Wall clock time and date at job start Tue Mar 31 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31132 * 126.55648 * 2 1 4 4 C 1.34496 * 105.61604 * 180.12199 * 3 2 1 5 5 C 1.50698 * 126.28433 * 179.90654 * 4 3 2 6 6 N 1.46903 * 109.46759 * 269.71126 * 5 4 3 7 7 C 1.48061 * 111.00243 * 317.68872 * 6 5 4 8 8 C 1.53699 * 112.47205 * 192.20206 * 7 6 5 9 9 C 1.50798 * 112.09760 * 318.55251 * 8 7 6 10 10 N 1.47912 * 108.50095 * 92.55133 * 9 8 7 11 11 C 1.46899 * 111.00136 * 153.78926 * 10 9 8 12 12 H 1.08995 * 109.47060 * 67.96803 * 11 10 9 13 13 C 1.53000 * 109.47023 * 187.96957 * 11 10 9 14 14 C 1.50703 * 109.47134 * 307.97069 * 11 10 9 15 15 H 1.08003 * 119.99928 * 354.24682 * 14 11 10 16 16 C 1.37879 * 120.00141 * 174.25613 * 14 11 10 17 17 N 1.31509 * 120.00158 * 153.27660 * 16 14 11 18 18 Si 1.86799 * 119.99722 * 332.99777 * 16 14 11 19 19 H 1.48504 * 109.46984 * 180.28063 * 18 16 14 20 20 H 1.48501 * 109.47274 * 300.27665 * 18 16 14 21 21 H 1.48501 * 109.47392 * 60.27583 * 18 16 14 22 22 C 1.40015 * 114.06533 * 280.07750 * 10 9 8 23 23 C 1.44582 * 110.99615 * 190.00058 * 6 5 4 24 24 N 1.29943 * 107.42387 * 359.64251 * 4 3 2 25 25 O 1.21299 * 110.25214 * 0.22616 * 24 4 3 26 26 H 1.09005 * 109.47352 * 180.24799 * 1 2 3 27 27 H 1.08998 * 109.47016 * 300.24827 * 1 2 3 28 28 H 1.09005 * 109.46894 * 60.25016 * 1 2 3 29 29 H 1.09002 * 109.47229 * 149.71457 * 5 4 3 30 30 H 1.09002 * 109.47371 * 29.70792 * 5 4 3 31 31 H 1.09004 * 108.88336 * 312.96912 * 7 6 5 32 32 H 1.08994 * 108.88071 * 71.52523 * 7 6 5 33 33 H 1.08997 * 108.95388 * 79.22746 * 8 7 6 34 34 H 1.08996 * 108.95495 * 197.87773 * 8 7 6 35 35 H 1.09002 * 109.63395 * 332.84690 * 9 8 7 36 36 H 1.09005 * 109.63573 * 212.25408 * 9 8 7 37 37 H 1.08997 * 109.47204 * 291.20407 * 13 11 10 38 38 H 1.08994 * 109.47240 * 51.20947 * 13 11 10 39 39 H 1.09002 * 109.47081 * 171.20637 * 13 11 10 40 40 H 0.97003 * 120.00089 * 354.66764 * 17 16 14 41 41 H 1.08998 * 108.95796 * 182.47778 * 22 10 9 42 42 H 1.08999 * 108.95819 * 301.21801 * 22 10 9 43 43 H 1.08998 * 109.57065 * 100.53809 * 23 6 5 44 44 H 1.08993 * 109.57613 * 340.15911 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3885 -0.0059 6 7 5.2234 1.6473 -1.3919 7 6 5.0659 0.4352 -2.2275 8 6 5.7577 0.5693 -3.5935 9 6 5.5512 1.9333 -4.2024 10 7 6.6832 2.7998 -3.8078 11 6 6.8985 3.8665 -4.7946 12 1 6.0583 4.5603 -4.7688 13 6 8.1898 4.6165 -4.4611 14 6 7.0093 3.2628 -6.1709 15 1 7.0212 2.1894 -6.2904 16 6 7.0957 4.0806 -7.2776 17 7 7.6970 3.6528 -8.3661 18 14 6.3518 5.7935 -7.2333 19 1 6.5719 6.4627 -8.5407 20 1 4.8942 5.6935 -6.9678 21 1 6.9979 6.5862 -6.1565 22 6 6.5754 3.3265 -2.5150 23 6 6.5493 2.2219 -1.4393 24 7 3.4644 -0.7243 0.0035 25 8 2.3028 -1.0736 0.0051 26 1 -0.3634 -1.0277 0.0044 27 1 -0.3633 0.5177 0.8877 28 1 -0.3633 0.5100 -0.8923 29 1 5.5983 0.8392 0.5107 30 1 4.6347 2.3358 0.5036 31 1 5.4931 -0.4164 -1.6979 32 1 4.0034 0.2532 -2.3882 33 1 6.8264 0.3958 -3.4676 34 1 5.3555 -0.1850 -4.2697 35 1 4.6178 2.3606 -3.8359 36 1 5.5166 1.8481 -5.2886 37 1 8.0541 5.1813 -3.5388 38 1 9.0025 3.9016 -4.3333 39 1 8.4325 5.3010 -5.2739 40 1 8.1469 2.7934 -8.3658 41 1 7.4252 3.9829 -2.3281 42 1 5.6566 3.9087 -2.4453 43 1 7.2738 1.4480 -1.6929 44 1 6.7960 2.6517 -0.4686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075603220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:22 Heat of formation + Delta-G solvation = 70.222582 kcal Electronic energy + Delta-G solvation = -24602.732562 eV Core-core repulsion = 21172.177043 eV Total energy + Delta-G solvation = -3430.555519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.66804 -40.67837 -38.25667 -36.70838 -35.06858 -34.34463 -33.78262 -31.90648 -29.93877 -29.52771 -27.48182 -26.86168 -25.82752 -24.45960 -22.68564 -22.42524 -21.07383 -20.84653 -19.50821 -19.28918 -18.45142 -17.55088 -16.88068 -16.37513 -16.26084 -16.04886 -15.55878 -15.43668 -14.91988 -14.56284 -14.20718 -14.17890 -14.04670 -13.94084 -13.87270 -13.45108 -13.20133 -13.05365 -12.92322 -12.69267 -12.54671 -12.40067 -12.15556 -12.11206 -12.01022 -11.94668 -11.73437 -11.66100 -11.48592 -10.92966 -10.90173 -10.30687 -9.31764 -8.86603 -8.71727 -6.24723 0.12905 1.11046 1.46096 1.50996 1.71497 1.92421 2.49680 2.57723 2.78690 3.00501 3.01598 3.26538 3.78203 3.88339 3.98272 4.11300 4.21440 4.25089 4.33943 4.45574 4.50157 4.56189 4.61398 4.62527 4.63651 4.67907 4.71702 4.78556 4.88113 4.89265 4.93061 4.99315 5.08140 5.13125 5.22676 5.25911 5.28927 5.61408 5.87118 5.96417 6.04946 6.12463 6.33538 6.78677 6.97000 7.14236 7.45935 8.64116 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003640 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.763002 B = 7689.434753 C = 7968.624144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.185 3.815 3 N -0.503 5.503 4 C 0.170 3.830 5 C 0.152 3.848 6 N -0.554 5.554 7 C 0.086 3.914 8 C -0.107 4.107 9 C 0.083 3.917 10 N -0.548 5.548 11 C 0.196 3.804 12 H -0.018 1.018 13 C -0.131 4.131 14 C -0.598 4.598 15 H 0.029 0.971 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 1.072 2.928 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.252 1.252 22 C 0.073 3.927 23 C 0.074 3.926 24 N -0.403 5.403 25 O 0.072 5.928 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.255 0.745 41 H 0.081 0.919 42 H 0.009 0.991 43 H 0.048 0.952 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 -5.987 21.498 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.035 4.035 3 N -0.238 5.238 4 C -0.103 4.103 5 C 0.024 3.976 6 N -0.281 5.281 7 C -0.041 4.041 8 C -0.146 4.146 9 C -0.044 4.044 10 N -0.273 5.273 11 C 0.089 3.911 12 H -0.001 1.001 13 C -0.189 4.189 14 C -0.635 4.635 15 H 0.048 0.952 16 C -0.208 4.208 17 N -0.562 5.562 18 Si 0.894 3.106 19 H -0.212 1.212 20 H -0.201 1.201 21 H -0.176 1.176 22 C -0.057 4.057 23 C -0.054 4.054 24 N -0.113 5.113 25 O 0.013 5.987 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.136 0.864 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.249 -4.694 20.424 24.274 hybrid contribution 0.218 -1.886 0.522 1.969 sum -12.031 -6.580 20.946 25.035 Atomic orbital electron populations 1.20749 0.76490 1.07666 1.06857 1.29895 1.00534 0.79602 0.93422 1.71910 1.00469 1.29977 1.21439 1.25839 0.95924 0.88149 1.00370 1.20517 0.87976 0.98733 0.90375 1.60808 1.28314 1.30439 1.08512 1.22161 0.98747 0.90053 0.93187 1.21364 1.00927 0.97071 0.95217 1.21503 0.90788 0.92782 0.99345 1.59184 1.42206 1.23536 1.02344 1.19361 0.92638 0.88820 0.90304 1.00108 1.22009 0.98686 0.98840 0.99333 1.22027 1.55634 0.93318 0.92550 0.95248 1.26853 0.94154 1.07485 0.92314 1.70964 1.31240 1.21288 1.32737 0.83661 0.77084 0.73004 0.76841 1.21222 1.20096 1.17603 1.21081 0.99589 0.96170 0.88853 1.21942 0.87323 0.96701 0.99413 1.74652 0.98488 1.16005 1.22148 1.85250 1.11230 1.36320 1.65856 0.85965 0.86027 0.86955 0.90757 0.86366 0.94430 0.93682 0.91788 0.91330 0.95767 0.92429 0.92638 0.93584 0.94267 0.93600 0.90063 0.97288 0.93400 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.23 0.75 0.39 16 2 C 0.18 3.35 8.51 88.38 0.75 4.10 16 3 N -0.50 -12.44 11.55 -303.21 -3.50 -15.94 16 4 C 0.17 4.38 5.94 138.46 0.82 5.21 16 5 C 0.15 3.54 5.59 85.56 0.48 4.02 16 6 N -0.55 -15.72 4.10 -899.78 -3.69 -19.41 16 7 C 0.09 2.62 4.29 86.31 0.37 2.99 16 8 C -0.11 -3.76 5.36 30.11 0.16 -3.60 16 9 C 0.08 3.49 5.06 85.39 0.43 3.92 16 10 N -0.55 -23.14 3.97 -891.51 -3.54 -26.68 16 11 C 0.20 9.44 1.71 44.17 0.08 9.51 16 12 H -0.02 -0.91 6.68 -2.39 -0.02 -0.93 16 13 C -0.13 -5.66 8.42 71.98 0.61 -5.06 16 14 C -0.60 -34.10 7.57 25.60 0.19 -33.90 16 15 H 0.03 1.85 6.91 -2.91 -0.02 1.83 16 16 C -0.01 -0.45 5.10 84.66 0.43 -0.02 16 17 N -0.93 -58.09 13.69 21.45 0.29 -57.79 16 18 Si 1.07 50.87 26.58 68.60 1.82 52.70 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.25 -10.76 6.50 99.48 0.65 -10.11 16 22 C 0.07 2.52 4.89 87.95 0.43 2.95 16 23 C 0.07 2.03 5.41 87.14 0.47 2.50 16 24 N -0.40 -10.50 11.52 -60.33 -0.69 -11.19 16 25 O 0.07 1.56 11.31 74.83 0.85 2.41 16 26 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 27 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 30 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.04 1.47 7.22 -2.39 -0.02 1.45 16 33 H 0.06 2.34 7.23 -2.39 -0.02 2.32 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 36 H 0.06 2.82 5.64 -2.38 -0.01 2.81 16 37 H 0.05 2.00 6.71 -2.39 -0.02 1.98 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.77 5.93 -2.39 -0.01 1.75 16 40 H 0.26 16.22 8.73 -92.71 -0.81 15.42 16 41 H 0.08 2.60 5.87 -2.39 -0.01 2.59 16 42 H 0.01 0.33 8.06 -2.39 -0.02 0.32 16 43 H 0.05 1.40 6.93 -2.39 -0.02 1.38 16 44 H 0.10 2.13 7.62 -2.39 -0.02 2.11 16 Total: -1.00 -71.84 337.70 -1.60 -73.44 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.90 Total: 9.47 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 5.97 Total: -6.99 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -11.14 Total: -131.02 kcal Atomic # 8 Polarization: 1.56 SS G_CDS: 0.85 Total: 2.41 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.82 Total: 52.70 kcal Total: -71.84 -1.60 -73.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.662 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds