 0.85553 0.91987 0.99551 1.23631 0.82626 0.96094 0.96966 0.92086 1.86413 1.15578 1.58749 1.76343 1.21975 0.94004 0.85274 0.94990 0.88390 1.46043 1.56945 1.19508 1.14292 1.20644 0.77601 0.83338 0.88704 1.90674 1.52818 1.79937 1.18013 1.21763 1.02235 0.94764 0.98913 1.20948 0.98859 0.93907 0.95239 0.90058 1.20667 0.97606 0.95970 0.98849 1.22051 0.97653 0.96912 0.99446 1.21919 0.98796 1.00349 0.97714 1.20413 0.98713 0.99210 0.94224 1.21675 0.99486 0.96428 0.97743 1.21618 0.93753 0.85323 0.98955 0.93543 0.87010 0.95686 0.77608 0.76900 0.89047 0.88887 0.91451 0.88778 0.88329 0.88386 0.91019 0.91361 0.91599 0.91750 0.95307 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.37 10.09 55.49 0.56 -25.81 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -15.41 3.39 -170.08 -0.58 -15.98 16 10 C 0.13 3.08 5.62 -2.53 -0.01 3.07 16 11 C 0.07 1.25 4.04 -24.58 -0.10 1.15 16 12 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 13 O -0.57 -9.62 13.47 -35.23 -0.47 -10.10 16 14 C 0.14 2.69 2.97 -66.10 -0.20 2.49 16 15 H 0.10 2.07 7.69 -51.93 -0.40 1.67 16 16 N -0.72 -10.60 5.13 -52.04 -0.27 -10.87 16 17 C 0.51 7.49 7.58 -10.99 -0.08 7.40 16 18 O -0.54 -9.94 13.76 5.55 0.08 -9.86 16 19 C -0.14 -1.38 5.19 -27.88 -0.14 -1.53 16 20 C -0.07 -0.75 1.87 -90.40 -0.17 -0.92 16 21 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 22 C -0.09 -1.09 5.04 -28.18 -0.14 -1.23 16 23 C -0.14 -1.52 9.78 -35.83 -0.35 -1.87 16 24 C -0.17 -1.62 9.80 -35.83 -0.35 -1.97 16 25 C -0.09 -0.74 6.11 -28.18 -0.17 -0.92 16 26 C -0.12 -0.97 5.32 -26.52 -0.14 -1.11 16 27 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.38 4.85 9.12 45.56 0.42 5.26 16 32 H 0.40 4.71 8.52 -40.82 -0.35 4.36 16 33 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.09 1.34 6.22 -51.93 -0.32 1.02 16 37 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.10 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -32.32 349.63 -8.97 -41.29 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.40 Total: 8.58 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.14 Total: 0.65 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.28 Total: -52.67 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.40 Total: -19.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.32 -8.97 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077517543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.135 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds