Wall clock time and date at job start Tue Mar 31 2020 03:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48494 * 109.46771 * 270.00326 * 3 2 1 5 5 H 1.48498 * 109.47142 * 29.99952 * 3 2 1 6 6 H 1.48495 * 109.47077 * 150.00087 * 3 2 1 7 7 C 1.37872 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46921 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47035 * 185.13520 * 10 9 7 12 12 C 1.48007 * 110.99930 * 184.29213 * 11 10 9 13 13 C 1.54281 * 107.02838 * 145.59017 * 12 11 10 14 14 C 1.53311 * 104.80009 * 358.00497 * 13 12 11 15 15 C 1.53356 * 111.50569 * 218.99891 * 14 13 12 16 16 C 1.54759 * 101.43844 * 214.25950 * 15 14 13 17 17 N 1.46906 * 105.53331 * 24.29678 * 16 15 14 18 18 C 1.46501 * 124.37145 * 163.24694 * 17 16 15 19 19 C 1.54037 * 113.81337 * 216.18938 * 18 17 16 20 20 O 1.44172 * 85.51854 * 223.19654 * 19 18 17 21 21 C 1.44181 * 93.34254 * 24.19485 * 20 19 18 22 22 C 1.34831 * 111.24790 * 343.22859 * 17 16 15 23 23 O 1.21282 * 125.18569 * 181.15583 * 22 17 16 24 24 C 1.48778 * 110.99996 * 301.91576 * 11 10 9 25 25 H 0.97005 * 119.99622 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47610 * 60.00069 * 9 7 2 27 27 H 1.09004 * 109.46842 * 299.99468 * 9 7 2 28 28 H 1.09002 * 109.47129 * 65.13589 * 10 9 7 29 29 H 1.08998 * 109.47575 * 305.13162 * 10 9 7 30 30 H 1.08997 * 109.92360 * 26.24650 * 12 11 10 31 31 H 1.09007 * 109.92031 * 264.93325 * 12 11 10 32 32 H 1.09002 * 110.37608 * 239.17111 * 13 12 11 33 33 H 1.09003 * 110.37514 * 116.83177 * 13 12 11 34 34 H 1.09007 * 111.02850 * 332.29856 * 15 14 13 35 35 H 1.09003 * 111.03101 * 96.21272 * 15 14 13 36 36 H 1.09003 * 110.23621 * 143.32121 * 16 15 14 37 37 H 1.09004 * 110.22933 * 265.28554 * 16 15 14 38 38 H 1.08996 * 113.00176 * 348.17547 * 18 17 16 39 39 H 1.08998 * 113.86767 * 337.34198 * 19 18 17 40 40 H 1.09005 * 113.86353 * 109.05131 * 19 18 17 41 41 H 1.08995 * 113.86586 * 221.66147 * 21 20 19 42 42 H 1.09000 * 113.98078 * 89.96380 * 21 20 19 43 43 H 1.09006 * 110.68370 * 83.17007 * 24 11 10 44 44 H 1.09005 * 110.68666 * 319.99997 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5149 -4.9307 -0.1234 12 6 2.4360 -6.0849 -0.0241 13 6 1.6679 -7.2158 0.6910 14 6 0.2996 -6.6098 1.0243 15 6 -0.1936 -7.0605 2.4047 16 6 -1.7212 -7.1461 2.1720 17 7 -1.8880 -7.3522 0.7271 18 6 -3.1196 -7.8345 0.0972 19 6 -2.8793 -8.7608 -1.1099 20 8 -3.9313 -8.0115 -1.7505 21 6 -3.7240 -6.8500 -0.9218 22 6 -0.7614 -7.0396 0.0556 23 8 -0.6266 -7.0972 -1.1483 24 6 0.5344 -5.0919 0.9839 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.8098 -3.6574 0.9330 29 1 2.9308 -3.5540 -0.8399 30 1 3.3161 -5.8088 0.5567 31 1 2.7327 -6.4102 -1.0213 32 1 2.1861 -7.5081 1.6042 33 1 1.5517 -8.0735 0.0285 34 1 0.2173 -8.0353 2.6678 35 1 0.0452 -6.3186 3.1668 36 1 -2.1401 -7.9876 2.7238 37 1 -2.2017 -6.2169 2.4782 38 1 -3.8416 -8.2228 0.8156 39 1 -1.9017 -8.6344 -1.5750 40 1 -3.1325 -9.8043 -0.9222 41 1 -4.6469 -6.3781 -0.5851 42 1 -3.0047 -6.1388 -1.3279 43 1 -0.3924 -4.5648 0.7573 44 1 0.9568 -4.7423 1.9261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:04 Heat of formation + Delta-G solvation = -30.968780 kcal Electronic energy + Delta-G solvation = -24801.351527 eV Core-core repulsion = 21334.115270 eV Total energy + Delta-G solvation = -3467.236257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50558 -39.92274 -37.58607 -36.30339 -33.84003 -32.50610 -30.80140 -28.47335 -28.36297 -27.79761 -26.64889 -24.89419 -23.64253 -22.14178 -21.50440 -20.59263 -19.95084 -18.61709 -17.23304 -16.60791 -16.37638 -16.22315 -15.71417 -15.35512 -14.84137 -14.60035 -14.41160 -14.21825 -13.95273 -13.55431 -13.19662 -13.05938 -12.79466 -12.66553 -12.41375 -12.23980 -12.00856 -11.63327 -11.52606 -11.30326 -11.24373 -10.98683 -10.88956 -10.82184 -10.62658 -10.49603 -9.95970 -9.90429 -9.34798 -9.25573 -9.12408 -8.80321 -8.34500 -7.77060 -5.99489 -4.01890 2.58491 2.78351 3.32552 3.38625 3.41423 3.56669 4.09292 4.16797 4.28627 4.41862 4.48714 4.60336 4.77729 4.85856 4.94555 5.02692 5.17815 5.26882 5.32740 5.33558 5.36693 5.49054 5.56423 5.63635 5.67295 5.74610 5.84992 5.88010 5.92569 5.98955 5.99890 6.16373 6.21094 6.38421 6.43037 6.50259 6.94078 6.99609 7.42018 7.50066 7.72691 7.88847 8.07857 8.23171 8.43192 9.05060 9.61876 11.11962 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.003985 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.442209 B = 7023.796248 C = 7733.368828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.054 3.946 11 N -0.511 5.511 12 C 0.038 3.962 13 C -0.104 4.104 14 C -0.103 4.103 15 C -0.122 4.122 16 C 0.102 3.898 17 N -0.623 5.623 18 C 0.092 3.908 19 C 0.021 3.979 20 O -0.377 6.377 21 C 0.026 3.974 22 C 0.543 3.457 23 O -0.498 6.498 24 C 0.069 3.931 25 H 0.260 0.740 26 H 0.025 0.975 27 H 0.014 0.986 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 -19.282 7.474 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.073 4.073 11 N -0.235 5.235 12 C -0.090 4.090 13 C -0.143 4.143 14 C -0.107 4.107 15 C -0.160 4.160 16 C -0.021 4.021 17 N -0.360 5.360 18 C -0.011 4.011 19 C -0.057 4.057 20 O -0.294 6.294 21 C -0.052 4.052 22 C 0.330 3.670 23 O -0.371 6.371 24 C -0.059 4.059 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.616 -19.257 6.046 20.704 hybrid contribution 0.842 1.091 1.052 1.734 sum -3.774 -18.165 7.098 19.865 Atomic orbital electron populations 1.69976 1.06039 1.26556 1.50716 1.24988 0.94820 0.99168 0.95277 0.86596 0.79784 0.83471 0.78163 1.20608 1.21243 1.19921 1.21186 0.92989 0.91020 1.50826 0.92753 1.19101 0.93968 0.90348 0.97650 1.22528 0.97249 0.88807 0.98696 1.64933 1.14147 1.02371 1.42037 1.22890 0.94738 0.91154 1.00235 1.22182 0.92839 0.98725 1.00506 1.21477 0.95571 0.98948 0.94727 1.22589 0.94077 1.03005 0.96363 1.22184 0.97150 1.02024 0.80739 1.48535 1.12586 1.66753 1.08097 1.24561 0.86377 0.95217 0.94994 1.24618 0.94078 0.96554 0.90427 1.89683 1.52320 1.26929 1.60515 1.24516 1.01073 0.90812 0.88801 1.20195 0.82980 0.75563 0.88231 1.90693 1.81652 1.51382 1.13396 1.22874 0.98434 0.90282 0.94330 0.93018 0.95639 0.96783 0.96136 0.91684 0.94033 0.90583 0.90765 0.90848 0.89807 0.88714 0.90506 0.90712 0.86272 0.87503 0.89334 0.88811 0.88997 0.89749 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.70 4.66 -27.88 -0.13 0.57 16 10 C 0.05 1.17 4.78 -3.82 -0.02 1.15 16 11 N -0.51 -9.69 5.36 -230.78 -1.24 -10.93 16 12 C 0.04 0.58 6.73 -2.54 -0.02 0.56 16 13 C -0.10 -1.28 5.98 -25.90 -0.15 -1.43 16 14 C -0.10 -1.33 0.73 -155.33 -0.11 -1.45 16 15 C -0.12 -1.06 6.17 -25.62 -0.16 -1.22 16 16 C 0.10 0.84 7.37 -2.89 -0.02 0.82 16 17 N -0.62 -7.09 3.17 -172.49 -0.55 -7.64 16 18 C 0.09 0.97 4.88 -66.85 -0.33 0.64 16 19 C 0.02 0.24 8.58 37.61 0.32 0.57 16 20 O -0.38 -5.32 12.45 -35.23 -0.44 -5.76 16 21 C 0.03 0.33 8.73 37.61 0.33 0.66 16 22 C 0.54 7.95 6.10 -11.32 -0.07 7.88 16 23 O -0.50 -9.14 14.54 5.56 0.08 -9.05 16 24 C 0.07 1.14 4.27 -2.44 -0.01 1.13 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.01 0.38 7.21 -51.93 -0.37 0.00 16 28 H 0.02 0.42 7.97 -51.93 -0.41 0.01 16 29 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.04 0.59 7.67 -51.93 -0.40 0.20 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 34 H 0.08 0.58 7.90 -51.92 -0.41 0.17 16 35 H 0.09 0.75 7.64 -51.93 -0.40 0.35 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.53 5.64 -51.93 -0.29 1.23 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 43 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 44 H 0.06 0.89 7.64 -51.93 -0.40 0.49 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -33.86 346.81 -9.18 -43.04 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.20 Total: -1.65 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.78 Total: -3.70 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.05 Total: -44.82 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.36 Total: -14.81 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.86 -9.18 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.069 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds