Wall clock time and date at job start Tue Mar 31 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47013 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46808 * 120.00120 * 9 7 5 12 12 H 1.48501 * 109.46891 * 240.00253 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47176 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99883 * 293.94754 * 16 15 13 18 18 C 1.46899 * 111.00143 * 169.99759 * 16 15 13 19 19 C 1.50703 * 109.47387 * 189.99525 * 18 16 15 20 20 C 1.39874 * 126.03613 * 90.02467 * 19 18 16 21 21 N 1.30835 * 108.20052 * 179.97438 * 20 19 18 22 22 N 1.40088 * 108.20327 * 0.02562 * 21 20 19 23 23 C 1.46505 * 126.03589 * 180.02562 * 22 21 20 24 24 C 1.34942 * 107.92691 * 359.75788 * 22 21 20 25 25 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 26 26 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 28 28 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 29 29 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 30 30 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 31 31 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 32 32 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 34 34 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 35 35 H 1.09007 * 109.47214 * 60.00587 * 17 16 15 36 36 H 1.09002 * 109.47259 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47697 * 300.00606 * 17 16 15 38 38 H 1.08998 * 109.47358 * 310.00253 * 18 16 15 39 39 H 1.09003 * 109.47119 * 69.99597 * 18 16 15 40 40 H 1.07993 * 125.89717 * 359.97438 * 20 19 18 41 41 H 1.09004 * 109.47356 * 89.97065 * 23 22 21 42 42 H 1.08993 * 109.47166 * 209.97864 * 23 22 21 43 43 H 1.09005 * 109.47098 * 329.97330 * 23 22 21 44 44 H 1.08006 * 126.12574 * 180.24252 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.6010 1.2416 -2.4166 11 1 5.9212 1.4175 -4.7374 12 1 6.6203 3.3984 -3.5257 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3100 2.2059 3.5889 17 6 3.7465 2.5107 3.6272 18 6 1.8578 1.6396 4.8667 19 6 1.9743 2.6829 5.9479 20 6 0.9834 3.5979 6.3186 21 7 1.4530 4.3375 7.2904 22 7 2.7598 3.9162 7.5686 23 6 3.6478 4.4788 8.5891 24 6 3.0540 2.8968 6.7348 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6878 -2.0284 31 1 2.0954 3.1412 -1.1383 32 1 3.6750 3.5167 -4.4438 33 1 0.9446 1.0112 2.5303 34 1 2.6229 0.4185 2.5298 35 1 4.0406 2.9931 2.6949 36 1 3.9541 3.1784 4.4634 37 1 4.3109 1.5866 3.7519 38 1 0.8184 1.3240 4.7767 39 1 2.4775 0.7802 5.1228 40 1 0.0005 3.6797 5.8787 41 1 3.5046 3.9460 9.5292 42 1 4.6837 4.3747 8.2666 43 1 3.4157 5.5344 8.7307 44 1 3.9853 2.3509 6.7004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076649959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:29 Heat of formation + Delta-G solvation = 33.975504 kcal Electronic energy + Delta-G solvation = -23797.565998 eV Core-core repulsion = 20365.438688 eV Total energy + Delta-G solvation = -3432.127311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10225 -40.75422 -37.92761 -36.71990 -34.88879 -34.11772 -31.94084 -31.48735 -29.91113 -28.76326 -28.21163 -26.62769 -24.92187 -24.11474 -22.94879 -21.92958 -20.99281 -19.77040 -18.60250 -18.00430 -17.56048 -17.19726 -16.72725 -16.31585 -16.22852 -15.64669 -15.51548 -15.30436 -14.91228 -14.58140 -14.38531 -14.16921 -13.83291 -13.66946 -13.56100 -13.36469 -13.26541 -13.18144 -13.06814 -12.67023 -12.62798 -12.55325 -12.41193 -12.25168 -12.10840 -11.77632 -11.64509 -11.52851 -10.63675 -10.42973 -10.30526 -9.40738 -9.34306 -9.02412 -8.20242 -6.35272 0.98347 1.36192 1.38754 1.50448 1.73476 1.81714 1.96533 2.33501 2.48279 3.08758 3.29281 3.72329 3.81037 4.01135 4.14551 4.20998 4.35160 4.37359 4.42507 4.45077 4.49777 4.54313 4.64491 4.68916 4.69561 4.75192 4.89548 4.96839 4.99626 5.04906 5.10441 5.20136 5.25334 5.26699 5.45363 5.62103 5.73194 5.91825 6.07711 6.10959 6.17288 6.27910 6.74192 6.78547 6.92101 7.31695 7.63485 8.86736 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.003363 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.911037 B = 8324.106233 C = 9178.439851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.053 3.947 16 N -0.543 5.543 17 C 0.031 3.969 18 C 0.139 3.861 19 C -0.241 4.241 20 C 0.054 3.946 21 N -0.341 5.341 22 N -0.384 5.384 23 C 0.094 3.906 24 C 0.063 3.937 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.019 0.981 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.190 0.810 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -8.971 22.709 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.077 4.077 16 N -0.267 5.267 17 C -0.117 4.117 18 C 0.012 3.988 19 C -0.253 4.253 20 C -0.132 4.132 21 N -0.163 5.163 22 N -0.166 5.166 23 C -0.046 4.046 24 C -0.084 4.084 25 H 0.053 0.947 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.037 0.963 31 H 0.010 0.990 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.207 0.793 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.104 0.896 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.979 -6.822 23.408 24.462 hybrid contribution 1.359 -0.752 -1.392 2.086 sum -0.619 -7.574 22.016 23.291 Atomic orbital electron populations 1.22158 0.94639 1.03444 1.01668 1.21733 0.95276 0.81356 1.03821 1.48299 1.64422 1.15105 1.06133 1.18638 0.95156 0.91360 0.80627 1.21745 0.97888 1.31702 1.06330 0.92848 1.25886 1.02415 0.94553 0.96522 1.70071 1.37735 1.34387 1.14847 0.85360 0.79020 0.77947 0.78423 1.18931 1.19441 1.20918 1.21303 0.77282 0.86694 0.86394 1.90612 1.47189 1.20605 1.87749 1.21995 1.04498 0.93809 0.87408 1.61532 1.17447 1.44922 1.02842 1.22338 0.87284 0.99965 1.02157 1.20362 1.01844 0.92454 0.84161 1.20060 0.95349 1.05760 1.04150 1.24059 1.01088 0.93625 0.94385 1.77282 0.93672 1.24647 1.20727 1.48793 1.11348 1.26749 1.29700 1.22153 0.92554 1.00538 0.89397 1.22804 1.00779 0.92364 0.92485 0.94651 0.88589 0.91898 0.91261 0.88035 0.96302 0.98975 0.92504 0.85509 0.90033 0.93754 0.91203 0.94635 0.88502 0.92328 0.79275 0.89229 0.87164 0.89619 0.78415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.14 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.61 -25.87 2.46 -826.16 -2.03 -27.90 16 4 C 0.26 14.57 5.16 85.63 0.44 15.01 16 5 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 9 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 C 0.49 20.77 7.40 87.66 0.65 21.42 16 14 O -0.58 -31.03 13.89 -3.02 -0.04 -31.07 16 15 C 0.05 1.47 4.00 85.56 0.34 1.82 16 16 N -0.54 -15.33 4.49 -931.64 -4.18 -19.51 16 17 C 0.03 0.92 8.98 127.69 1.15 2.07 16 18 C 0.14 2.72 5.45 85.56 0.47 3.19 16 19 C -0.24 -5.25 4.99 -20.14 -0.10 -5.35 16 20 C 0.05 1.32 11.96 85.24 1.02 2.34 16 21 N -0.34 -9.00 12.58 -57.03 -0.72 -9.71 16 22 N -0.38 -7.82 4.01 -369.56 -1.48 -9.30 16 23 C 0.09 1.03 11.47 127.77 1.47 2.50 16 24 C 0.06 1.18 9.94 83.54 0.83 2.01 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.38 7.22 -2.39 -0.02 1.37 16 28 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 29 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 30 H 0.02 1.07 8.07 -2.38 -0.02 1.05 16 31 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 32 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.13 2.71 6.98 -2.39 -0.02 2.70 16 34 H 0.08 1.85 7.38 -2.39 -0.02 1.83 16 35 H 0.04 1.78 5.88 -2.38 -0.01 1.76 16 36 H 0.07 1.91 6.11 -2.39 -0.01 1.90 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.58 7.93 -2.39 -0.02 1.56 16 39 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.19 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -83.82 362.64 3.04 -80.78 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.97 Total: 11.53 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 8.21 Total: 14.86 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -8.13 Total: -123.58 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.04 Total: -31.07 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -83.82 3.04 -80.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076649959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.758 kcal (2) G-P(sol) polarization free energy of solvation -83.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds