Wall clock time and date at job start Tue Mar 31 2020 03:36:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09004 * 109.47256 * 2 1
4 4 C 1.53002 * 109.47564 * 120.00197 * 2 1 3
5 5 N 1.46500 * 109.47148 * 184.99803 * 4 2 1
6 6 C 1.34946 * 126.03644 * 124.95038 * 5 4 2
7 7 C 1.35316 * 107.74870 * 180.02562 * 6 5 4
8 8 C 1.39875 * 107.91722 * 0.02562 * 7 6 5
9 9 N 1.30829 * 108.20298 * 0.02562 * 8 7 6
10 10 N 1.46903 * 109.47232 * 240.00359 * 2 1 3
11 11 C 1.46900 * 111.00236 * 84.99392 * 10 2 1
12 12 H 1.09009 * 109.47157 * 325.00591 * 11 10 2
13 13 C 1.52999 * 109.46916 * 85.00461 * 11 10 2
14 14 C 1.50698 * 109.47458 * 205.00634 * 11 10 2
15 15 O 1.21283 * 119.99832 * 359.97438 * 14 11 10
16 16 N 1.34778 * 120.00001 * 180.02562 * 14 11 10
17 17 C 1.46500 * 120.00058 * 359.97438 * 16 14 11
18 18 C 1.46496 * 119.99875 * 179.97438 * 16 14 11
19 19 C 1.50710 * 109.46899 * 90.00126 * 18 16 14
20 20 H 1.07996 * 119.99844 * 359.97438 * 19 18 16
21 21 C 1.37880 * 119.99622 * 180.02562 * 19 18 16
22 22 N 1.31507 * 120.00192 * 359.97438 * 21 19 18
23 23 Si 1.86804 * 119.99485 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.46833 * 59.99976 * 23 21 19
25 25 H 1.48500 * 109.46981 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.47468 * 300.00449 * 23 21 19
27 27 H 1.09001 * 109.47561 * 59.99749 * 1 2 3
28 28 H 1.09004 * 109.47256 * 179.97438 * 1 2 3
29 29 H 1.09005 * 109.46870 * 299.99369 * 1 2 3
30 30 H 1.08996 * 109.46833 * 64.99795 * 4 2 1
31 31 H 1.08993 * 109.46978 * 305.00271 * 4 2 1
32 32 H 1.07999 * 126.12479 * 0.04451 * 6 5 4
33 33 H 1.07999 * 126.03957 * 180.26092 * 7 6 5
34 34 H 1.08004 * 125.89587 * 180.02562 * 8 7 6
35 35 H 1.00892 * 111.00574 * 208.95226 * 10 2 1
36 36 H 1.08992 * 109.47224 * 59.99884 * 13 11 10
37 37 H 1.08999 * 109.47027 * 180.02562 * 13 11 10
38 38 H 1.09001 * 109.47096 * 299.99780 * 13 11 10
39 39 H 1.08994 * 109.47446 * 90.00167 * 17 16 14
40 40 H 1.08998 * 109.46894 * 210.00206 * 17 16 14
41 41 H 1.09003 * 109.46848 * 329.99625 * 17 16 14
42 42 H 1.09000 * 109.47695 * 209.99855 * 18 16 14
43 43 H 1.09003 * 109.47635 * 330.00640 * 18 16 14
44 44 H 0.97008 * 119.99582 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5001 -0.6179 1.3108
6 6 4.2186 -0.1314 2.3443
7 6 5.5273 -0.2077 2.0089
8 6 5.6114 -0.7592 0.7262
9 7 4.3969 -1.0047 0.3065
10 7 2.0196 -0.6924 -1.1995
11 6 2.0823 0.2227 -2.3470
12 1 1.2574 0.9330 -2.2907
13 6 3.4109 0.9809 -2.3225
14 6 1.9783 -0.5675 -3.6260
15 8 1.8638 -1.7742 -3.5856
16 7 2.0137 0.0667 -4.8147
17 6 2.1526 1.5243 -4.8634
18 6 1.9132 -0.7015 -6.0580
19 6 0.4646 -0.8291 -6.4539
20 1 -0.3041 -0.3829 -5.8405
21 6 0.1209 -1.5163 -7.5987
22 7 1.0570 -2.0599 -8.3454
23 14 -1.6747 -1.6750 -8.0891
24 1 -2.2529 -0.3228 -8.2950
25 1 -1.7766 -2.4536 -9.3495
26 1 -2.4218 -2.3742 -7.0129
27 1 -0.3634 0.5139 -0.8899
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8901
30 1 1.7517 -1.7715 1.2055
31 1 1.6054 -0.2619 2.1369
32 1 3.8205 0.2502 3.2728
33 1 6.3600 0.0992 2.6245
34 1 6.5218 -0.9496 0.1772
35 1 2.9172 -1.1204 -1.0289
36 1 4.2357 0.2707 -2.3787
37 1 3.4573 1.6603 -3.1736
38 1 3.4861 1.5525 -1.3974
39 1 3.2097 1.7877 -4.8975
40 1 1.6539 1.9072 -5.7537
41 1 1.6974 1.9625 -3.9752
42 1 2.4617 -0.1881 -6.8477
43 1 2.3373 -1.6942 -5.9071
44 1 0.8151 -2.5431 -9.1511
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000071879141.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:55
Heat of formation + Delta-G solvation = 34.554651 kcal
Electronic energy + Delta-G solvation = -24393.520250 eV
Core-core repulsion = 20961.418053 eV
Total energy + Delta-G solvation = -3432.102197 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.06936 -40.85829 -38.25342 -36.55373 -35.09720 -34.38104 -32.35084 -30.87838
-30.09091 -28.79275 -27.56818 -27.20483 -25.73129 -23.77764 -22.12063 -21.89253
-21.36481 -19.99955 -18.70389 -18.20474 -17.92459 -17.31050 -16.85666 -16.49877
-16.06233 -15.58877 -15.48119 -15.00956 -14.71773 -14.64049 -14.41895 -14.20740
-13.87553 -13.63929 -13.55396 -13.33102 -13.32292 -13.11572 -13.00090 -12.83390
-12.76209 -12.56605 -12.49573 -12.29635 -12.16729 -12.09427 -11.72092 -11.39110
-10.64862 -10.46245 -10.34380 -9.46839 -9.41366 -9.22408 -8.22284 -6.37750
1.04737 1.34998 1.40414 1.47639 1.66056 1.91203 2.00506 2.27158
2.42522 3.06448 3.22825 3.53787 3.70706 3.95219 4.02300 4.06311
4.11427 4.17254 4.31701 4.35118 4.42634 4.57384 4.61488 4.69180
4.70493 4.77761 4.86689 4.93370 4.96106 4.99113 5.01592 5.15327
5.20045 5.22390 5.38060 5.56218 5.74388 5.84662 6.05553 6.07541
6.21846 6.58510 6.70459 6.83384 6.88828 7.28735 7.57212 8.84604
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.025012 B = 0.003566 C = 0.003391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1119.186437 B = 7849.086115 C = 8255.886218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.076 3.924
3 H 0.056 0.944
4 C 0.127 3.873
5 N -0.381 5.381
6 C 0.061 3.939
7 C -0.285 4.285
8 C 0.034 3.966
9 N -0.344 5.344
10 N -0.692 5.692
11 C 0.087 3.913
12 H 0.110 0.890
13 C -0.167 4.167
14 C 0.499 3.501
15 O -0.583 6.583
16 N -0.612 5.612
17 C 0.078 3.922
18 C 0.262 3.738
19 C -0.544 4.544
20 H 0.052 0.948
21 C 0.006 3.994
22 N -0.930 5.930
23 Si 0.970 3.030
24 H -0.258 1.258
25 H -0.277 1.277
26 H -0.279 1.279
27 H 0.046 0.954
28 H 0.051 0.949
29 H 0.094 0.906
30 H 0.081 0.919
31 H 0.150 0.850
32 H 0.213 0.787
33 H 0.167 0.833
34 H 0.191 0.809
35 H 0.363 0.637
36 H 0.042 0.958
37 H 0.089 0.911
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.067 0.933
41 H 0.090 0.910
42 H 0.023 0.977
43 H -0.008 1.008
44 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.904 12.320 24.686 28.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.035 4.035
3 H 0.074 0.926
4 C 0.007 3.993
5 N -0.163 5.163
6 C -0.086 4.086
7 C -0.314 4.314
8 C -0.151 4.151
9 N -0.167 5.167
10 N -0.331 5.331
11 C -0.026 4.026
12 H 0.128 0.872
13 C -0.226 4.226
14 C 0.287 3.713
15 O -0.463 6.463
16 N -0.345 5.345
17 C -0.064 4.064
18 C 0.140 3.860
19 C -0.582 4.582
20 H 0.070 0.930
21 C -0.193 4.193
22 N -0.569 5.569
23 Si 0.794 3.206
24 H -0.182 1.182
25 H -0.202 1.202
26 H -0.204 1.204
27 H 0.065 0.935
28 H 0.071 0.929
29 H 0.113 0.887
30 H 0.099 0.901
31 H 0.167 0.833
32 H 0.230 0.770
33 H 0.185 0.815
34 H 0.208 0.792
35 H 0.190 0.810
36 H 0.061 0.939
37 H 0.108 0.892
38 H 0.092 0.908
39 H 0.090 0.910
40 H 0.086 0.914
41 H 0.108 0.892
42 H 0.041 0.959
43 H 0.010 0.990
44 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 3.422 10.869 23.420 26.045
hybrid contribution 0.660 0.085 -0.117 0.676
sum 4.082 10.954 23.303 26.071
Atomic orbital electron populations
1.21798 0.92674 1.02490 1.02678 1.21889 0.96827 0.96244 0.88492
0.92585 1.22232 0.73580 1.03073 1.00463 1.48992 1.06843 1.48098
1.12400 1.23259 0.92221 0.98413 0.94658 1.21833 0.97480 1.13800
0.98337 1.24292 0.95793 0.98410 0.96620 1.76952 1.00822 1.24729
1.14189 1.60372 1.37168 1.32080 1.03470 1.21281 0.99863 0.92946
0.88556 0.87242 1.22473 0.95434 1.00667 1.03996 1.21339 0.75976
0.88145 0.85862 1.90609 1.50822 1.17216 1.87606 1.48143 1.71325
1.08786 1.06211 1.22055 1.01972 0.78626 1.03736 1.18706 0.95883
0.90423 0.80986 1.21686 0.93248 1.35018 1.08290 0.92954 1.25905
1.02695 0.94539 0.96163 1.70055 1.34897 1.36203 1.15768 0.85437
0.78882 0.78949 0.77348 1.18215 1.20180 1.20438 0.93493 0.92942
0.88710 0.90073 0.83270 0.77047 0.81533 0.79218 0.81032 0.93852
0.89203 0.90840 0.90983 0.91407 0.89196 0.95867 0.98950 0.92378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.64 9.40 71.98 0.68 -1.97 16
2 C 0.08 1.60 2.67 44.91 0.12 1.72 16
3 H 0.06 1.09 7.11 -2.38 -0.02 1.07 16
4 C 0.13 2.08 6.08 86.38 0.53 2.60 16
5 N -0.38 -7.43 3.68 -348.07 -1.28 -8.71 16
6 C 0.06 0.82 11.45 83.54 0.96 1.78 16
7 C -0.29 -4.42 10.80 21.99 0.24 -4.18 16
8 C 0.03 0.71 12.03 85.24 1.03 1.74 16
9 N -0.34 -9.02 9.82 -57.02 -0.56 -9.58 16
10 N -0.69 -22.33 5.54 -473.30 -2.62 -24.95 16
11 C 0.09 2.86 2.00 44.17 0.09 2.95 16
12 H 0.11 3.15 6.37 -2.38 -0.02 3.13 16
13 C -0.17 -4.44 8.78 71.98 0.63 -3.81 16
14 C 0.50 23.15 7.15 87.66 0.63 23.77 16
15 O -0.58 -33.89 16.01 -3.04 -0.05 -33.94 16
16 N -0.61 -28.02 2.86 -851.13 -2.43 -30.45 16
17 C 0.08 2.50 8.80 127.77 1.12 3.62 16
18 C 0.26 15.03 5.16 85.64 0.44 15.47 16
19 C -0.54 -32.94 9.39 25.60 0.24 -32.70 16
20 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16
21 C 0.01 0.34 5.46 84.66 0.46 0.81 16
22 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16
23 Si 0.97 46.47 29.54 68.60 2.03 48.49 16
24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16
25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16
26 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16
27 H 0.05 1.05 7.43 -2.39 -0.02 1.03 16
28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16
29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16
30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.15 0.98 8.07 -2.39 -0.02 0.96 16
32 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16
33 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16
34 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16
35 H 0.36 12.62 5.15 -89.70 -0.46 12.16 16
36 H 0.04 1.33 8.13 -2.39 -0.02 1.32 16
37 H 0.09 2.11 4.53 -2.39 -0.01 2.10 16
38 H 0.07 1.65 7.43 -2.39 -0.02 1.63 16
39 H 0.07 1.93 6.95 -2.39 -0.02 1.91 16
40 H 0.07 2.23 8.07 -2.39 -0.02 2.22 16
41 H 0.09 2.25 6.01 -2.39 -0.01 2.23 16
42 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16
43 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16
44 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16
Total: -1.00 -85.88 356.69 3.06 -82.83
By element:
Atomic # 1 Polarization: 22.06 SS G_CDS: 0.53 Total: 22.59 kcal
Atomic # 6 Polarization: 4.65 SS G_CDS: 7.16 Total: 11.80 kcal
Atomic # 7 Polarization: -125.17 SS G_CDS: -6.61 Total: -131.78 kcal
Atomic # 8 Polarization: -33.89 SS G_CDS: -0.05 Total: -33.94 kcal
Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal
Total: -85.88 3.06 -82.83 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000071879141.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.380 kcal
(2) G-P(sol) polarization free energy of solvation -85.881 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.825 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds