Wall clock time and date at job start Tue Mar 31 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31132 * 126.55648 * 2 1 4 4 C 1.34496 * 105.61604 * 180.12199 * 3 2 1 5 5 C 1.50698 * 126.28433 * 179.90654 * 4 3 2 6 6 N 1.46903 * 109.46759 * 269.71126 * 5 4 3 7 7 C 1.48061 * 111.00243 * 317.68872 * 6 5 4 8 8 C 1.53699 * 112.47205 * 192.20206 * 7 6 5 9 9 C 1.50798 * 112.09760 * 318.55251 * 8 7 6 10 10 N 1.47912 * 108.50095 * 92.55133 * 9 8 7 11 11 C 1.46899 * 111.00136 * 153.78926 * 10 9 8 12 12 H 1.08995 * 109.47060 * 67.96803 * 11 10 9 13 13 C 1.53000 * 109.47023 * 187.96957 * 11 10 9 14 14 C 1.50703 * 109.47134 * 307.97069 * 11 10 9 15 15 H 1.08003 * 119.99928 * 354.24682 * 14 11 10 16 16 C 1.37879 * 120.00141 * 174.25613 * 14 11 10 17 17 N 1.31509 * 120.00158 * 153.27660 * 16 14 11 18 18 Si 1.86799 * 119.99722 * 332.99777 * 16 14 11 19 19 H 1.48504 * 109.46984 * 180.28063 * 18 16 14 20 20 H 1.48501 * 109.47274 * 300.27665 * 18 16 14 21 21 H 1.48501 * 109.47392 * 60.27583 * 18 16 14 22 22 C 1.40015 * 114.06533 * 280.07750 * 10 9 8 23 23 C 1.44582 * 110.99615 * 190.00058 * 6 5 4 24 24 N 1.29943 * 107.42387 * 359.64251 * 4 3 2 25 25 O 1.21299 * 110.25214 * 0.22616 * 24 4 3 26 26 H 1.09005 * 109.47352 * 180.24799 * 1 2 3 27 27 H 1.08998 * 109.47016 * 300.24827 * 1 2 3 28 28 H 1.09005 * 109.46894 * 60.25016 * 1 2 3 29 29 H 1.09002 * 109.47229 * 149.71457 * 5 4 3 30 30 H 1.09002 * 109.47371 * 29.70792 * 5 4 3 31 31 H 1.09004 * 108.88336 * 312.96912 * 7 6 5 32 32 H 1.08994 * 108.88071 * 71.52523 * 7 6 5 33 33 H 1.08997 * 108.95388 * 79.22746 * 8 7 6 34 34 H 1.08996 * 108.95495 * 197.87773 * 8 7 6 35 35 H 1.09002 * 109.63395 * 332.84690 * 9 8 7 36 36 H 1.09005 * 109.63573 * 212.25408 * 9 8 7 37 37 H 1.08997 * 109.47204 * 291.20407 * 13 11 10 38 38 H 1.08994 * 109.47240 * 51.20947 * 13 11 10 39 39 H 1.09002 * 109.47081 * 171.20637 * 13 11 10 40 40 H 0.97003 * 120.00089 * 354.66764 * 17 16 14 41 41 H 1.08998 * 108.95796 * 182.47778 * 22 10 9 42 42 H 1.08999 * 108.95819 * 301.21801 * 22 10 9 43 43 H 1.08998 * 109.57065 * 100.53809 * 23 6 5 44 44 H 1.08993 * 109.57613 * 340.15911 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3885 -0.0059 6 7 5.2234 1.6473 -1.3919 7 6 5.0659 0.4352 -2.2275 8 6 5.7577 0.5693 -3.5935 9 6 5.5512 1.9333 -4.2024 10 7 6.6832 2.7998 -3.8078 11 6 6.8985 3.8665 -4.7946 12 1 6.0583 4.5603 -4.7688 13 6 8.1898 4.6165 -4.4611 14 6 7.0093 3.2628 -6.1709 15 1 7.0212 2.1894 -6.2904 16 6 7.0957 4.0806 -7.2776 17 7 7.6970 3.6528 -8.3661 18 14 6.3518 5.7935 -7.2333 19 1 6.5719 6.4627 -8.5407 20 1 4.8942 5.6935 -6.9678 21 1 6.9979 6.5862 -6.1565 22 6 6.5754 3.3265 -2.5150 23 6 6.5493 2.2219 -1.4393 24 7 3.4644 -0.7243 0.0035 25 8 2.3028 -1.0736 0.0051 26 1 -0.3634 -1.0277 0.0044 27 1 -0.3633 0.5177 0.8877 28 1 -0.3633 0.5100 -0.8923 29 1 5.5983 0.8392 0.5107 30 1 4.6347 2.3358 0.5036 31 1 5.4931 -0.4164 -1.6979 32 1 4.0034 0.2532 -2.3882 33 1 6.8264 0.3958 -3.4676 34 1 5.3555 -0.1850 -4.2697 35 1 4.6178 2.3606 -3.8359 36 1 5.5166 1.8481 -5.2886 37 1 8.0541 5.1813 -3.5388 38 1 9.0025 3.9016 -4.3333 39 1 8.4325 5.3010 -5.2739 40 1 8.1469 2.7934 -8.3658 41 1 7.4252 3.9829 -2.3281 42 1 5.6566 3.9087 -2.4453 43 1 7.2738 1.4480 -1.6929 44 1 6.7960 2.6517 -0.4686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:23 Heat of formation + Delta-G solvation = 95.480631 kcal Electronic energy + Delta-G solvation = -24601.637291 eV Core-core repulsion = 21172.177043 eV Total energy + Delta-G solvation = -3429.460248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.77399 -39.25766 -36.89749 -35.65357 -33.79910 -32.74783 -32.30111 -30.23208 -29.16654 -28.35022 -25.84528 -25.47410 -24.18935 -23.43107 -21.54548 -20.99074 -19.54711 -19.26254 -18.37275 -17.53602 -17.37535 -16.09632 -15.63210 -15.42658 -14.70193 -14.56811 -14.38589 -13.81712 -13.78209 -13.53329 -13.19018 -13.05173 -12.89922 -12.54813 -12.27844 -12.11206 -11.91723 -11.66191 -11.49285 -11.42042 -11.18752 -11.08576 -10.77338 -10.51228 -10.40948 -10.20677 -10.11797 -10.03681 -9.79816 -9.75068 -8.85020 -8.15441 -8.09494 -7.13034 -6.44056 -3.97137 0.95809 2.02260 2.62675 3.41156 3.43469 3.47998 3.64997 3.79348 3.98767 4.54536 4.66835 4.84544 4.85849 4.91947 5.03109 5.18312 5.22723 5.26718 5.31689 5.42735 5.52657 5.58521 5.62873 5.73788 5.79098 5.84600 6.05704 6.23687 6.27437 6.27944 6.50351 6.52943 6.67986 6.71019 6.86006 6.94584 7.05121 7.10584 7.26237 7.46681 7.99549 8.00505 8.17625 8.44190 8.68385 9.04254 9.65281 10.93390 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003640 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.763002 B = 7689.434753 C = 7968.624144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.172 3.828 3 N -0.469 5.469 4 C 0.183 3.817 5 C 0.150 3.850 6 N -0.541 5.541 7 C 0.069 3.931 8 C -0.116 4.116 9 C 0.074 3.926 10 N -0.543 5.543 11 C 0.197 3.803 12 H -0.012 1.012 13 C -0.138 4.138 14 C -0.601 4.601 15 H 0.066 0.934 16 C 0.040 3.960 17 N -0.896 5.896 18 Si 1.032 2.968 19 H -0.286 1.286 20 H -0.285 1.285 21 H -0.280 1.280 22 C 0.078 3.922 23 C 0.065 3.935 24 N -0.383 5.383 25 O 0.075 5.925 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.020 0.980 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.270 0.730 41 H 0.071 0.929 42 H 0.018 0.982 43 H 0.054 0.946 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 -6.757 18.809 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 N -0.204 5.204 4 C -0.090 4.090 5 C 0.021 3.979 6 N -0.268 5.268 7 C -0.058 4.058 8 C -0.154 4.154 9 C -0.053 4.053 10 N -0.268 5.268 11 C 0.091 3.909 12 H 0.006 0.994 13 C -0.196 4.196 14 C -0.638 4.638 15 H 0.084 0.916 16 C -0.167 4.167 17 N -0.528 5.528 18 Si 0.860 3.140 19 H -0.211 1.211 20 H -0.212 1.212 21 H -0.206 1.206 22 C -0.053 4.053 23 C -0.063 4.063 24 N -0.091 5.091 25 O 0.016 5.984 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.034 -5.449 17.699 21.557 hybrid contribution -0.054 -1.541 1.329 2.036 sum -11.088 -6.990 19.028 23.106 Atomic orbital electron populations 1.20374 0.80265 1.05471 1.05717 1.28884 0.98976 0.80772 0.96246 1.71907 1.00202 1.28660 1.19582 1.25668 0.95366 0.87957 1.00027 1.20448 0.87752 0.97796 0.91867 1.60919 1.28152 1.30737 1.06952 1.22421 0.99781 0.89315 0.94302 1.21491 1.01118 0.98950 0.93881 1.21679 0.91067 0.91084 1.01513 1.59166 1.41943 1.24284 1.01376 1.19452 0.91877 0.88260 0.91354 0.99449 1.22150 1.00228 0.99096 0.98116 1.21889 1.56843 0.94963 0.90122 0.91623 1.25582 0.94400 1.03989 0.92729 1.70845 1.28988 1.21510 1.31492 0.84187 0.77100 0.76738 0.75970 1.21145 1.21189 1.20621 1.20940 0.99702 0.94843 0.89864 1.22042 0.87545 0.97814 0.98945 1.74680 0.97381 1.15812 1.21218 1.85286 1.11499 1.35887 1.65742 0.88598 0.87939 0.87785 0.92245 0.87719 0.95028 0.92721 0.91044 0.91888 0.95137 0.88728 0.96144 0.93097 0.93072 0.92020 0.91124 0.96368 0.92744 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.17 1.72 8.51 -13.06 -0.11 1.60 16 3 N -0.47 -6.15 11.55 -9.87 -0.11 -6.27 16 4 C 0.18 2.49 5.94 -156.38 -0.93 1.56 16 5 C 0.15 1.92 5.59 -4.98 -0.03 1.89 16 6 N -0.54 -8.19 4.10 -235.75 -0.97 -9.16 16 7 C 0.07 1.08 4.29 -2.82 -0.01 1.07 16 8 C -0.12 -2.03 5.36 -27.47 -0.15 -2.17 16 9 C 0.07 1.52 5.06 -4.37 -0.02 1.50 16 10 N -0.54 -11.57 3.97 -233.14 -0.93 -12.49 16 11 C 0.20 4.78 1.71 -68.86 -0.12 4.66 16 12 H -0.01 -0.30 6.68 -51.93 -0.35 -0.65 16 13 C -0.14 -3.10 8.42 37.16 0.31 -2.79 16 14 C -0.60 -16.68 7.57 -34.44 -0.26 -16.94 16 15 H 0.07 1.97 6.91 -52.48 -0.36 1.60 16 16 C 0.04 1.13 5.10 -17.82 -0.09 1.04 16 17 N -0.90 -27.19 13.69 55.43 0.76 -26.44 16 18 Si 1.03 25.33 26.58 -169.99 -4.52 20.81 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.47 6.50 56.52 0.37 -6.10 16 22 C 0.08 1.41 4.89 -6.75 -0.03 1.37 16 23 C 0.06 0.97 5.41 -4.44 -0.02 0.95 16 24 N -0.38 -5.22 11.52 30.90 0.36 -4.86 16 25 O 0.08 0.87 11.31 18.10 0.20 1.07 16 26 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.49 7.85 -51.93 -0.41 0.08 16 32 H 0.05 0.91 7.22 -51.93 -0.38 0.53 16 33 H 0.07 1.31 7.23 -51.93 -0.38 0.93 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 36 H 0.09 2.21 5.64 -51.93 -0.29 1.91 16 37 H 0.02 0.39 6.71 -51.93 -0.35 0.04 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 1.20 5.93 -51.93 -0.31 0.89 16 40 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16 41 H 0.07 1.24 5.87 -51.93 -0.30 0.94 16 42 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 43 H 0.05 0.86 6.93 -51.93 -0.36 0.50 16 44 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -32.17 337.70 -8.03 -40.21 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.83 Total: -1.84 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.08 Total: -6.13 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.89 Total: -59.21 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: 0.20 Total: 1.07 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.52 Total: 20.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.17 -8.03 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.687 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds