Wall clock time and date at job start Tue Mar 31 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47385 * 239.99792 * 3 2 1 5 5 H 1.48508 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47139 * 119.99431 * 3 2 1 7 7 C 1.38809 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00343 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64396 * 0.04409 * 9 7 2 11 11 C 1.54910 * 104.83109 * 204.09125 * 10 9 7 12 12 H 1.08995 * 111.00710 * 81.06603 * 11 10 9 13 13 O 1.42898 * 111.00607 * 204.91989 * 11 10 9 14 14 C 1.55158 * 101.58122 * 322.99328 * 11 10 9 15 15 H 1.09005 * 110.86918 * 277.06831 * 14 11 10 16 16 N 1.46492 * 110.72253 * 153.86583 * 14 11 10 17 17 C 1.34776 * 120.00471 * 160.02229 * 16 14 11 18 18 O 1.21286 * 119.99615 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00489 * 179.97438 * 17 16 14 20 20 C 1.53005 * 109.47342 * 180.02562 * 19 17 16 21 21 H 1.08995 * 109.63489 * 55.41917 * 20 19 17 22 22 C 1.53024 * 109.64030 * 295.00087 * 20 19 17 23 23 C 1.50070 * 110.03521 * 190.73557 * 22 20 19 24 24 C 1.29172 * 124.28199 * 17.04512 * 23 22 20 25 25 C 1.50070 * 123.99416 * 359.61667 * 24 23 22 26 26 C 1.53019 * 110.14796 * 17.08522 * 25 24 23 27 27 C 1.47015 * 125.65158 * 179.97438 * 9 7 2 28 28 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36864 * 322.93160 * 10 9 7 30 30 H 1.09007 * 110.36807 * 85.14524 * 10 9 7 31 31 H 0.96706 * 113.99946 * 292.19701 * 13 11 10 32 32 H 0.97005 * 120.00123 * 340.02665 * 16 14 11 33 33 H 1.09004 * 109.47007 * 60.00093 * 19 17 16 34 34 H 1.09000 * 109.47045 * 300.00130 * 19 17 16 35 35 H 1.09002 * 109.35972 * 310.87421 * 22 20 19 36 36 H 1.08998 * 109.35954 * 70.60185 * 22 20 19 37 37 H 1.08001 * 117.96524 * 197.04376 * 23 22 20 38 38 H 1.08003 * 118.04671 * 179.59455 * 24 23 22 39 39 H 1.09002 * 109.35816 * 256.88395 * 25 24 23 40 40 H 1.08994 * 109.24789 * 137.22480 * 25 24 23 41 41 H 1.08997 * 109.64626 * 190.88377 * 26 25 24 42 42 H 1.09000 * 109.64655 * 70.24857 * 26 25 24 43 43 H 1.09005 * 109.88133 * 59.56046 * 27 9 7 44 44 H 1.08997 * 110.01299 * 298.47289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0013 11 6 -0.4018 -3.9319 0.6140 12 1 -0.3524 -3.8972 1.7023 13 8 -1.6567 -4.4572 0.1768 14 6 0.7784 -4.7524 0.0297 15 1 0.5482 -5.1009 -0.9771 16 7 1.1083 -5.8806 0.9039 17 6 1.8005 -6.9299 0.4179 18 8 2.1499 -6.9403 -0.7435 19 6 2.1404 -8.0903 1.3173 20 6 2.9237 -9.1383 0.5240 21 1 3.8016 -8.6756 0.0733 22 6 2.0320 -9.7259 -0.5721 23 6 2.6921 -10.9273 -1.1828 24 6 3.6698 -11.5745 -0.6407 25 6 4.2899 -11.2094 0.6762 26 6 3.3610 -10.2758 1.4554 27 6 1.9318 -3.7274 0.0017 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5994 -1.7584 0.6163 30 1 -0.5273 -2.4855 -1.0171 31 1 -2.4241 -3.9767 0.5166 32 1 0.8285 -5.8726 1.8327 33 1 1.2215 -8.5352 1.6992 34 1 2.7475 -7.7380 2.1512 35 1 1.0751 -10.0196 -0.1406 36 1 1.8650 -8.9743 -1.3436 37 1 2.3271 -11.2750 -2.1379 38 1 4.0654 -12.4309 -1.1665 39 1 5.2417 -10.7079 0.5007 40 1 4.4608 -12.1160 1.2566 41 1 3.8917 -9.8632 2.3134 42 1 2.4851 -10.8293 1.7940 43 1 2.5584 -3.8506 0.8851 44 1 2.5297 -3.8664 -0.8989 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077517543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:30 Heat of formation + Delta-G solvation = -79.803751 kcal Electronic energy + Delta-G solvation = -23914.114432 eV Core-core repulsion = 20444.760532 eV Total energy + Delta-G solvation = -3469.353900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21691 -39.80985 -38.78886 -36.69807 -35.52703 -33.88894 -33.43526 -31.57202 -30.38592 -29.08107 -27.86470 -26.21177 -24.09752 -22.79588 -22.36310 -21.63659 -21.07024 -19.10874 -18.86128 -18.44807 -17.77349 -17.31577 -16.89792 -16.48051 -16.22438 -15.70232 -15.45820 -15.10163 -14.93591 -14.74403 -14.31879 -13.98949 -13.84172 -13.81310 -13.49154 -13.22104 -13.19719 -13.13554 -12.88404 -12.80299 -12.70656 -12.39254 -12.10985 -11.93720 -11.61309 -11.48136 -11.42952 -11.09301 -10.96990 -10.78583 -10.60597 -10.11688 -9.81605 -8.99089 -7.83360 -5.30005 1.45776 1.46436 1.49802 1.56098 1.71405 2.15351 2.46680 3.07626 3.27959 3.62223 3.68907 3.76042 3.84029 3.94305 4.04429 4.15652 4.20622 4.30874 4.41662 4.46535 4.51985 4.60692 4.61820 4.77118 4.80255 4.83602 4.85825 4.93068 5.01584 5.08693 5.14985 5.27503 5.35922 5.41805 5.42248 5.51274 5.55697 5.66349 5.82222 6.12528 6.19741 6.61938 6.85993 7.03337 7.34330 7.67465 8.29816 9.18180 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.003052 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.163968 B = 9173.389570 C = 9711.808462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.133 3.867 11 C 0.093 3.907 12 H 0.090 0.910 13 O -0.568 6.568 14 C 0.157 3.843 15 H 0.070 0.930 16 N -0.706 5.706 17 C 0.505 3.495 18 O -0.581 6.581 19 C -0.125 4.125 20 C -0.071 4.071 21 H 0.055 0.945 22 C -0.092 4.092 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.094 4.094 26 C -0.109 4.109 27 C 0.132 3.868 28 H 0.251 0.749 29 H 0.091 0.909 30 H -0.011 1.011 31 H 0.397 0.603 32 H 0.416 0.584 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -21.222 8.290 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.812 3.188 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.347 5.347 10 C 0.007 3.993 11 C 0.032 3.968 12 H 0.107 0.893 13 O -0.376 6.376 14 C 0.050 3.950 15 H 0.089 0.911 16 N -0.359 5.359 17 C 0.294 3.706 18 O -0.461 6.461 19 C -0.165 4.165 20 C -0.090 4.090 21 H 0.073 0.927 22 C -0.129 4.129 23 C -0.185 4.185 24 C -0.180 4.180 25 C -0.130 4.130 26 C -0.146 4.146 27 C 0.006 3.994 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.007 0.993 31 H 0.247 0.753 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 2.925 -21.459 7.165 22.812 hybrid contribution -0.171 1.651 -0.261 1.680 sum 2.754 -19.808 6.903 21.156 Atomic orbital electron populations 1.69955 1.06121 1.25506 1.57973 1.25645 0.96746 1.00960 1.02006 0.85073 0.77163 0.78383 0.78203 1.20894 1.21532 1.19820 1.19416 0.91056 0.83471 1.43642 0.90213 1.44548 1.02440 1.00600 1.87110 1.22378 0.84584 0.94905 0.97463 1.23235 0.83283 0.92444 0.97804 0.89277 1.86387 1.15726 1.58695 1.76765 1.21459 0.92958 0.85801 0.94755 0.91146 1.45865 1.57030 1.18272 1.14688 1.21581 0.76315 0.83971 0.88726 1.90677 1.54310 1.80765 1.20339 1.21814 1.03940 0.92424 0.98275 1.20928 0.97695 0.94824 0.95515 0.92679 1.20580 0.98526 0.95417 0.98399 1.22082 0.99003 0.97433 1.00031 1.22193 0.97596 1.00007 0.98205 1.20518 0.98561 1.00195 0.93769 1.21656 1.00061 0.95394 0.97535 1.21668 0.94787 0.84785 0.98200 0.93926 0.89109 0.99346 0.75262 0.74651 0.86136 0.85999 0.90633 0.92406 0.88496 0.87222 0.91016 0.89299 0.89711 0.90656 0.94134 0.97226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.01 10.09 21.65 0.22 -54.79 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 3 Si 0.98 45.15 29.55 68.60 2.03 47.17 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.25 -14.00 10.27 84.03 0.86 -13.14 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -32.52 3.39 -692.00 -2.35 -34.87 16 10 C 0.13 6.47 5.62 86.86 0.49 6.96 16 11 C 0.09 3.38 4.04 31.99 0.13 3.51 16 12 H 0.09 2.81 8.00 -2.39 -0.02 2.79 16 13 O -0.57 -18.53 13.47 -148.98 -2.01 -20.53 16 14 C 0.16 5.92 2.97 46.18 0.14 6.05 16 15 H 0.07 3.08 7.69 -2.38 -0.02 3.06 16 16 N -0.71 -19.68 5.13 -436.93 -2.24 -21.92 16 17 C 0.51 14.28 7.58 87.66 0.66 14.94 16 18 O -0.58 -22.08 13.76 -3.05 -0.04 -22.12 16 19 C -0.13 -2.16 5.19 29.85 0.15 -2.01 16 20 C -0.07 -1.39 1.87 -10.65 -0.02 -1.41 16 21 H 0.05 1.38 7.96 -2.39 -0.02 1.36 16 22 C -0.09 -2.11 5.04 29.66 0.15 -1.96 16 23 C -0.17 -3.51 9.78 27.30 0.27 -3.24 16 24 C -0.16 -2.84 9.80 27.30 0.27 -2.58 16 25 C -0.09 -1.32 6.11 29.66 0.18 -1.14 16 26 C -0.11 -1.47 5.32 30.73 0.16 -1.30 16 27 C 0.13 5.90 6.99 86.73 0.61 6.51 16 28 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.09 4.83 5.87 -2.39 -0.01 4.81 16 30 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 31 H 0.40 9.48 9.12 -74.05 -0.68 8.80 16 32 H 0.42 8.48 8.52 -92.70 -0.79 7.69 16 33 H 0.12 1.47 8.11 -2.38 -0.02 1.45 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.06 1.74 6.22 -2.39 -0.01 1.73 16 37 H 0.10 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.04 1.71 8.03 -2.38 -0.02 1.69 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -73.23 349.63 -0.34 -73.57 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.46 Total: 25.26 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 4.52 Total: 8.24 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.37 Total: -111.59 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -2.05 Total: -42.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.23 -0.34 -73.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077517543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.234 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds