Wall clock time and date at job start Tue Mar 31 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47985 * 2 1 4 4 C 1.53095 * 109.47720 * 239.97984 * 2 1 3 5 5 C 1.52478 * 109.51826 * 180.83092 * 4 2 1 6 6 C 1.52477 * 110.72566 * 58.75542 * 5 4 2 7 7 C 1.53095 * 109.51697 * 301.24869 * 6 5 4 8 8 C 1.53001 * 109.47698 * 179.15668 * 7 6 5 9 9 C 1.52999 * 109.47891 * 299.17246 * 7 6 5 10 10 C 1.52999 * 109.49181 * 120.02586 * 2 1 3 11 11 N 1.46851 * 110.49085 * 296.00349 * 5 4 2 12 12 C 1.34674 * 106.41827 * 241.44279 * 11 5 4 13 13 O 1.21531 * 123.79311 * 179.97438 * 12 11 5 14 14 N 1.33873 * 112.41921 * 0.02562 * 12 11 5 15 15 C 1.46511 * 124.19176 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46857 * 90.02335 * 15 14 12 17 17 H 1.08004 * 120.00489 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99857 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99850 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47029 * 89.99844 * 20 18 16 22 22 H 1.48501 * 109.47208 * 210.00245 * 20 18 16 23 23 H 1.48504 * 109.47004 * 329.99912 * 20 18 16 24 24 C 1.34913 * 111.61272 * 359.97438 * 14 12 11 25 25 O 1.21236 * 127.25640 * 179.97438 * 24 14 12 26 26 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47130 * 300.01604 * 1 2 3 28 28 H 1.08999 * 109.47535 * 60.01995 * 1 2 3 29 29 H 1.09003 * 109.46370 * 60.81993 * 4 2 1 30 30 H 1.08997 * 109.45800 * 300.84307 * 4 2 1 31 31 H 1.09000 * 109.46154 * 181.23213 * 6 5 4 32 32 H 1.09002 * 109.46313 * 61.26316 * 6 5 4 33 33 H 1.09004 * 109.46753 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47097 * 300.01880 * 8 7 6 35 35 H 1.09000 * 109.47730 * 60.02205 * 8 7 6 36 36 H 1.08993 * 109.47419 * 327.43114 * 9 7 6 37 37 H 1.09004 * 109.46818 * 87.42731 * 9 7 6 38 38 H 1.08994 * 109.47192 * 207.42269 * 9 7 6 39 39 H 1.08994 * 109.45328 * 60.35960 * 10 2 1 40 40 H 1.09003 * 109.46170 * 300.42009 * 10 2 1 41 41 H 0.96997 * 126.78894 * 61.46626 * 11 5 4 42 42 H 1.08998 * 109.46480 * 210.01951 * 15 14 12 43 43 H 1.08995 * 109.47050 * 330.02134 * 15 14 12 44 44 H 0.97001 * 120.00074 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5651 -0.7407 -1.2403 6 6 4.0885 -1.4389 0.0101 7 6 3.5705 -0.7142 1.2553 8 6 4.0790 -1.4279 2.5095 9 6 4.0738 0.7306 1.2510 10 6 2.0405 -0.7217 1.2487 11 7 4.0965 0.6256 -1.3268 12 6 4.8160 0.6829 -2.4637 13 8 5.3987 1.6788 -2.8454 14 7 4.8163 -0.4800 -3.1269 15 6 5.5164 -0.7049 -4.3942 16 6 6.9161 -1.1888 -4.1157 17 1 7.2511 -1.3156 -3.0968 18 6 7.7693 -1.4695 -5.1618 19 7 7.3617 -1.3145 -6.4025 20 14 9.5047 -2.0686 -4.8167 21 1 9.5104 -3.5515 -4.7403 22 1 10.4077 -1.6257 -5.9093 23 1 9.9756 -1.5046 -3.5262 24 6 4.0921 -1.4191 -2.4837 25 8 3.9033 -2.5654 -2.8304 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8899 28 1 -0.3634 0.5135 -0.8901 29 1 1.6892 -0.2001 -2.1398 30 1 1.6648 -1.7453 -1.2568 31 1 5.1784 -1.4212 0.0067 32 1 3.7422 -2.4724 0.0210 33 1 3.7097 -0.9121 3.3959 34 1 3.7204 -2.4573 2.5123 35 1 5.1690 -1.4229 2.5138 36 1 5.0563 0.7718 0.7810 37 1 3.3774 1.3563 0.6927 38 1 4.1460 1.0932 2.2764 39 1 1.6825 -1.7512 1.2449 40 1 1.6711 -0.2126 2.1390 41 1 3.9570 1.3444 -0.6906 42 1 4.9816 -1.4553 -4.9763 43 1 5.5594 0.2281 -4.9560 44 1 7.9621 -1.5116 -7.1384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010023478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:36 Heat of formation + Delta-G solvation = -53.704444 kcal Electronic energy + Delta-G solvation = -25679.704733 eV Core-core repulsion = 22211.482583 eV Total energy + Delta-G solvation = -3468.222150 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29699 -39.27843 -37.82937 -35.27817 -34.38890 -34.21278 -32.41980 -30.44113 -28.16747 -27.23025 -26.82479 -26.66933 -24.09928 -23.05054 -21.39875 -20.61150 -19.68621 -18.83279 -17.28584 -16.77649 -15.91679 -15.76857 -15.37202 -15.16729 -14.85294 -14.68168 -14.27474 -14.09808 -13.93037 -13.42547 -13.29356 -13.02807 -12.82679 -12.38099 -12.31219 -12.16813 -11.98811 -11.76563 -11.57481 -11.50565 -11.36787 -11.10096 -11.04749 -10.83840 -10.73481 -10.56171 -10.36144 -10.27393 -9.97775 -9.81711 -9.28203 -8.99972 -8.52360 -8.49647 -6.12251 -4.17179 2.27148 3.04943 3.30423 3.35403 3.40086 3.66301 3.82454 4.29581 4.36335 4.42034 4.44646 4.71480 4.73866 4.84288 4.98440 5.08958 5.20008 5.24189 5.33365 5.40211 5.43859 5.48967 5.56996 5.61645 5.67470 5.72813 5.76550 5.83994 5.87178 5.93602 6.01729 6.06352 6.10012 6.13714 6.21577 6.30221 6.64501 7.09336 7.22801 7.26298 7.80758 8.01812 8.05441 8.14809 8.76855 8.91501 9.47511 10.97251 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.004861 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.987614 B = 5758.276410 C = 6061.625611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.107 4.107 5 C 0.124 3.876 6 C -0.102 4.102 7 C -0.061 4.061 8 C -0.139 4.139 9 C -0.159 4.159 10 C -0.105 4.105 11 N -0.735 5.735 12 C 0.696 3.304 13 O -0.544 6.544 14 N -0.557 5.557 15 C 0.248 3.752 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.891 5.891 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.527 3.473 25 O -0.473 6.473 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.432 0.568 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 1.857 17.653 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.145 4.145 5 C 0.033 3.967 6 C -0.141 4.141 7 C -0.061 4.061 8 C -0.197 4.197 9 C -0.216 4.216 10 C -0.142 4.142 11 N -0.407 5.407 12 C 0.397 3.603 13 O -0.418 6.418 14 N -0.301 5.301 15 C 0.131 3.869 16 C -0.571 4.571 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.313 3.687 25 O -0.344 6.344 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.283 0.717 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.667 1.740 16.915 21.204 hybrid contribution 1.003 -0.025 0.265 1.038 sum -11.664 1.715 17.180 20.836 Atomic orbital electron populations 1.21800 0.94678 1.02049 1.01750 1.21210 0.95778 0.99828 0.94296 0.90704 1.21708 0.91211 1.02702 0.98924 1.20994 0.95960 0.83766 0.96000 1.21759 1.01557 0.99573 0.91212 1.20517 0.95330 0.95503 0.94746 1.21863 1.01329 1.00244 0.96229 1.22371 1.01757 0.95505 1.01959 1.21707 0.94064 1.01102 0.97359 1.46552 1.55400 1.13350 1.25413 1.16176 0.79573 0.83808 0.80721 1.90942 1.47597 1.32665 1.70570 1.46897 1.46632 1.11036 1.25495 1.19583 0.91709 0.98960 0.76683 1.21242 0.96759 1.45714 0.93384 0.92269 1.24893 0.99011 0.95124 0.94725 1.69921 1.36624 1.48069 0.98322 0.86400 0.83434 0.78972 0.78092 1.20399 1.20897 1.19789 1.20451 0.78024 0.85709 0.84545 1.90722 1.57965 1.15392 1.70301 0.92456 0.92598 0.92530 0.90849 0.89543 0.90529 0.89575 0.92522 0.92445 0.92379 0.91305 0.91933 0.92252 0.91370 0.91605 0.71730 0.93104 0.92875 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.20 37.16 0.34 -0.73 16 2 C -0.09 -0.80 2.39 -90.57 -0.22 -1.02 16 3 H 0.07 0.64 5.57 -51.93 -0.29 0.36 16 4 C -0.11 -1.23 4.27 -26.95 -0.11 -1.34 16 5 C 0.12 1.78 0.83 -133.10 -0.11 1.67 16 6 C -0.10 -1.26 3.79 -26.95 -0.10 -1.36 16 7 C -0.06 -0.55 0.77 -154.46 -0.12 -0.67 16 8 C -0.14 -1.12 8.33 37.16 0.31 -0.82 16 9 C -0.16 -1.43 7.05 37.16 0.26 -1.16 16 10 C -0.10 -0.83 4.00 -26.73 -0.11 -0.93 16 11 N -0.73 -11.08 4.30 -53.87 -0.23 -11.31 16 12 C 0.70 14.59 8.63 -87.82 -0.76 13.84 16 13 O -0.54 -13.36 17.48 5.34 0.09 -13.26 16 14 N -0.56 -12.66 2.59 -122.10 -0.32 -12.98 16 15 C 0.25 6.72 5.46 -5.19 -0.03 6.69 16 16 C -0.53 -15.49 9.39 -34.44 -0.32 -15.81 16 17 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 18 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 19 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.53 10.55 6.95 -10.71 -0.07 10.48 16 25 O -0.47 -10.61 17.77 5.59 0.10 -10.51 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.74 6.98 -51.93 -0.36 0.38 16 37 H 0.06 0.53 3.72 -51.93 -0.19 0.33 16 38 H 0.06 0.45 7.85 -51.93 -0.41 0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.43 5.36 4.72 -40.82 -0.19 5.16 16 42 H 0.05 1.44 8.01 -51.93 -0.42 1.02 16 43 H 0.05 1.53 7.86 -51.93 -0.41 1.12 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -33.15 341.25 -7.52 -40.67 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.88 Total: 0.38 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -1.14 Total: 10.62 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.19 Total: -50.13 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.19 Total: -23.78 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.15 -7.52 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010023478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.039 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds