Wall clock time and date at job start Tue Mar 31 2020 03:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47013 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46808 * 120.00120 * 9 7 5 12 12 H 1.48501 * 109.46891 * 240.00253 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47176 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99883 * 293.94754 * 16 15 13 18 18 C 1.46899 * 111.00143 * 169.99759 * 16 15 13 19 19 C 1.50703 * 109.47387 * 189.99525 * 18 16 15 20 20 C 1.39874 * 126.03613 * 90.02467 * 19 18 16 21 21 N 1.30835 * 108.20052 * 179.97438 * 20 19 18 22 22 N 1.40088 * 108.20327 * 0.02562 * 21 20 19 23 23 C 1.46505 * 126.03589 * 180.02562 * 22 21 20 24 24 C 1.34942 * 107.92691 * 359.75788 * 22 21 20 25 25 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 26 26 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 28 28 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 29 29 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 30 30 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 31 31 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 32 32 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 34 34 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 35 35 H 1.09007 * 109.47214 * 60.00587 * 17 16 15 36 36 H 1.09002 * 109.47259 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47697 * 300.00606 * 17 16 15 38 38 H 1.08998 * 109.47358 * 310.00253 * 18 16 15 39 39 H 1.09003 * 109.47119 * 69.99597 * 18 16 15 40 40 H 1.07993 * 125.89717 * 359.97438 * 20 19 18 41 41 H 1.09004 * 109.47356 * 89.97065 * 23 22 21 42 42 H 1.08993 * 109.47166 * 209.97864 * 23 22 21 43 43 H 1.09005 * 109.47098 * 329.97330 * 23 22 21 44 44 H 1.08006 * 126.12574 * 180.24252 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.6010 1.2416 -2.4166 11 1 5.9212 1.4175 -4.7374 12 1 6.6203 3.3984 -3.5257 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3100 2.2059 3.5889 17 6 3.7465 2.5107 3.6272 18 6 1.8578 1.6396 4.8667 19 6 1.9743 2.6829 5.9479 20 6 0.9834 3.5979 6.3186 21 7 1.4530 4.3375 7.2904 22 7 2.7598 3.9162 7.5686 23 6 3.6478 4.4788 8.5891 24 6 3.0540 2.8968 6.7348 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1412 -1.1383 32 1 3.6750 3.5167 -4.4438 33 1 0.9446 1.0112 2.5303 34 1 2.6229 0.4185 2.5298 35 1 4.0406 2.9931 2.6949 36 1 3.9541 3.1784 4.4634 37 1 4.3109 1.5866 3.7519 38 1 0.8184 1.3240 4.7767 39 1 2.4775 0.7802 5.1228 40 1 0.0005 3.6797 5.8787 41 1 3.5046 3.9460 9.5292 42 1 4.6837 4.3747 8.2666 43 1 3.4157 5.5344 8.7307 44 1 3.9853 2.3509 6.7004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076649959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:30 Heat of formation + Delta-G solvation = 59.887910 kcal Electronic energy + Delta-G solvation = -23796.442352 eV Core-core repulsion = 20365.438688 eV Total energy + Delta-G solvation = -3431.003664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27912 -39.20473 -36.71792 -35.09351 -33.37846 -32.76279 -30.91885 -30.02602 -28.47433 -27.93184 -26.57704 -25.62822 -23.14280 -22.85434 -21.61783 -21.12463 -20.13836 -18.21684 -16.94333 -16.49449 -16.29782 -15.85133 -15.46020 -15.25943 -14.67462 -14.40965 -14.34165 -14.16034 -13.60877 -13.31805 -13.26454 -12.86403 -12.80690 -12.70317 -12.42187 -12.31469 -11.95306 -11.71271 -11.48455 -11.34420 -11.20464 -11.07587 -10.84862 -10.67055 -10.64466 -10.49559 -10.07748 -9.56834 -9.47652 -8.79616 -8.54624 -8.40625 -7.95526 -7.56760 -6.00991 -4.05448 1.78732 2.41903 2.71643 3.30899 3.38242 3.41587 3.54866 3.87284 4.34648 4.43933 4.50572 4.69426 4.87881 5.01700 5.04576 5.13891 5.16480 5.29909 5.33558 5.38042 5.47027 5.58140 5.64032 5.68998 5.71522 5.79805 5.86071 5.90086 6.07120 6.08171 6.27868 6.49125 6.53251 6.58282 6.88590 7.05155 7.23836 7.30250 7.52377 7.62916 7.63658 7.96549 8.28410 8.52739 8.95632 9.22881 9.59789 11.07005 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.003363 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.911037 B = 8324.106233 C = 9178.439851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.519 5.519 17 C 0.021 3.979 18 C 0.132 3.868 19 C -0.221 4.221 20 C 0.069 3.931 21 N -0.303 5.303 22 N -0.380 5.380 23 C 0.103 3.897 24 C 0.058 3.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.183 0.817 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -6.272 20.841 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.243 5.243 17 C -0.127 4.127 18 C 0.004 3.996 19 C -0.233 4.233 20 C -0.117 4.117 21 N -0.124 5.124 22 N -0.162 5.162 23 C -0.038 4.038 24 C -0.089 4.089 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.200 0.800 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.844 -4.078 21.504 22.071 hybrid contribution 1.652 -1.634 -0.871 2.481 sum -1.193 -5.711 20.633 21.442 Atomic orbital electron populations 1.22227 0.96843 1.01286 1.02402 1.21388 0.93490 0.84387 1.02458 1.48257 1.64280 1.13149 1.07703 1.19235 0.96085 0.93689 0.78186 1.21479 0.97002 1.31658 1.06097 0.92549 1.24936 0.97751 0.95010 0.96466 1.69944 1.35541 1.33549 1.14341 0.86467 0.84804 0.78008 0.78271 1.19878 1.21019 1.20909 1.20140 0.78819 0.87080 0.84720 1.90635 1.44758 1.17781 1.86761 1.22085 1.02163 0.94177 0.90964 1.61629 1.17786 1.43624 1.01219 1.22553 0.86340 0.99249 1.04534 1.20327 1.00630 0.92236 0.86422 1.19883 0.94978 1.05138 1.03293 1.23773 1.00270 0.93363 0.94297 1.77353 0.91977 1.23418 1.19691 1.48418 1.11776 1.26822 1.29233 1.21813 0.92055 1.00542 0.89408 1.22306 1.00170 0.92899 0.93490 0.92049 0.92297 0.92983 0.90097 0.91979 0.95141 0.93901 0.92826 0.88636 0.92738 0.88874 0.91971 0.96733 0.90087 0.94604 0.80005 0.91001 0.89606 0.89362 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.66 2.46 -175.06 -0.43 -13.09 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.47 16 5 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.58 7.40 -10.98 -0.08 10.50 16 14 O -0.52 -13.31 13.89 5.56 0.08 -13.24 16 15 C 0.04 0.56 4.00 -4.98 -0.02 0.54 16 16 N -0.52 -7.85 4.49 -245.82 -1.10 -8.95 16 17 C 0.02 0.33 8.98 60.07 0.54 0.87 16 18 C 0.13 1.52 5.45 -4.98 -0.03 1.49 16 19 C -0.22 -2.64 4.99 -105.05 -0.52 -3.16 16 20 C 0.07 0.87 11.96 -17.36 -0.21 0.67 16 21 N -0.30 -4.07 12.58 30.62 0.39 -3.69 16 22 N -0.38 -4.19 4.01 -68.16 -0.27 -4.46 16 23 C 0.10 0.67 11.47 59.85 0.69 1.36 16 24 C 0.06 0.61 9.94 -17.23 -0.17 0.44 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 30 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.22 6.98 -51.93 -0.36 0.86 16 34 H 0.05 0.74 7.38 -51.93 -0.38 0.36 16 35 H 0.09 1.82 5.88 -51.92 -0.31 1.52 16 36 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 39 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -35.94 362.64 -7.12 -43.07 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.06 Total: -1.39 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 0.10 Total: 5.42 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.69 Total: -56.25 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.94 -7.12 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076649959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.953 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds