Wall clock time and date at job start Tue Mar 31 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47985 * 2 1 4 4 C 1.53095 * 109.47720 * 239.97984 * 2 1 3 5 5 C 1.52478 * 109.51826 * 180.83092 * 4 2 1 6 6 C 1.52477 * 110.72566 * 58.75542 * 5 4 2 7 7 C 1.53095 * 109.51697 * 301.24869 * 6 5 4 8 8 C 1.53001 * 109.47698 * 179.15668 * 7 6 5 9 9 C 1.52999 * 109.47891 * 299.17246 * 7 6 5 10 10 C 1.52999 * 109.49181 * 120.02586 * 2 1 3 11 11 N 1.46851 * 110.49085 * 296.00349 * 5 4 2 12 12 C 1.34674 * 106.41827 * 241.44279 * 11 5 4 13 13 O 1.21531 * 123.79311 * 179.97438 * 12 11 5 14 14 N 1.33873 * 112.41921 * 0.02562 * 12 11 5 15 15 C 1.46511 * 124.19176 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46857 * 90.02335 * 15 14 12 17 17 H 1.08004 * 120.00489 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99857 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99850 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47029 * 89.99844 * 20 18 16 22 22 H 1.48501 * 109.47208 * 210.00245 * 20 18 16 23 23 H 1.48504 * 109.47004 * 329.99912 * 20 18 16 24 24 C 1.34913 * 111.61272 * 359.97438 * 14 12 11 25 25 O 1.21236 * 127.25640 * 179.97438 * 24 14 12 26 26 H 1.09005 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47130 * 300.01604 * 1 2 3 28 28 H 1.08999 * 109.47535 * 60.01995 * 1 2 3 29 29 H 1.09003 * 109.46370 * 60.81993 * 4 2 1 30 30 H 1.08997 * 109.45800 * 300.84307 * 4 2 1 31 31 H 1.09000 * 109.46154 * 181.23213 * 6 5 4 32 32 H 1.09002 * 109.46313 * 61.26316 * 6 5 4 33 33 H 1.09004 * 109.46753 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47097 * 300.01880 * 8 7 6 35 35 H 1.09000 * 109.47730 * 60.02205 * 8 7 6 36 36 H 1.08993 * 109.47419 * 327.43114 * 9 7 6 37 37 H 1.09004 * 109.46818 * 87.42731 * 9 7 6 38 38 H 1.08994 * 109.47192 * 207.42269 * 9 7 6 39 39 H 1.08994 * 109.45328 * 60.35960 * 10 2 1 40 40 H 1.09003 * 109.46170 * 300.42009 * 10 2 1 41 41 H 0.96997 * 126.78894 * 61.46626 * 11 5 4 42 42 H 1.08998 * 109.46480 * 210.01951 * 15 14 12 43 43 H 1.08995 * 109.47050 * 330.02134 * 15 14 12 44 44 H 0.97001 * 120.00074 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5651 -0.7407 -1.2403 6 6 4.0885 -1.4389 0.0101 7 6 3.5705 -0.7142 1.2553 8 6 4.0790 -1.4279 2.5095 9 6 4.0738 0.7306 1.2510 10 6 2.0405 -0.7217 1.2487 11 7 4.0965 0.6256 -1.3268 12 6 4.8160 0.6829 -2.4637 13 8 5.3987 1.6788 -2.8454 14 7 4.8163 -0.4800 -3.1269 15 6 5.5164 -0.7049 -4.3942 16 6 6.9161 -1.1888 -4.1157 17 1 7.2511 -1.3156 -3.0968 18 6 7.7693 -1.4695 -5.1618 19 7 7.3617 -1.3145 -6.4025 20 14 9.5047 -2.0686 -4.8167 21 1 9.5104 -3.5515 -4.7403 22 1 10.4077 -1.6257 -5.9093 23 1 9.9756 -1.5046 -3.5262 24 6 4.0921 -1.4191 -2.4837 25 8 3.9033 -2.5654 -2.8304 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5141 0.8899 28 1 -0.3634 0.5135 -0.8901 29 1 1.6892 -0.2001 -2.1398 30 1 1.6648 -1.7453 -1.2568 31 1 5.1784 -1.4212 0.0067 32 1 3.7422 -2.4724 0.0210 33 1 3.7097 -0.9121 3.3959 34 1 3.7204 -2.4573 2.5123 35 1 5.1690 -1.4229 2.5138 36 1 5.0563 0.7718 0.7810 37 1 3.3774 1.3563 0.6927 38 1 4.1460 1.0932 2.2764 39 1 1.6825 -1.7512 1.2449 40 1 1.6711 -0.2126 2.1390 41 1 3.9570 1.3444 -0.6906 42 1 4.9816 -1.4553 -4.9763 43 1 5.5594 0.2281 -4.9560 44 1 7.9621 -1.5116 -7.1384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010023478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:35 Heat of formation + Delta-G solvation = -74.951678 kcal Electronic energy + Delta-G solvation = -25680.626082 eV Core-core repulsion = 22211.482583 eV Total energy + Delta-G solvation = -3469.143499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.77678 -40.40360 -39.55506 -36.95534 -36.07141 -35.04649 -34.43258 -31.63301 -30.00647 -28.23989 -27.53951 -27.43983 -25.90905 -24.81794 -22.77966 -21.58588 -21.16267 -19.82980 -18.99193 -18.64204 -17.48408 -17.34392 -16.91498 -16.57387 -16.12105 -15.96801 -15.76716 -15.29340 -15.11978 -14.86154 -14.49147 -14.32792 -13.91282 -13.73758 -13.61775 -13.20143 -13.08714 -12.85559 -12.80121 -12.72127 -12.55391 -12.44303 -12.35994 -12.17930 -12.00758 -11.94058 -11.79714 -11.59227 -11.23524 -11.03677 -10.79143 -10.68441 -10.61467 -10.28257 -8.35486 -6.50746 0.63095 1.33100 1.37049 1.41104 1.49892 2.07524 2.24392 2.34310 2.94440 2.98577 3.43408 3.52381 3.80662 3.91233 3.98480 4.16517 4.25869 4.31470 4.42880 4.56183 4.60518 4.66081 4.77662 4.81309 4.82584 4.88252 4.95748 4.97206 4.98760 5.03647 5.07131 5.15534 5.18204 5.22245 5.31620 5.43308 5.46609 5.52904 5.53708 5.60730 5.81053 5.84482 6.29945 6.45223 6.56374 7.13277 7.25110 8.74622 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.004861 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.987614 B = 5758.276410 C = 6061.625611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.140 3.860 6 C -0.102 4.102 7 C -0.054 4.054 8 C -0.137 4.137 9 C -0.162 4.162 10 C -0.101 4.101 11 N -0.701 5.701 12 C 0.692 3.308 13 O -0.587 6.587 14 N -0.573 5.573 15 C 0.263 3.737 16 C -0.557 4.557 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.975 3.025 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.516 3.484 25 O -0.503 6.503 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.448 0.552 42 H 0.029 0.971 43 H 0.025 0.975 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 1.754 20.781 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.143 4.143 5 C 0.049 3.951 6 C -0.140 4.140 7 C -0.054 4.054 8 C -0.195 4.195 9 C -0.219 4.219 10 C -0.138 4.138 11 N -0.374 5.374 12 C 0.393 3.607 13 O -0.464 6.464 14 N -0.317 5.317 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.560 5.560 20 Si 0.798 3.202 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.193 1.193 24 C 0.305 3.695 25 O -0.376 6.376 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.303 0.697 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.618 1.642 20.109 24.342 hybrid contribution 1.236 -0.018 -0.738 1.440 sum -12.382 1.624 19.370 23.047 Atomic orbital electron populations 1.21776 0.93205 1.02570 1.02433 1.21218 0.96899 0.99573 0.92863 0.90301 1.21799 0.88186 1.03719 1.00644 1.21130 0.97922 0.82245 0.93782 1.21845 1.00414 1.00230 0.91547 1.20511 0.96494 0.95129 0.93297 1.21850 1.00777 1.00674 0.96151 1.22385 1.00583 0.95607 1.03313 1.21715 0.92501 1.01832 0.97723 1.46453 1.53370 1.14313 1.23303 1.16302 0.79924 0.82665 0.81802 1.90901 1.49699 1.33824 1.71947 1.46859 1.47179 1.12746 1.24882 1.19013 0.91537 0.96623 0.78508 1.21470 0.97903 1.46752 0.93348 0.92956 1.25869 1.03560 0.94807 0.94360 1.70028 1.38387 1.48289 0.99270 0.85307 0.77755 0.78847 0.78290 1.19154 1.19576 1.19346 1.21452 0.77067 0.85197 0.85828 1.90686 1.58853 1.16581 1.71433 0.92065 0.90815 0.93013 0.91701 0.88856 0.92561 0.88981 0.90477 0.91987 0.93363 0.93551 0.91275 0.89982 0.90666 0.89070 0.69718 0.95341 0.95674 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 71.98 0.66 -0.93 16 2 C -0.09 -1.21 2.39 -10.76 -0.03 -1.24 16 3 H 0.08 1.06 5.57 -2.39 -0.01 1.05 16 4 C -0.10 -2.25 4.27 30.45 0.13 -2.12 16 5 C 0.14 3.95 0.83 2.58 0.00 3.96 16 6 C -0.10 -2.39 3.79 30.45 0.12 -2.27 16 7 C -0.05 -0.82 0.77 -52.15 -0.04 -0.86 16 8 C -0.14 -1.76 8.33 71.98 0.60 -1.16 16 9 C -0.16 -2.44 7.05 71.98 0.51 -1.93 16 10 C -0.10 -1.15 4.00 30.59 0.12 -1.03 16 11 N -0.70 -21.01 4.30 -442.70 -1.90 -22.91 16 12 C 0.69 30.11 8.63 179.37 1.55 31.66 16 13 O -0.59 -30.04 17.48 -3.81 -0.07 -30.11 16 14 N -0.57 -27.44 2.59 -777.32 -2.02 -29.46 16 15 C 0.26 15.18 5.46 85.63 0.47 15.65 16 16 C -0.56 -33.73 9.39 25.60 0.24 -33.49 16 17 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 18 C 0.01 0.85 5.46 84.66 0.46 1.31 16 19 N -0.92 -56.45 13.29 21.45 0.28 -56.16 16 20 Si 0.98 45.82 29.54 68.60 2.03 47.85 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.52 21.41 6.95 87.77 0.61 22.02 16 25 O -0.50 -23.45 17.77 -2.90 -0.05 -23.50 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 0.71 8.11 -2.39 -0.02 0.69 16 34 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.93 6.98 -2.39 -0.02 0.91 16 37 H 0.07 0.94 3.72 -2.38 -0.01 0.93 16 38 H 0.08 0.92 7.85 -2.39 -0.02 0.91 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.45 10.53 4.72 -92.71 -0.44 10.09 16 42 H 0.03 1.74 8.01 -2.39 -0.02 1.72 16 43 H 0.03 1.56 7.86 -2.39 -0.02 1.54 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -75.85 341.25 4.24 -71.61 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.56 Total: 13.12 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 5.40 Total: 29.56 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -3.63 Total: -108.53 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.12 Total: -53.61 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.85 4.24 -71.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010023478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.338 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds