Wall clock time and date at job start Tue Mar 31 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00086 * 2 1 4 4 H 1.48494 * 109.46771 * 270.00326 * 3 2 1 5 5 H 1.48498 * 109.47142 * 29.99952 * 3 2 1 6 6 H 1.48495 * 109.47077 * 150.00087 * 3 2 1 7 7 C 1.37872 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99955 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46921 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47035 * 185.13520 * 10 9 7 12 12 C 1.48007 * 110.99930 * 184.29213 * 11 10 9 13 13 C 1.54281 * 107.02838 * 145.59017 * 12 11 10 14 14 C 1.53311 * 104.80009 * 358.00497 * 13 12 11 15 15 C 1.53356 * 111.50569 * 218.99891 * 14 13 12 16 16 C 1.54759 * 101.43844 * 214.25950 * 15 14 13 17 17 N 1.46906 * 105.53331 * 24.29678 * 16 15 14 18 18 C 1.46501 * 124.37145 * 163.24694 * 17 16 15 19 19 C 1.54037 * 113.81337 * 216.18938 * 18 17 16 20 20 O 1.44172 * 85.51854 * 223.19654 * 19 18 17 21 21 C 1.44181 * 93.34254 * 24.19485 * 20 19 18 22 22 C 1.34831 * 111.24790 * 343.22859 * 17 16 15 23 23 O 1.21282 * 125.18569 * 181.15583 * 22 17 16 24 24 C 1.48778 * 110.99996 * 301.91576 * 11 10 9 25 25 H 0.97005 * 119.99622 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47610 * 60.00069 * 9 7 2 27 27 H 1.09004 * 109.46842 * 299.99468 * 9 7 2 28 28 H 1.09002 * 109.47129 * 65.13589 * 10 9 7 29 29 H 1.08998 * 109.47575 * 305.13162 * 10 9 7 30 30 H 1.08997 * 109.92360 * 26.24650 * 12 11 10 31 31 H 1.09007 * 109.92031 * 264.93325 * 12 11 10 32 32 H 1.09002 * 110.37608 * 239.17111 * 13 12 11 33 33 H 1.09003 * 110.37514 * 116.83177 * 13 12 11 34 34 H 1.09007 * 111.02850 * 332.29856 * 15 14 13 35 35 H 1.09003 * 111.03101 * 96.21272 * 15 14 13 36 36 H 1.09003 * 110.23621 * 143.32121 * 16 15 14 37 37 H 1.09004 * 110.22933 * 265.28554 * 16 15 14 38 38 H 1.08996 * 113.00176 * 348.17547 * 18 17 16 39 39 H 1.08998 * 113.86767 * 337.34198 * 19 18 17 40 40 H 1.09005 * 113.86353 * 109.05131 * 19 18 17 41 41 H 1.08995 * 113.86586 * 221.66147 * 21 20 19 42 42 H 1.09000 * 113.98078 * 89.96380 * 21 20 19 43 43 H 1.09006 * 110.68370 * 83.17007 * 24 11 10 44 44 H 1.09005 * 110.68666 * 319.99997 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5149 -4.9307 -0.1234 12 6 2.4360 -6.0849 -0.0241 13 6 1.6679 -7.2158 0.6910 14 6 0.2996 -6.6098 1.0243 15 6 -0.1936 -7.0605 2.4047 16 6 -1.7212 -7.1461 2.1720 17 7 -1.8880 -7.3522 0.7271 18 6 -3.1196 -7.8345 0.0972 19 6 -2.8793 -8.7608 -1.1099 20 8 -3.9313 -8.0115 -1.7505 21 6 -3.7240 -6.8500 -0.9218 22 6 -0.7614 -7.0396 0.0556 23 8 -0.6266 -7.0972 -1.1483 24 6 0.5344 -5.0919 0.9839 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.8098 -3.6574 0.9330 29 1 2.9308 -3.5540 -0.8399 30 1 3.3161 -5.8088 0.5567 31 1 2.7327 -6.4102 -1.0213 32 1 2.1861 -7.5081 1.6042 33 1 1.5517 -8.0735 0.0285 34 1 0.2173 -8.0353 2.6678 35 1 0.0452 -6.3186 3.1668 36 1 -2.1401 -7.9876 2.7238 37 1 -2.2017 -6.2169 2.4782 38 1 -3.8416 -8.2228 0.8156 39 1 -1.9017 -8.6344 -1.5750 40 1 -3.1325 -9.8043 -0.9222 41 1 -4.6469 -6.3781 -0.5851 42 1 -3.0047 -6.1388 -1.3279 43 1 -0.3924 -4.5648 0.7573 44 1 0.9568 -4.7423 1.9261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:03 Heat of formation + Delta-G solvation = -56.722290 kcal Electronic energy + Delta-G solvation = -24802.468283 eV Core-core repulsion = 21334.115270 eV Total energy + Delta-G solvation = -3468.353013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50956 -40.97551 -38.88603 -37.37606 -35.64010 -34.09904 -32.17335 -30.03431 -29.54213 -28.72363 -27.62194 -26.57355 -25.07687 -23.12067 -22.80018 -21.64467 -21.60557 -19.69236 -18.60404 -18.10302 -17.53554 -17.21838 -16.94577 -16.55001 -16.46461 -16.05637 -15.62894 -15.53029 -15.04233 -14.61630 -14.53786 -14.30814 -14.08685 -13.88175 -13.65422 -13.46650 -13.38307 -13.18432 -12.89040 -12.63527 -12.44699 -12.41836 -12.28276 -12.16339 -11.90842 -11.72447 -11.65044 -11.34974 -11.24184 -11.00779 -10.58303 -10.32786 -9.72531 -9.23004 -8.22061 -6.34106 1.38949 1.41154 1.47326 1.51956 1.90859 2.39090 2.64176 3.06215 3.11430 3.19054 3.35945 3.45188 3.58767 3.87355 3.92977 4.03078 4.13241 4.22741 4.38315 4.41539 4.43219 4.47495 4.50445 4.57505 4.64611 4.68295 4.73475 4.80258 4.88820 4.91758 4.96795 4.99869 5.00778 5.05503 5.14327 5.22250 5.42277 5.57639 5.62158 5.76543 5.99628 6.08059 6.16912 6.30116 6.82560 7.17516 7.35481 8.90265 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.003985 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.442209 B = 7023.796248 C = 7733.368828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.072 3.928 11 N -0.541 5.541 12 C 0.035 3.965 13 C -0.094 4.094 14 C -0.101 4.101 15 C -0.112 4.112 16 C 0.096 3.904 17 N -0.618 5.618 18 C 0.106 3.894 19 C 0.016 3.984 20 O -0.399 6.399 21 C 0.016 3.984 22 C 0.529 3.471 23 O -0.549 6.549 24 C 0.072 3.928 25 H 0.264 0.736 26 H -0.020 1.020 27 H -0.003 1.003 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -20.729 10.397 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.001 3.999 10 C -0.055 4.055 11 N -0.265 5.265 12 C -0.093 4.093 13 C -0.133 4.133 14 C -0.105 4.105 15 C -0.149 4.149 16 C -0.025 4.025 17 N -0.353 5.353 18 C 0.003 3.997 19 C -0.061 4.061 20 O -0.317 6.317 21 C -0.062 4.062 22 C 0.317 3.683 23 O -0.426 6.426 24 C -0.057 4.057 25 H 0.073 0.927 26 H -0.002 1.002 27 H 0.015 0.985 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.183 0.817 39 H 0.094 0.906 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.095 -20.727 9.010 22.969 hybrid contribution 0.614 1.540 0.071 1.659 sum -3.482 -19.187 9.081 21.511 Atomic orbital electron populations 1.70123 1.07923 1.27803 1.51406 1.25981 0.95735 1.03397 0.94474 0.85409 0.78769 0.78200 0.78434 1.20083 1.20491 1.18364 1.21621 0.93575 0.92164 1.51017 0.92011 1.18892 0.94104 0.92319 0.94589 1.22143 0.95800 0.88703 0.98894 1.64775 1.15372 1.02390 1.43990 1.22949 0.94979 0.90734 1.00603 1.22195 0.92154 0.97181 1.01732 1.21465 0.95770 0.95935 0.97301 1.22675 0.93995 1.04805 0.93456 1.22504 0.97336 1.03922 0.78733 1.48646 1.11840 1.65273 1.09513 1.24629 0.86514 0.93406 0.95186 1.24659 0.92289 0.98440 0.90719 1.89653 1.52859 1.27570 1.61638 1.24515 1.01500 0.90497 0.89717 1.20644 0.84475 0.75264 0.87892 1.90668 1.82783 1.53563 1.15634 1.22776 0.96198 0.93068 0.93627 0.92750 1.00153 0.98471 0.94860 0.92504 0.92550 0.91616 0.86925 0.90942 0.86678 0.87463 0.86322 0.90656 0.81656 0.90629 0.85969 0.86405 0.93300 0.93470 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.04 2.13 4.66 29.85 0.14 2.27 16 10 C 0.07 3.22 4.78 86.30 0.41 3.63 16 11 N -0.54 -21.29 5.36 -884.05 -4.74 -26.02 16 12 C 0.03 1.05 6.73 86.52 0.58 1.63 16 13 C -0.09 -2.13 5.98 31.13 0.19 -1.94 16 14 C -0.10 -2.48 0.73 -52.71 -0.04 -2.52 16 15 C -0.11 -1.50 6.17 31.31 0.19 -1.31 16 16 C 0.10 1.24 7.37 86.90 0.64 1.88 16 17 N -0.62 -13.11 3.17 -829.04 -2.63 -15.74 16 18 C 0.11 2.04 4.88 45.69 0.22 2.26 16 19 C 0.02 0.37 8.58 72.28 0.62 0.99 16 20 O -0.40 -11.42 12.45 -148.98 -1.86 -13.28 16 21 C 0.02 0.41 8.73 72.28 0.63 1.04 16 22 C 0.53 15.66 6.10 87.42 0.53 16.19 16 23 O -0.55 -21.48 14.54 -3.04 -0.04 -21.52 16 24 C 0.07 2.42 4.27 86.16 0.37 2.79 16 25 H 0.26 15.36 8.31 -92.70 -0.77 14.58 16 26 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 27 H 0.00 -0.18 7.21 -2.39 -0.02 -0.19 16 28 H 0.03 1.38 7.97 -2.39 -0.02 1.36 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.06 1.52 7.67 -2.39 -0.02 1.51 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.06 16 32 H 0.11 1.70 7.82 -2.39 -0.02 1.68 16 33 H 0.07 1.68 7.82 -2.39 -0.02 1.66 16 34 H 0.11 0.92 7.90 -2.38 -0.02 0.90 16 35 H 0.11 1.25 7.64 -2.39 -0.02 1.23 16 36 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.27 5.64 -2.39 -0.01 2.26 16 40 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16 43 H 0.05 1.91 7.71 -2.38 -0.02 1.89 16 44 H 0.07 2.05 7.64 -2.38 -0.02 2.03 16 Total: -1.00 -80.16 346.81 -0.79 -80.95 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.98 Total: 10.66 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.18 Total: -4.16 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -7.08 Total: -99.51 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.90 Total: -34.80 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -80.16 -0.79 -80.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.230 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds