Wall clock time and date at job start Tue Mar 31 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48502 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47192 * 299.99649 * 3 2 1 6 6 H 1.48498 * 109.47180 * 60.00127 * 3 2 1 7 7 C 1.37880 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47151 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47133 * 179.97438 * 10 9 7 12 12 C 1.48630 * 111.00158 * 52.55987 * 11 10 9 13 13 C 1.55156 * 103.36044 * 159.15130 * 12 11 10 14 14 C 1.53600 * 102.66470 * 323.42102 * 13 12 11 15 15 C 1.53618 * 110.85855 * 142.27413 * 14 13 12 16 16 C 1.54702 * 101.51518 * 96.89077 * 15 14 13 17 17 N 1.46885 * 105.51651 * 24.53028 * 16 15 14 18 18 C 1.46504 * 124.36788 * 163.21103 * 17 16 15 19 19 C 1.54035 * 113.81531 * 216.19070 * 18 17 16 20 20 O 1.44183 * 85.51538 * 223.19788 * 19 18 17 21 21 C 1.44177 * 93.33884 * 24.19338 * 20 19 18 22 22 C 1.34745 * 111.25913 * 343.18003 * 17 16 15 23 23 O 1.21279 * 125.13101 * 181.01964 * 22 17 16 24 24 C 1.48192 * 110.99888 * 170.00049 * 11 10 9 25 25 H 0.97001 * 120.00687 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47342 * 59.99862 * 9 7 2 27 27 H 1.09003 * 109.47314 * 299.99335 * 9 7 2 28 28 H 1.08999 * 109.46837 * 59.99888 * 10 9 7 29 29 H 1.09003 * 109.46743 * 300.00020 * 10 9 7 30 30 H 1.09002 * 110.64295 * 40.67911 * 12 11 10 31 31 H 1.09006 * 110.78019 * 277.68554 * 12 11 10 32 32 H 1.09000 * 110.77373 * 205.12568 * 13 12 11 33 33 H 1.09002 * 110.77244 * 81.71157 * 13 12 11 34 34 H 1.09006 * 111.01831 * 214.94951 * 15 14 13 35 35 H 1.08999 * 111.01548 * 338.82651 * 15 14 13 36 36 H 1.08992 * 110.23894 * 143.54346 * 16 15 14 37 37 H 1.08995 * 110.23642 * 265.52510 * 16 15 14 38 38 H 1.09006 * 112.99920 * 348.17720 * 18 17 16 39 39 H 1.08997 * 113.86566 * 337.34654 * 19 18 17 40 40 H 1.08998 * 113.86552 * 109.05051 * 19 18 17 41 41 H 1.08997 * 113.86145 * 221.65648 * 21 20 19 42 42 H 1.09001 * 113.98295 * 89.97183 * 21 20 19 43 43 H 1.08995 * 110.01817 * 95.03248 * 24 11 10 44 44 H 1.09005 * 110.01838 * 333.63726 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.5137 -4.9741 -1.1002 13 6 0.2503 -6.4912 -1.2906 14 6 1.6366 -7.1067 -1.0485 15 6 1.5194 -8.4372 -0.2895 16 6 1.5778 -9.4601 -1.4486 17 7 2.2879 -8.7784 -2.5389 18 6 2.8816 -9.4594 -3.6922 19 6 4.2006 -8.8278 -4.1761 20 8 3.6681 -9.0080 -5.5038 21 6 2.3008 -9.0104 -5.0463 22 6 2.3220 -7.4459 -2.3417 23 8 2.8291 -6.6417 -3.0947 24 6 2.4253 -6.0754 -0.2391 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.9280 -4.5388 -2.0097 31 1 -0.4022 -4.4583 -0.8115 32 1 -0.0936 -6.6997 -2.3037 33 1 -0.4676 -6.8543 -0.5551 34 1 2.3577 -8.5726 0.3940 35 1 0.5698 -8.5019 0.2416 36 1 2.1267 -10.3495 -1.1393 37 1 0.5702 -9.7291 -1.7652 38 1 2.9282 -10.5416 -3.5702 39 1 4.3216 -7.7838 -3.8874 40 1 5.0822 -9.4343 -3.9685 41 1 1.6757 -9.7616 -5.5289 42 1 1.8398 -8.0230 -5.0229 43 1 2.7399 -6.5078 0.7107 44 1 3.2958 -5.7434 -0.8049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:01 Heat of formation + Delta-G solvation = -57.166076 kcal Electronic energy + Delta-G solvation = -24558.577514 eV Core-core repulsion = 21090.205257 eV Total energy + Delta-G solvation = -3468.372257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.59363 -41.01069 -38.96857 -37.52101 -35.63689 -34.09973 -31.95161 -30.53729 -29.45825 -28.71830 -27.64501 -26.58124 -24.55483 -23.69796 -22.96857 -21.69177 -21.44776 -19.69511 -18.60097 -18.20333 -17.54932 -17.27963 -16.87596 -16.70102 -16.40888 -16.14730 -15.73987 -15.55796 -14.97467 -14.78334 -14.74642 -14.30397 -14.10708 -14.00704 -13.75516 -13.41683 -13.26864 -12.97730 -12.87464 -12.60019 -12.52711 -12.43236 -12.39552 -12.18501 -12.02622 -11.84847 -11.63493 -11.32020 -11.22921 -11.05698 -10.59210 -10.42109 -9.78583 -9.42391 -8.23592 -6.35005 1.34039 1.37185 1.37950 1.51411 1.82917 2.37799 2.62026 3.00462 3.09441 3.16267 3.33495 3.37775 3.53695 3.83344 3.91962 4.00108 4.09218 4.27041 4.35009 4.38549 4.41503 4.44696 4.47146 4.55298 4.64004 4.68771 4.73902 4.79729 4.86928 4.92928 4.94626 4.97552 4.99396 5.06458 5.15687 5.20929 5.39589 5.56301 5.58471 5.73009 5.90246 5.99304 6.05187 6.25754 6.80492 7.04225 7.33836 8.88696 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.003414 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.632213 B = 8199.374846 C = 8822.690963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.036 3.964 10 C 0.069 3.931 11 N -0.514 5.514 12 C 0.036 3.964 13 C -0.084 4.084 14 C -0.105 4.105 15 C -0.109 4.109 16 C 0.099 3.901 17 N -0.610 5.610 18 C 0.106 3.894 19 C 0.010 3.990 20 O -0.400 6.400 21 C 0.020 3.980 22 C 0.522 3.478 23 O -0.566 6.566 24 C 0.055 3.945 25 H 0.265 0.735 26 H -0.007 1.007 27 H 0.000 1.000 28 H 0.068 0.932 29 H 0.006 0.994 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.169 0.831 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -28.005 -2.235 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.059 4.059 11 N -0.237 5.237 12 C -0.092 4.092 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.146 4.146 16 C -0.022 4.022 17 N -0.343 5.343 18 C 0.003 3.997 19 C -0.068 4.068 20 O -0.319 6.319 21 C -0.058 4.058 22 C 0.310 3.690 23 O -0.444 6.444 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.011 0.989 27 H 0.019 0.981 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.186 0.814 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.941 -27.610 -2.435 27.785 hybrid contribution 0.760 1.896 -1.057 2.300 sum 2.701 -25.714 -3.492 26.090 Atomic orbital electron populations 1.70096 1.07694 1.27809 1.51260 1.25947 0.95824 1.03256 0.94460 0.85377 0.78912 0.78617 0.78005 1.18894 1.20332 1.19754 1.21630 0.93393 0.92461 1.51204 0.92639 1.18944 0.94093 0.91871 0.95222 1.22158 0.95903 0.89263 0.98541 1.65006 1.13624 1.02559 1.42550 1.23187 0.96390 0.97760 0.91836 1.22368 0.94557 0.92266 1.03028 1.21562 0.96703 0.98816 0.93777 1.22777 1.06417 0.88669 0.96756 1.22567 0.98495 0.96332 0.84791 1.48597 1.55365 1.06373 1.24015 1.24672 0.91281 1.00427 0.83329 1.24649 0.98812 1.02133 0.81171 1.89672 1.19992 1.93940 1.28263 1.24554 0.85803 1.01643 0.93777 1.20872 0.78092 0.82587 0.87410 1.90702 1.47546 1.54219 1.51978 1.22842 0.93929 0.90921 0.99631 0.92621 0.98895 0.98143 0.91387 0.97532 0.96990 0.90957 0.90889 0.86466 0.88353 0.86205 0.86796 0.88649 0.81359 0.91166 0.86461 0.85612 0.92711 0.87380 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.55 -33.08 9.11 25.60 0.23 -32.84 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 2.03 4.64 29.85 0.14 2.17 16 10 C 0.07 3.25 4.96 86.31 0.43 3.67 16 11 N -0.51 -19.60 5.41 -883.50 -4.78 -24.38 16 12 C 0.04 1.35 5.11 86.71 0.44 1.80 16 13 C -0.08 -2.07 6.22 31.54 0.20 -1.87 16 14 C -0.10 -2.38 0.77 -52.66 -0.04 -2.42 16 15 C -0.11 -1.18 6.19 31.38 0.19 -0.99 16 16 C 0.10 0.73 7.37 86.89 0.64 1.37 16 17 N -0.61 -10.02 3.17 -829.00 -2.63 -12.65 16 18 C 0.11 1.56 4.88 45.69 0.22 1.79 16 19 C 0.01 0.20 8.58 72.27 0.62 0.82 16 20 O -0.40 -10.00 12.45 -148.98 -1.86 -11.86 16 21 C 0.02 0.39 8.73 72.27 0.63 1.02 16 22 C 0.52 13.75 6.02 87.52 0.53 14.28 16 23 O -0.57 -21.05 14.22 -3.03 -0.04 -21.09 16 24 C 0.06 1.65 6.02 86.05 0.52 2.17 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 26 H -0.01 -0.44 6.79 -2.39 -0.02 -0.46 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.01 0.32 7.82 -2.39 -0.02 0.30 16 30 H 0.01 0.52 7.98 -2.39 -0.02 0.50 16 31 H 0.07 2.87 7.70 -2.38 -0.02 2.85 16 32 H 0.07 1.73 7.85 -2.39 -0.02 1.71 16 33 H 0.12 2.18 7.46 -2.39 -0.02 2.17 16 34 H 0.10 0.89 7.59 -2.38 -0.02 0.87 16 35 H 0.12 0.85 7.45 -2.39 -0.02 0.84 16 36 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.17 0.99 8.14 -2.38 -0.02 0.98 16 39 H 0.07 2.07 5.63 -2.39 -0.01 2.06 16 40 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.41 7.42 -2.39 -0.02 1.39 16 43 H 0.11 2.63 7.40 -2.39 -0.02 2.61 16 44 H 0.02 0.82 6.87 -2.38 -0.02 0.80 16 Total: -1.00 -81.18 344.44 -0.80 -81.98 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.98 Total: 6.11 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.21 Total: -8.37 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -7.12 Total: -94.79 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.90 Total: -32.95 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -81.18 -0.80 -81.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.815 kcal (2) G-P(sol) polarization free energy of solvation -81.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds