Wall clock time and date at job start Tue Mar 31 2020 03:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28722 * 125.32395 * 2 1 4 4 N 1.28981 * 108.99311 * 179.97438 * 3 2 1 5 5 C 1.34187 * 107.25175 * 0.02562 * 4 3 2 6 6 C 1.47998 * 126.70154 * 180.02562 * 5 4 3 7 7 O 1.21537 * 120.00480 * 179.97438 * 6 5 4 8 8 N 1.34785 * 119.99768 * 359.97438 * 6 5 4 9 9 C 1.46492 * 119.99965 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47087 * 175.12503 * 9 8 6 11 11 N 1.46496 * 110.01600 * 303.89881 * 10 9 8 12 12 C 1.36941 * 120.00302 * 301.45978 * 11 10 9 13 13 H 1.07999 * 120.00071 * 354.61196 * 12 11 10 14 14 C 1.38809 * 120.00227 * 174.60113 * 12 11 10 15 15 N 1.31623 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00153 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47108 * 60.00518 * 16 14 12 18 18 H 1.48505 * 109.47400 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47432 * 300.00553 * 16 14 12 20 20 C 1.54270 * 110.03377 * 182.46216 * 10 9 8 21 21 C 1.54893 * 104.19398 * 217.10535 * 20 10 9 22 22 C 1.54888 * 102.74936 * 37.94099 * 21 20 10 23 23 C 1.53869 * 110.03325 * 65.29127 * 10 9 8 24 24 N 1.28871 * 125.32165 * 179.69502 * 2 1 3 25 25 H 1.08998 * 109.47141 * 90.02214 * 1 2 3 26 26 H 1.08997 * 109.46910 * 210.02249 * 1 2 3 27 27 H 1.08994 * 109.46818 * 330.02335 * 1 2 3 28 28 H 0.96998 * 119.99539 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.47137 * 295.12330 * 9 8 6 30 30 H 1.09006 * 109.47378 * 55.12238 * 9 8 6 31 31 H 0.96997 * 120.00131 * 121.46420 * 11 10 9 32 32 H 0.96999 * 120.00046 * 179.97438 * 15 14 12 33 33 H 1.09004 * 110.48322 * 335.78014 * 20 10 9 34 34 H 1.08991 * 110.49108 * 98.42479 * 20 10 9 35 35 H 1.08999 * 110.75506 * 279.62090 * 21 20 10 36 36 H 1.09008 * 110.75081 * 156.25176 * 21 20 10 37 37 H 1.09001 * 110.48695 * 203.37851 * 22 21 20 38 38 H 1.09000 * 110.48924 * 80.73681 * 22 21 20 39 39 H 1.08997 * 110.03663 * 238.56525 * 23 10 9 40 40 H 1.09001 * 110.03534 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2093 1.0502 0.0000 4 7 3.4470 0.6876 0.0005 5 6 3.4686 -0.6541 0.0003 6 6 4.6693 -1.5195 0.0013 7 8 4.5469 -2.7287 0.0014 8 7 5.8984 -0.9665 0.0020 9 6 7.0869 -1.8229 0.0024 10 6 8.3410 -0.9550 -0.1194 11 7 8.2577 -0.1191 -1.3195 12 6 8.1175 -0.7012 -2.5511 13 1 8.1556 -1.7762 -2.6478 14 6 7.9261 0.0904 -3.6752 15 7 7.8799 1.4005 -3.5574 16 14 7.7340 -0.7037 -5.3550 17 1 6.5529 -1.6039 -5.3449 18 1 7.5439 0.3515 -6.3825 19 1 8.9529 -1.4900 -5.6732 20 6 9.5975 -1.8479 -0.1823 21 6 10.6628 -1.0616 0.6215 22 6 9.8363 -0.4557 1.7829 23 6 8.4929 -0.0699 1.1301 24 7 2.2101 -1.0515 0.0056 25 1 -0.3633 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 5.9960 -0.0014 0.0015 29 1 7.1261 -2.3895 0.9327 30 1 7.0386 -2.5120 -0.8409 31 1 8.3020 0.8467 -1.2418 32 1 7.7465 1.9537 -4.3430 33 1 9.4032 -2.8134 0.2847 34 1 9.9200 -1.9805 -1.2149 35 1 11.1049 -0.2747 0.0103 36 1 11.4316 -1.7332 1.0038 37 1 10.3330 0.4276 2.1843 38 1 9.6805 -1.1964 2.5673 39 1 8.5055 0.9817 0.8435 40 1 7.6733 -0.2589 1.8234 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:59 Heat of formation + Delta-G solvation = 105.221527 kcal Electronic energy + Delta-G solvation = -24113.823014 eV Core-core repulsion = 20581.244819 eV Total energy + Delta-G solvation = -3532.578195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.33928 -39.43005 -38.08995 -35.23957 -34.15444 -33.30231 -33.09799 -30.68625 -29.13598 -28.23577 -27.78087 -25.46775 -24.04748 -23.20289 -22.72916 -20.84753 -20.00033 -18.82111 -18.03204 -17.58967 -16.98008 -16.75699 -15.70894 -15.38737 -14.72561 -14.65037 -14.16219 -14.02974 -13.82577 -13.67805 -13.38037 -13.28580 -12.76672 -12.62962 -12.11804 -11.96195 -11.42475 -11.12034 -11.08243 -11.04692 -10.75399 -10.69924 -10.61918 -10.51148 -10.33105 -10.22465 -10.12215 -9.96304 -9.85300 -9.61842 -8.88562 -8.54881 -6.97974 -5.76457 -3.05825 1.03944 1.61139 1.74803 3.14099 3.43821 3.44969 3.49747 3.51215 4.08383 4.28971 4.58627 4.59773 4.85283 4.88890 5.12976 5.15072 5.26086 5.37183 5.58343 5.65849 5.69752 5.77189 5.95384 5.96107 5.97406 6.12154 6.17602 6.26445 6.34414 6.43084 6.56704 6.58684 6.79511 6.82357 6.90937 7.07201 7.73358 7.83096 8.23596 8.41620 8.47417 9.53628 10.07493 10.42651 11.45293 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.005553 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.000155 B = 5040.734196 C = 6468.990608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.060 5.060 4 N -0.244 5.244 5 C 0.139 3.861 6 C 0.610 3.390 7 O -0.525 6.525 8 N -0.671 5.671 9 C 0.118 3.882 10 C 0.189 3.811 11 N -0.710 5.710 12 C -0.236 4.236 13 H 0.069 0.931 14 C -0.006 4.006 15 N -0.928 5.928 16 Si 0.900 3.100 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.286 1.286 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.127 4.127 24 N -0.255 5.255 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.413 0.587 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 -1.804 11.354 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.054 5.054 3 N -0.054 5.054 4 N -0.118 5.118 5 C -0.145 4.145 6 C 0.389 3.611 7 O -0.399 6.399 8 N -0.321 5.321 9 C -0.007 4.007 10 C 0.096 3.904 11 N -0.351 5.351 12 C -0.367 4.367 13 H 0.087 0.913 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.731 3.269 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.212 1.212 20 C -0.171 4.171 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.165 4.165 24 N -0.109 5.109 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.250 0.750 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.399 -2.224 11.186 14.779 hybrid contribution -0.097 0.016 -1.207 1.211 sum -9.496 -2.208 9.979 13.951 Atomic orbital electron populations 1.22478 0.68872 1.06918 1.06284 1.50230 1.10962 1.00866 1.43343 1.78933 0.96552 1.14031 1.15847 1.76216 1.09649 1.10233 1.15730 1.25488 0.93227 0.90316 1.05461 1.16095 0.80920 0.85600 0.78530 1.90803 1.85703 1.12824 1.50600 1.45482 1.03871 1.11990 1.70771 1.22091 0.84315 0.93432 1.00884 1.20465 0.91252 0.90826 0.87825 1.42552 1.87112 1.05029 1.00450 1.19029 1.41623 0.91677 0.84409 0.91261 1.24683 1.02522 0.95350 0.97725 1.69639 1.56420 1.02602 1.28901 0.86390 0.77980 0.78005 0.84554 1.21395 1.21809 1.21236 1.22818 0.95803 0.97274 1.01212 1.22385 0.97175 0.99350 0.96528 1.22303 0.96015 0.99863 0.97622 1.22450 0.97114 1.00453 0.96532 1.75057 1.02600 1.14263 1.18937 0.87814 0.86962 0.86760 0.74979 0.92389 0.90814 0.77951 0.93520 0.92839 0.90181 0.91363 0.92723 0.92338 0.92279 0.91062 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.62 59.85 0.70 1.23 16 2 N -0.14 -1.83 4.39 -16.65 -0.07 -1.90 16 3 N -0.06 -0.92 13.23 60.35 0.80 -0.12 16 4 N -0.24 -4.38 12.26 32.10 0.39 -3.99 16 5 C 0.14 2.57 8.14 -156.24 -1.27 1.30 16 6 C 0.61 12.07 7.84 -12.26 -0.10 11.97 16 7 O -0.53 -11.49 17.09 5.33 0.09 -11.40 16 8 N -0.67 -12.65 5.10 -61.20 -0.31 -12.97 16 9 C 0.12 2.18 3.99 -4.05 -0.02 2.16 16 10 C 0.19 3.42 0.68 -130.70 -0.09 3.33 16 11 N -0.71 -16.09 4.76 -46.20 -0.22 -16.31 16 12 C -0.24 -6.14 8.39 -15.06 -0.13 -6.27 16 13 H 0.07 1.80 7.23 -52.49 -0.38 1.42 16 14 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 15 N -0.93 -27.11 13.07 55.49 0.73 -26.39 16 16 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 C -0.13 -2.21 5.94 -25.07 -0.15 -2.36 16 21 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 22 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 23 C -0.13 -1.96 5.80 -25.61 -0.15 -2.11 16 24 N -0.25 -4.18 12.17 32.11 0.39 -3.79 16 25 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.41 7.82 7.74 -40.82 -0.32 7.50 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.53 7.49 -51.93 -0.39 1.14 16 31 H 0.39 9.44 7.28 -40.82 -0.30 9.14 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 33 H 0.05 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.15 7.44 -51.93 -0.39 0.77 16 40 H 0.06 0.88 7.55 -51.93 -0.39 0.49 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -33.14 337.72 -5.23 -38.37 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.45 Total: 10.66 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.64 Total: 5.29 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: 1.70 Total: -65.46 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.14 -5.23 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.595 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds