Wall clock time and date at job start Tue Mar 31 2020 03:36:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09004 * 109.47256 * 2 1
4 4 C 1.53002 * 109.47564 * 120.00197 * 2 1 3
5 5 N 1.46500 * 109.47148 * 184.99803 * 4 2 1
6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2
7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4
8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5
9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6
10 10 N 1.46903 * 109.47232 * 240.00359 * 2 1 3
11 11 C 1.46900 * 111.00236 * 84.99392 * 10 2 1
12 12 H 1.09009 * 109.47157 * 325.00591 * 11 10 2
13 13 C 1.52999 * 109.46916 * 85.00461 * 11 10 2
14 14 C 1.50698 * 109.47458 * 205.00634 * 11 10 2
15 15 O 1.21283 * 119.99832 * 359.97438 * 14 11 10
16 16 N 1.34778 * 120.00001 * 180.02562 * 14 11 10
17 17 C 1.46500 * 120.00058 * 359.97438 * 16 14 11
18 18 C 1.46496 * 119.99875 * 179.97438 * 16 14 11
19 19 C 1.50710 * 109.46899 * 90.00126 * 18 16 14
20 20 H 1.07996 * 119.99844 * 359.97438 * 19 18 16
21 21 C 1.37880 * 119.99622 * 180.02562 * 19 18 16
22 22 N 1.31507 * 120.00192 * 359.97438 * 21 19 18
23 23 Si 1.86804 * 119.99485 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.46833 * 59.99976 * 23 21 19
25 25 H 1.48500 * 109.46981 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47468 * 300.00449 * 23 21 19
27 27 H 1.09001 * 109.47561 * 59.99749 * 1 2 3
28 28 H 1.09004 * 109.47256 * 179.97438 * 1 2 3
29 29 H 1.09005 * 109.46870 * 299.99369 * 1 2 3
30 30 H 1.08996 * 109.46833 * 64.99795 * 4 2 1
31 31 H 1.08993 * 109.46978 * 305.00271 * 4 2 1
32 32 H 1.07999 * 126.12479 * 0.04451 * 6 5 4
33 33 H 1.07999 * 126.03957 * 180.26092 * 7 6 5
34 34 H 1.08004 * 125.89587 * 180.02562 * 8 7 6
35 35 H 1.00892 * 111.00574 * 208.95226 * 10 2 1
36 36 H 1.08992 * 109.47224 * 59.99884 * 13 11 10
37 37 H 1.08999 * 109.47027 * 180.02562 * 13 11 10
38 38 H 1.09001 * 109.47096 * 299.99780 * 13 11 10
39 39 H 1.08994 * 109.47446 * 90.00167 * 17 16 14
40 40 H 1.08998 * 109.46894 * 210.00206 * 17 16 14
41 41 H 1.09003 * 109.46848 * 329.99625 * 17 16 14
42 42 H 1.09000 * 109.47695 * 209.99855 * 18 16 14
43 43 H 1.09003 * 109.47635 * 330.00640 * 18 16 14
44 44 H 0.97008 * 119.99582 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5001 -0.6179 1.3108
6 6 4.2186 -0.1314 2.3443
7 6 5.5273 -0.2077 2.0089
8 6 5.6114 -0.7592 0.7262
9 7 4.3969 -1.0047 0.3065
10 7 2.0196 -0.6924 -1.1995
11 6 2.0823 0.2227 -2.3470
12 1 1.2574 0.9330 -2.2907
13 6 3.4109 0.9809 -2.3225
14 6 1.9783 -0.5675 -3.6260
15 8 1.8638 -1.7742 -3.5856
16 7 2.0137 0.0667 -4.8147
17 6 2.1526 1.5243 -4.8634
18 6 1.9132 -0.7015 -6.0580
19 6 0.4646 -0.8291 -6.4539
20 1 -0.3041 -0.3829 -5.8405
21 6 0.1209 -1.5163 -7.5987
22 7 1.0570 -2.0599 -8.3454
23 14 -1.6747 -1.6750 -8.0891
24 1 -2.2529 -0.3228 -8.2950
25 1 -1.7766 -2.4536 -9.3495
26 1 -2.4218 -2.3742 -7.0129
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8901
30 1 1.7517 -1.7715 1.2055
31 1 1.6054 -0.2619 2.1369
32 1 3.8205 0.2502 3.2728
33 1 6.3600 0.0992 2.6245
34 1 6.5218 -0.9496 0.1772
35 1 2.9172 -1.1204 -1.0289
36 1 4.2357 0.2707 -2.3787
37 1 3.4573 1.6603 -3.1736
38 1 3.4861 1.5525 -1.3974
39 1 3.2097 1.7877 -4.8975
40 1 1.6539 1.9072 -5.7537
41 1 1.6974 1.9625 -3.9752
42 1 2.4617 -0.1881 -6.8477
43 1 2.3373 -1.6942 -5.9071
44 1 0.8151 -2.5431 -9.1511
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000071879141.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:55
Heat of formation + Delta-G solvation = 61.330843 kcal
Electronic energy + Delta-G solvation = -24392.359147 eV
Core-core repulsion = 20961.418053 eV
Total energy + Delta-G solvation = -3430.941094 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.35486 -39.23583 -37.09669 -34.65858 -33.77551 -32.49966 -31.37145 -30.18781
-28.50906 -27.22897 -26.51163 -25.91944 -23.94000 -22.21431 -21.26102 -21.08687
-20.51294 -18.35898 -17.44645 -16.74618 -16.36662 -15.82234 -15.50532 -14.85471
-14.72733 -14.41886 -14.15140 -14.07509 -13.67603 -13.37013 -13.06143 -12.98079
-12.83355 -12.39630 -12.23016 -12.13624 -12.00262 -11.81763 -11.73604 -11.49220
-11.21189 -11.12651 -11.00667 -10.80030 -10.59151 -10.47900 -10.07949 -9.58510
-9.54942 -8.79021 -8.71612 -8.36174 -8.05081 -7.48828 -5.96743 -4.01113
1.72544 2.31541 2.69460 3.36415 3.40642 3.43915 3.64568 3.82104
4.20939 4.41134 4.52721 4.59516 4.77556 4.91755 4.94909 5.11126
5.24330 5.32077 5.35494 5.38172 5.39008 5.46234 5.54142 5.57422
5.71639 5.79368 5.81864 5.88119 5.92841 6.00860 6.17365 6.22200
6.35546 6.46262 6.81184 7.02576 7.25856 7.50284 7.55296 7.67864
7.86562 8.00830 8.32747 8.58328 8.99798 9.31117 9.63974 11.11208
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.025012 B = 0.003566 C = 0.003391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.186437 B = 7849.086115 C = 8255.886218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.075 3.925
3 H 0.046 0.954
4 C 0.127 3.873
5 N -0.372 5.372
6 C 0.052 3.948
7 C -0.277 4.277
8 C 0.047 3.953
9 N -0.291 5.291
10 N -0.664 5.664
11 C 0.072 3.928
12 H 0.091 0.909
13 C -0.182 4.182
14 C 0.511 3.489
15 O -0.520 6.520
16 N -0.607 5.607
17 C 0.084 3.916
18 C 0.247 3.753
19 C -0.524 4.524
20 H 0.056 0.944
21 C 0.060 3.940
22 N -0.896 5.896
23 Si 0.898 3.102
24 H -0.278 1.278
25 H -0.287 1.287
26 H -0.276 1.276
27 H 0.063 0.937
28 H 0.069 0.931
29 H 0.055 0.945
30 H 0.097 0.903
31 H 0.102 0.898
32 H 0.171 0.829
33 H 0.145 0.855
34 H 0.182 0.818
35 H 0.369 0.631
36 H 0.062 0.938
37 H 0.076 0.924
38 H 0.050 0.950
39 H 0.045 0.955
40 H 0.071 0.929
41 H 0.054 0.946
42 H 0.030 0.970
43 H 0.043 0.957
44 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.930 9.668 22.262 24.984
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.036 4.036
3 H 0.064 0.936
4 C 0.005 3.995
5 N -0.155 5.155
6 C -0.095 4.095
7 C -0.306 4.306
8 C -0.139 4.139
9 N -0.112 5.112
10 N -0.303 5.303
11 C -0.042 4.042
12 H 0.108 0.892
13 C -0.241 4.241
14 C 0.296 3.704
15 O -0.395 6.395
16 N -0.341 5.341
17 C -0.060 4.060
18 C 0.128 3.872
19 C -0.563 4.563
20 H 0.074 0.926
21 C -0.142 4.142
22 N -0.535 5.535
23 Si 0.725 3.275
24 H -0.203 1.203
25 H -0.212 1.212
26 H -0.202 1.202
27 H 0.082 0.918
28 H 0.088 0.912
29 H 0.074 0.926
30 H 0.115 0.885
31 H 0.121 0.879
32 H 0.189 0.811
33 H 0.163 0.837
34 H 0.199 0.801
35 H 0.197 0.803
36 H 0.081 0.919
37 H 0.095 0.905
38 H 0.069 0.931
39 H 0.063 0.937
40 H 0.090 0.910
41 H 0.073 0.927
42 H 0.048 0.952
43 H 0.061 0.939
44 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 4.432 8.151 20.979 22.939
hybrid contribution 0.275 0.930 0.589 1.135
sum 4.708 9.081 21.568 23.871
Atomic orbital electron populations
1.21802 0.93309 1.03259 1.01619 1.21772 0.96476 0.95970 0.89395
0.93612 1.22124 0.73829 1.03743 0.99771 1.48882 1.06618 1.47764
1.12188 1.22565 0.92543 1.00157 0.94208 1.21495 0.96263 1.13929
0.98931 1.23917 0.95909 0.98596 0.95450 1.77012 0.99578 1.22575
1.12080 1.60412 1.37181 1.30895 1.01835 1.21438 0.97815 0.93570
0.91390 0.89151 1.22604 0.97906 1.01254 1.02323 1.20130 0.77740
0.88308 0.84193 1.90655 1.48035 1.14224 1.86561 1.48114 1.71756
1.06530 1.07657 1.21731 0.99770 0.82314 1.02176 1.19233 0.97001
0.92084 0.78869 1.21425 0.92554 1.34436 1.07890 0.92587 1.24936
0.97624 0.95269 0.96321 1.69928 1.32466 1.35800 1.15332 0.86568
0.85108 0.78052 0.77733 1.20329 1.21220 1.20175 0.91788 0.91237
0.92613 0.88494 0.87940 0.81144 0.83683 0.80082 0.80318 0.91870
0.90510 0.93093 0.93714 0.91010 0.92686 0.95194 0.93925 0.92744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 9.40 37.15 0.35 -1.15 16
2 C 0.08 0.87 2.67 -67.71 -0.18 0.69 16
3 H 0.05 0.52 7.11 -51.93 -0.37 0.15 16
4 C 0.13 1.18 6.08 -4.04 -0.02 1.16 16
5 N -0.37 -4.00 3.68 -61.37 -0.23 -4.22 16
6 C 0.05 0.44 11.45 -17.22 -0.20 0.24 16
7 C -0.28 -2.45 10.80 -40.01 -0.43 -2.88 16
8 C 0.05 0.51 12.03 -17.37 -0.21 0.30 16
9 N -0.29 -3.83 9.82 30.63 0.30 -3.53 16
10 N -0.66 -10.71 5.54 -100.95 -0.56 -11.27 16
11 C 0.07 1.20 2.00 -68.87 -0.14 1.06 16
12 H 0.09 1.39 6.37 -51.92 -0.33 1.06 16
13 C -0.18 -2.57 8.78 37.16 0.33 -2.24 16
14 C 0.51 11.49 7.15 -10.99 -0.08 11.41 16
15 O -0.52 -14.21 16.01 5.55 0.09 -14.12 16
16 N -0.61 -13.58 2.86 -182.95 -0.52 -14.10 16
17 C 0.08 1.41 8.80 59.85 0.53 1.93 16
18 C 0.25 6.77 5.16 -5.19 -0.03 6.74 16
19 C -0.52 -15.42 9.39 -34.43 -0.32 -15.75 16
20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16
21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
22 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16
23 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16
24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16
27 H 0.06 0.77 7.43 -51.93 -0.39 0.38 16
28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
31 H 0.10 0.57 8.07 -51.93 -0.42 0.16 16
32 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16
33 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16
34 H 0.18 1.51 8.06 -52.48 -0.42 1.08 16
35 H 0.37 6.27 5.15 -39.30 -0.20 6.06 16
36 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16
37 H 0.08 1.00 4.53 -51.93 -0.24 0.77 16
38 H 0.05 0.64 7.43 -51.93 -0.39 0.26 16
39 H 0.04 0.65 6.95 -51.93 -0.36 0.29 16
40 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16
41 H 0.05 0.77 6.01 -51.93 -0.31 0.46 16
42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16
43 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16
44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
LS Contribution 356.69 15.07 5.38 5.38
Total: -1.00 -36.65 356.69 -7.06 -43.71
By element:
Atomic # 1 Polarization: 10.92 SS G_CDS: -6.73 Total: 4.19 kcal
Atomic # 6 Polarization: 3.69 SS G_CDS: -0.51 Total: 3.19 kcal
Atomic # 7 Polarization: -59.52 SS G_CDS: -0.27 Total: -59.79 kcal
Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -36.65 -7.06 -43.71 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071879141.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.045 kcal
(2) G-P(sol) polarization free energy of solvation -36.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds