Wall clock time and date at job start Tue Mar 31 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99828 * 2 1 4 4 C 1.50699 * 109.47236 * 270.00126 * 3 2 1 5 5 H 1.08003 * 119.99757 * 359.72850 * 4 3 2 6 6 C 1.37875 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00104 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00010 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.46903 * 60.00267 * 8 6 4 10 10 H 1.48497 * 109.46979 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47310 * 300.00549 * 8 6 4 12 12 C 1.34771 * 119.99821 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99212 * 175.05557 * 12 2 1 14 14 C 1.50696 * 120.00390 * 355.05696 * 12 2 1 15 15 H 1.09004 * 110.85672 * 31.15626 * 14 12 2 16 16 C 1.54628 * 110.96913 * 267.32372 * 14 12 2 17 17 C 1.51277 * 104.19619 * 217.08424 * 16 14 12 18 18 O 1.21281 * 124.94086 * 196.25792 * 17 16 14 19 19 N 1.34422 * 110.11523 * 16.25241 * 17 16 14 20 20 C 1.46504 * 124.34434 * 180.39024 * 19 17 16 21 21 C 1.54264 * 110.03501 * 57.19141 * 20 19 17 22 22 C 1.54892 * 104.19112 * 217.10225 * 21 20 19 23 23 C 1.54884 * 102.75227 * 37.94326 * 22 21 20 24 24 C 1.53871 * 110.03220 * 300.01775 * 20 19 17 25 25 C 1.46764 * 111.30087 * 0.40771 * 19 17 16 26 26 H 1.09001 * 109.47300 * 95.21864 * 1 2 3 27 27 H 1.09001 * 109.47097 * 215.22590 * 1 2 3 28 28 H 1.09002 * 109.47436 * 335.22343 * 1 2 3 29 29 H 1.08998 * 109.47317 * 150.00013 * 3 2 1 30 30 H 1.09003 * 109.47324 * 29.99757 * 3 2 1 31 31 H 0.96997 * 119.99719 * 179.97438 * 7 6 4 32 32 H 1.08996 * 110.48646 * 335.76327 * 16 14 12 33 33 H 1.09006 * 110.48346 * 98.40538 * 16 14 12 34 34 H 1.09005 * 110.01333 * 178.63237 * 20 19 17 35 35 H 1.08994 * 110.48705 * 335.77624 * 21 20 19 36 36 H 1.08995 * 110.48448 * 98.42785 * 21 20 19 37 37 H 1.09002 * 110.75700 * 279.62426 * 22 21 20 38 38 H 1.09008 * 110.91131 * 156.33182 * 22 21 20 39 39 H 1.08994 * 110.48879 * 203.38101 * 23 22 21 40 40 H 1.08999 * 110.49053 * 80.72928 * 23 22 21 41 41 H 1.08995 * 110.03648 * 238.57325 * 24 20 19 42 42 H 1.09002 * 110.03496 * 0.02562 * 24 20 19 43 43 H 1.09004 * 110.24268 * 223.98455 * 25 19 17 44 44 H 1.09000 * 110.31444 * 102.02408 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.1015 1.0938 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.1405 3.5937 -4.1346 10 1 4.1802 4.7031 -3.4339 11 1 4.2412 2.3822 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3483 -1.1690 -0.0900 14 6 1.3896 -2.4698 0.1136 15 1 0.4038 -2.3915 -0.3450 16 6 1.2804 -2.9191 1.5891 17 6 1.4235 -4.4239 1.5302 18 8 1.1210 -5.1859 2.4240 19 7 1.9345 -4.7937 0.3431 20 6 2.1945 -6.1812 -0.0487 21 6 0.8966 -7.0095 0.0471 22 6 1.3660 -8.3926 0.5627 23 6 2.4767 -8.0207 1.5761 24 6 3.1991 -6.8240 0.9234 25 6 2.1988 -3.6288 -0.5096 26 1 -0.3634 -0.0935 -1.0234 27 1 -0.3633 -0.8395 0.5928 28 1 -0.3634 0.9331 0.4307 29 1 3.1499 1.1385 0.5138 30 1 1.6084 2.0284 0.5138 31 1 4.0300 4.4441 -0.8504 32 1 2.0844 -2.4823 2.1813 33 1 0.3093 -2.6440 2.0007 34 1 2.5853 -6.2146 -1.0658 35 1 0.2044 -6.5534 0.7548 36 1 0.4322 -7.1057 -0.9343 37 1 1.7718 -8.9914 -0.2527 38 1 0.5511 -8.9199 1.0589 39 1 3.1653 -8.8548 1.7106 40 1 2.0397 -7.7278 2.5308 41 1 4.0771 -7.1702 0.3782 42 1 3.4929 -6.1039 1.6870 43 1 1.8592 -3.8215 -1.5273 44 1 3.2625 -3.3908 -0.5061 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057814271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:46 Heat of formation + Delta-G solvation = -94.512880 kcal Electronic energy + Delta-G solvation = -24314.501240 eV Core-core repulsion = 20844.509504 eV Total energy + Delta-G solvation = -3469.991736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03297 -40.43091 -38.36059 -37.22763 -36.54081 -34.73546 -33.11141 -29.99409 -29.64476 -28.70110 -28.40782 -27.29371 -25.45529 -23.21397 -22.51129 -21.56769 -19.90121 -19.77011 -18.73071 -18.42501 -17.82291 -17.12155 -16.98086 -16.39894 -16.13172 -15.87356 -15.82103 -15.22468 -14.78295 -14.61845 -14.47570 -14.22632 -14.11830 -13.92524 -13.66727 -13.45163 -13.11162 -12.81897 -12.75730 -12.58695 -12.54782 -12.38937 -12.20531 -12.15783 -12.03864 -11.93477 -11.83368 -11.71072 -11.46293 -10.89409 -10.62027 -10.51483 -9.67743 -9.42604 -8.20606 -6.35043 1.38863 1.42811 1.48860 1.50227 1.67537 1.96049 2.29279 2.44864 3.09336 3.21044 3.43039 3.65931 3.67681 3.71880 3.84838 4.01603 4.12149 4.39089 4.42406 4.47752 4.50072 4.56909 4.58801 4.61900 4.72969 4.78358 4.79662 4.89003 4.90102 4.99996 5.02989 5.06367 5.07983 5.21842 5.23180 5.27096 5.48137 5.57614 5.70446 5.83963 6.07382 6.07867 6.69911 6.78037 7.12640 7.28824 7.44673 8.86238 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030639 B = 0.003272 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.643458 B = 8555.845603 C = 8875.548206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.605 5.605 3 C 0.259 3.741 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.511 3.489 13 O -0.588 6.588 14 C -0.108 4.108 15 H 0.144 0.856 16 C -0.136 4.136 17 C 0.520 3.480 18 O -0.557 6.557 19 N -0.607 5.607 20 C 0.144 3.856 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.134 4.134 25 C 0.117 3.883 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.072 0.928 29 H -0.003 1.003 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 -20.647 -0.633 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.298 3.702 13 O -0.469 6.469 14 C -0.129 4.129 15 H 0.162 0.838 16 C -0.176 4.176 17 C 0.308 3.692 18 O -0.436 6.436 19 N -0.339 5.339 20 C 0.043 3.957 21 C -0.169 4.169 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.172 4.172 25 C -0.007 4.007 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.128 0.872 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.260 -20.918 -0.207 22.490 hybrid contribution 0.696 1.089 -0.442 1.366 sum -7.564 -19.829 -0.649 21.232 Atomic orbital electron populations 1.22000 0.77682 1.04113 1.02804 1.48132 1.08498 1.06205 1.70673 1.18805 0.91091 0.80297 0.96043 1.21691 1.36762 1.06343 0.93158 0.92573 1.25858 0.94987 0.96538 1.01856 1.70043 1.39016 1.14856 1.33102 0.85487 0.78839 0.77290 0.79324 1.18421 1.20670 1.20196 1.20646 0.87398 0.85852 0.76284 1.90665 1.16662 1.87665 1.51902 1.22202 1.01920 0.91056 0.97740 0.83829 1.22280 1.06617 0.92844 0.95870 1.20849 0.75981 0.90729 0.81656 1.90680 1.52478 1.59343 1.41088 1.48541 1.62347 1.07035 1.15994 1.21968 0.96015 0.78134 0.99604 1.22697 0.96430 0.95737 1.02016 1.22412 0.98004 0.96020 0.98737 1.22263 0.97894 0.97085 0.98436 1.22508 0.98653 0.97744 0.98305 1.22048 1.00479 0.82749 0.95375 0.91723 0.88355 0.90953 0.98468 0.95633 0.92467 0.88994 0.84946 0.86669 0.92627 0.89460 0.89430 0.91230 0.90480 0.93510 0.89631 0.94128 0.87179 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 9.88 127.77 1.26 3.26 16 2 N -0.60 -23.71 2.86 -851.13 -2.43 -26.15 16 3 C 0.26 13.45 5.16 85.63 0.44 13.90 16 4 C -0.54 -30.26 9.39 25.60 0.24 -30.02 16 5 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.51 19.25 6.75 87.66 0.59 19.84 16 13 O -0.59 -28.49 15.31 -3.04 -0.05 -28.54 16 14 C -0.11 -2.65 2.58 -10.48 -0.03 -2.67 16 15 H 0.14 2.53 6.68 -2.38 -0.02 2.51 16 16 C -0.14 -3.27 6.32 30.59 0.19 -3.07 16 17 C 0.52 13.95 6.85 87.90 0.60 14.55 16 18 O -0.56 -17.97 15.92 -3.03 -0.05 -18.02 16 19 N -0.61 -13.96 2.83 -790.01 -2.23 -16.20 16 20 C 0.14 2.74 3.55 45.71 0.16 2.91 16 21 C -0.13 -2.26 6.29 31.67 0.20 -2.06 16 22 C -0.11 -1.72 6.91 31.88 0.22 -1.50 16 23 C -0.12 -2.23 6.83 31.67 0.22 -2.02 16 24 C -0.13 -2.73 6.02 31.32 0.19 -2.54 16 25 C 0.12 2.73 6.82 86.83 0.59 3.32 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.10 1.75 6.51 -2.39 -0.02 1.73 16 28 H 0.07 1.92 7.83 -2.39 -0.02 1.90 16 29 H 0.00 -0.17 7.50 -2.39 -0.02 -0.19 16 30 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.09 2.58 7.89 -2.39 -0.02 2.56 16 33 H 0.13 2.46 8.09 -2.38 -0.02 2.44 16 34 H 0.12 1.67 8.09 -2.38 -0.02 1.65 16 35 H 0.05 1.26 6.45 -2.39 -0.02 1.25 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.07 7.37 -2.39 -0.02 1.05 16 43 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.07 2.03 6.89 -2.39 -0.02 2.01 16 Total: -1.00 -75.53 352.20 3.88 -71.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.98 Total: 11.87 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.35 Total: 14.72 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.38 Total: -97.64 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.09 Total: -46.55 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -75.53 3.88 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.862 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds