Wall clock time and date at job start Tue Mar 31 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48502 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47192 * 299.99649 * 3 2 1 6 6 H 1.48498 * 109.47180 * 60.00127 * 3 2 1 7 7 C 1.37880 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47151 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.48630 * 111.00158 * 52.55987 * 11 10 9 13 13 C 1.55156 * 103.36044 * 159.15130 * 12 11 10 14 14 C 1.53600 * 102.66470 * 323.42102 * 13 12 11 15 15 C 1.53618 * 110.85855 * 142.27413 * 14 13 12 16 16 C 1.54702 * 101.51518 * 96.89077 * 15 14 13 17 17 N 1.46885 * 105.51651 * 24.53028 * 16 15 14 18 18 C 1.46504 * 124.36788 * 163.21103 * 17 16 15 19 19 C 1.54035 * 113.81531 * 216.19070 * 18 17 16 20 20 O 1.44183 * 85.51538 * 223.19788 * 19 18 17 21 21 C 1.44177 * 93.33884 * 24.19338 * 20 19 18 22 22 C 1.34745 * 111.25913 * 343.18003 * 17 16 15 23 23 O 1.21279 * 125.13101 * 181.01964 * 22 17 16 24 24 C 1.48192 * 110.99888 * 170.00049 * 11 10 9 25 25 H 0.97001 * 120.00687 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47342 * 59.99862 * 9 7 2 27 27 H 1.09003 * 109.47314 * 299.99335 * 9 7 2 28 28 H 1.08999 * 109.46837 * 59.99888 * 10 9 7 29 29 H 1.09003 * 109.46743 * 300.00020 * 10 9 7 30 30 H 1.09002 * 110.64295 * 40.67911 * 12 11 10 31 31 H 1.09006 * 110.78019 * 277.68554 * 12 11 10 32 32 H 1.09000 * 110.77373 * 205.12568 * 13 12 11 33 33 H 1.09002 * 110.77244 * 81.71157 * 13 12 11 34 34 H 1.09006 * 111.01831 * 214.94951 * 15 14 13 35 35 H 1.08999 * 111.01548 * 338.82651 * 15 14 13 36 36 H 1.08992 * 110.23894 * 143.54346 * 16 15 14 37 37 H 1.08995 * 110.23642 * 265.52510 * 16 15 14 38 38 H 1.09006 * 112.99920 * 348.17720 * 18 17 16 39 39 H 1.08997 * 113.86566 * 337.34654 * 19 18 17 40 40 H 1.08998 * 113.86552 * 109.05051 * 19 18 17 41 41 H 1.08997 * 113.86145 * 221.65648 * 21 20 19 42 42 H 1.09001 * 113.98295 * 89.97183 * 21 20 19 43 43 H 1.08995 * 110.01817 * 95.03248 * 24 11 10 44 44 H 1.09005 * 110.01838 * 333.63726 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.5137 -4.9741 -1.1002 13 6 0.2503 -6.4912 -1.2906 14 6 1.6366 -7.1067 -1.0485 15 6 1.5194 -8.4372 -0.2895 16 6 1.5778 -9.4601 -1.4486 17 7 2.2879 -8.7784 -2.5389 18 6 2.8816 -9.4594 -3.6922 19 6 4.2006 -8.8278 -4.1761 20 8 3.6681 -9.0080 -5.5038 21 6 2.3008 -9.0104 -5.0463 22 6 2.3220 -7.4459 -2.3417 23 8 2.8291 -6.6417 -3.0947 24 6 2.4253 -6.0754 -0.2391 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.9280 -4.5388 -2.0097 31 1 -0.4022 -4.4583 -0.8115 32 1 -0.0936 -6.6997 -2.3037 33 1 -0.4676 -6.8543 -0.5551 34 1 2.3577 -8.5726 0.3940 35 1 0.5698 -8.5019 0.2416 36 1 2.1267 -10.3495 -1.1393 37 1 0.5702 -9.7291 -1.7652 38 1 2.9282 -10.5416 -3.5702 39 1 4.3216 -7.7838 -3.8874 40 1 5.0822 -9.4343 -3.9685 41 1 1.6757 -9.7616 -5.5289 42 1 1.8398 -8.0230 -5.0229 43 1 2.7399 -6.5078 0.7107 44 1 3.2958 -5.7434 -0.8049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:01 Heat of formation + Delta-G solvation = -31.079416 kcal Electronic energy + Delta-G solvation = -24557.446312 eV Core-core repulsion = 21090.205257 eV Total energy + Delta-G solvation = -3467.241055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69390 -40.06435 -37.67397 -36.53800 -33.85520 -32.48566 -30.62727 -29.03533 -28.28999 -27.84426 -26.83509 -24.80179 -23.35549 -22.28009 -22.00136 -20.73829 -19.76006 -18.72664 -17.35673 -16.75728 -16.42572 -16.39512 -15.76170 -15.44250 -15.01019 -14.75683 -14.39812 -14.26999 -13.92310 -13.67589 -13.47801 -13.22609 -12.87080 -12.61100 -12.53178 -12.24837 -12.03564 -11.69232 -11.44326 -11.39582 -11.24877 -11.03163 -10.93648 -10.80240 -10.66124 -10.44779 -10.13494 -9.88066 -9.47364 -9.30579 -9.08023 -9.01654 -8.32273 -7.82340 -5.97037 -3.98856 2.33566 2.58819 3.33954 3.38458 3.41144 3.45813 3.90159 4.04873 4.18260 4.42415 4.46105 4.51984 4.60462 4.75962 4.88261 4.92303 5.03018 5.14854 5.17031 5.27507 5.39128 5.40162 5.50223 5.60956 5.62559 5.66772 5.72413 5.81657 5.84959 5.93666 6.00907 6.21098 6.29618 6.36716 6.47541 6.50383 6.78518 6.96190 7.43632 7.47362 7.76477 7.89685 7.97584 8.08136 8.46606 9.08028 9.64740 11.14472 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.003414 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.632213 B = 8199.374846 C = 8822.690963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.052 3.948 11 N -0.513 5.513 12 C 0.042 3.958 13 C -0.099 4.099 14 C -0.105 4.105 15 C -0.118 4.118 16 C 0.101 3.899 17 N -0.619 5.619 18 C 0.091 3.909 19 C 0.020 3.980 20 O -0.375 6.375 21 C 0.026 3.974 22 C 0.533 3.467 23 O -0.510 6.510 24 C 0.056 3.944 25 H 0.259 0.741 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -24.835 -3.366 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.075 4.075 11 N -0.237 5.237 12 C -0.086 4.086 13 C -0.137 4.137 14 C -0.109 4.109 15 C -0.155 4.155 16 C -0.022 4.022 17 N -0.355 5.355 18 C -0.013 4.013 19 C -0.057 4.057 20 O -0.293 6.293 21 C -0.052 4.052 22 C 0.321 3.679 23 O -0.385 6.385 24 C -0.073 4.073 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.928 -24.379 -3.585 24.716 hybrid contribution 0.786 0.912 -0.666 1.376 sum 2.714 -23.466 -4.251 24.002 Atomic orbital electron populations 1.69973 1.06013 1.26437 1.50920 1.24986 0.94835 0.99179 0.95317 0.86541 0.80144 0.83810 0.77543 1.19753 1.21040 1.20996 1.21230 0.93063 0.91026 1.50550 0.92716 1.19151 0.93995 0.90373 0.97746 1.22526 0.97162 0.88532 0.99255 1.65049 1.13174 1.03249 1.42231 1.23222 0.97633 0.93976 0.93800 1.22407 0.93177 0.96472 1.01668 1.21575 0.98333 0.97176 0.93827 1.22704 1.04553 0.91904 0.96388 1.22221 0.97078 0.96151 0.86750 1.48522 1.56333 1.07489 1.23193 1.24604 0.93585 0.98595 0.84509 1.24647 0.96308 1.03441 0.81325 1.89701 1.18577 1.94053 1.26953 1.24467 0.86391 1.02268 0.92044 1.20592 0.78407 0.81491 0.87434 1.90718 1.45148 1.52344 1.50248 1.22737 0.95081 0.91405 0.98086 0.93089 0.96375 0.95746 0.91897 0.95705 0.93268 0.89243 0.91459 0.89558 0.89637 0.88483 0.90359 0.90910 0.86065 0.87405 0.89043 0.88831 0.89462 0.90101 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.65 4.64 -27.88 -0.13 0.52 16 10 C 0.05 1.16 4.96 -3.82 -0.02 1.14 16 11 N -0.51 -9.45 5.41 -230.60 -1.25 -10.70 16 12 C 0.04 0.73 5.11 -1.72 -0.01 0.72 16 13 C -0.10 -1.26 6.22 -25.28 -0.16 -1.42 16 14 C -0.11 -1.28 0.77 -155.25 -0.12 -1.39 16 15 C -0.12 -0.91 6.19 -25.52 -0.16 -1.07 16 16 C 0.10 0.65 7.37 -2.94 -0.02 0.63 16 17 N -0.62 -5.97 3.17 -172.46 -0.55 -6.52 16 18 C 0.09 0.80 4.88 -66.85 -0.33 0.47 16 19 C 0.02 0.22 8.58 37.61 0.32 0.54 16 20 O -0.38 -4.73 12.45 -35.23 -0.44 -5.17 16 21 C 0.03 0.27 8.73 37.61 0.33 0.60 16 22 C 0.53 7.09 6.02 -11.22 -0.07 7.02 16 23 O -0.51 -8.85 14.22 5.56 0.08 -8.77 16 24 C 0.06 0.84 6.02 -3.11 -0.02 0.82 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.50 6.79 -51.93 -0.35 0.15 16 27 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.02 0.57 7.82 -51.93 -0.41 0.16 16 30 H 0.05 0.97 7.98 -51.93 -0.41 0.56 16 31 H 0.09 1.65 7.70 -51.93 -0.40 1.25 16 32 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.09 0.94 7.46 -51.93 -0.39 0.55 16 34 H 0.09 0.61 7.59 -51.93 -0.39 0.21 16 35 H 0.10 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 1.48 5.63 -51.93 -0.29 1.19 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 43 H 0.08 1.06 7.40 -51.93 -0.38 0.68 16 44 H 0.05 0.86 6.87 -51.93 -0.36 0.50 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -33.96 344.44 -9.10 -43.06 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -7.07 Total: -2.48 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.79 Total: -5.23 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -1.06 Total: -43.67 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.36 Total: -13.94 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.96 -9.10 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.978 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds