Wall clock time and date at job start Tue Mar 31 2020 03:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00068 * 2 1 3 5 5 O 1.21273 * 119.99806 * 120.00004 * 4 2 1 6 6 N 1.34768 * 119.99753 * 299.99498 * 4 2 1 7 7 C 1.46500 * 120.00243 * 0.02562 * 6 4 2 8 8 C 1.46505 * 120.00072 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.46875 * 90.00386 * 8 6 4 10 10 H 1.07994 * 120.00372 * 0.02562 * 9 8 6 11 11 C 1.37883 * 119.99688 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99849 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99813 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46981 * 89.99919 * 13 11 9 15 15 H 1.48501 * 109.46991 * 209.99811 * 13 11 9 16 16 H 1.48503 * 109.47010 * 330.00078 * 13 11 9 17 17 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 18 18 C 1.46898 * 110.99888 * 306.04751 * 17 2 1 19 19 C 1.46902 * 110.99573 * 70.00117 * 17 2 1 20 20 C 1.50708 * 109.46760 * 169.99885 * 19 17 2 21 21 C 1.39866 * 126.03818 * 269.69338 * 20 19 17 22 22 N 1.30845 * 108.19996 * 179.82153 * 21 20 19 23 23 N 1.40084 * 108.20352 * 0.43066 * 22 21 20 24 24 C 1.46503 * 126.03654 * 179.70060 * 23 22 21 25 25 C 1.34946 * 107.92743 * 359.72613 * 23 22 21 26 26 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 27 27 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 29 29 H 1.09000 * 109.47543 * 89.99819 * 7 6 4 30 30 H 1.09000 * 109.47126 * 209.99372 * 7 6 4 31 31 H 1.08996 * 109.47279 * 329.99518 * 7 6 4 32 32 H 1.08997 * 109.47238 * 210.00736 * 8 6 4 33 33 H 1.09001 * 109.46749 * 330.00070 * 8 6 4 34 34 H 0.97008 * 119.99723 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47334 * 60.00212 * 18 17 2 36 36 H 1.09000 * 109.46674 * 180.02562 * 18 17 2 37 37 H 1.08995 * 109.47296 * 299.99911 * 18 17 2 38 38 H 1.08993 * 109.47196 * 289.99473 * 19 17 2 39 39 H 1.09000 * 109.47010 * 50.00282 * 19 17 2 40 40 H 1.07996 * 125.90448 * 359.97438 * 21 20 19 41 41 H 1.09006 * 109.46955 * 270.02777 * 24 23 22 42 42 H 1.08994 * 109.47403 * 30.02637 * 24 23 22 43 43 H 1.09000 * 109.46916 * 150.03375 * 24 23 22 44 44 H 1.07997 * 126.12935 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7069 -0.2499 2.4545 7 6 0.8642 0.9409 2.5889 8 6 2.1947 -0.9408 3.6507 9 6 3.5224 -0.3579 4.0611 10 1 3.9589 0.4470 3.4885 11 6 4.1798 -0.8522 5.1677 12 7 3.6480 -1.8320 5.8653 13 14 5.8260 -0.1301 5.6760 14 1 5.6029 0.9949 6.6194 15 1 6.6425 -1.1780 6.3396 16 1 6.5410 0.3670 4.4731 17 7 2.0197 -0.6926 -1.1995 18 6 1.4343 -2.0355 -1.3078 19 6 1.7529 0.0972 -2.4090 20 6 2.4774 -0.5163 -3.5795 21 6 3.7738 -0.2030 -4.0008 22 7 4.0548 -0.9426 -5.0429 23 7 2.9407 -1.7440 -5.3240 24 6 2.8307 -2.7147 -6.4158 25 6 1.9865 -1.4635 -4.4119 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.1836 0.6427 2.6225 30 1 1.1220 1.4665 3.5084 31 1 1.0274 1.5996 1.7360 32 1 1.4767 -0.8153 4.4611 33 1 2.3154 -2.0021 3.4335 34 1 4.1107 -2.1800 6.6437 35 1 0.3490 -1.9549 -1.3693 36 1 1.8140 -2.5261 -2.2040 37 1 1.7058 -2.6221 -0.4302 38 1 0.6814 0.1052 -2.6087 39 1 2.1025 1.1189 -2.2603 40 1 4.4305 0.5222 -3.5434 41 1 2.4310 -2.2212 -7.3018 42 1 3.8163 -3.1222 -6.6404 43 1 2.1627 -3.5227 -6.1175 44 1 1.0066 -1.9141 -4.3564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078720929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:58 Heat of formation + Delta-G solvation = 71.819844 kcal Electronic energy + Delta-G solvation = -24088.565992 eV Core-core repulsion = 20658.079735 eV Total energy + Delta-G solvation = -3430.486257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27887 -39.56536 -36.90494 -34.76409 -33.50417 -32.67032 -31.47937 -29.65324 -27.96550 -27.49431 -26.33323 -25.90803 -24.65503 -23.07720 -21.16953 -21.11018 -19.97972 -18.26987 -16.92520 -16.62597 -16.31462 -15.74833 -15.48431 -15.00663 -14.67336 -14.51593 -14.32636 -14.02725 -13.73295 -13.58653 -13.03184 -12.91093 -12.83630 -12.64689 -12.32646 -12.28600 -12.12737 -11.76774 -11.46710 -11.27406 -11.15274 -11.08137 -10.96241 -10.82099 -10.60729 -10.51378 -10.09629 -9.55521 -9.46040 -8.71771 -8.52855 -8.38672 -7.92297 -7.53797 -5.99415 -4.03615 1.79928 2.43040 2.73549 3.34062 3.40817 3.45441 3.55195 3.89052 4.34451 4.43530 4.51806 4.69365 4.88077 5.02697 5.03308 5.06050 5.14116 5.22575 5.29734 5.35526 5.40936 5.57425 5.64056 5.65319 5.77268 5.78635 5.81570 5.86971 5.97105 6.09718 6.15469 6.31252 6.45207 6.60046 6.89919 7.04424 7.26868 7.31459 7.50537 7.62476 7.64623 7.97922 8.29329 8.51046 8.97207 9.22396 9.61621 11.08623 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.003435 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.257431 B = 8148.257204 C = 8818.167312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 H 0.101 0.899 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 N -0.511 5.511 18 C 0.018 3.982 19 C 0.132 3.868 20 C -0.220 4.220 21 C 0.070 3.930 22 N -0.303 5.303 23 N -0.381 5.381 24 C 0.104 3.896 25 C 0.057 3.943 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.019 0.981 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.183 0.817 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 3.678 -20.641 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.048 4.048 3 H 0.118 0.882 4 C 0.297 3.703 5 O -0.398 6.398 6 N -0.338 5.338 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.198 1.198 17 N -0.234 5.234 18 C -0.129 4.129 19 C 0.003 3.997 20 C -0.232 4.232 21 C -0.117 4.117 22 N -0.124 5.124 23 N -0.163 5.163 24 C -0.038 4.038 25 C -0.090 4.090 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.200 0.800 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.938 2.548 -21.486 23.047 hybrid contribution -0.612 0.667 0.932 1.299 sum -8.550 3.216 -20.554 22.493 Atomic orbital electron populations 1.22660 0.96193 1.03189 1.03316 1.21662 0.93649 0.98839 0.90620 0.88153 1.20064 0.81094 0.85225 0.83904 1.90631 1.36938 1.26432 1.85792 1.48119 1.50008 1.28334 1.07290 1.21761 0.93666 0.88291 1.02410 1.19252 0.94132 0.93673 0.80162 1.21452 1.04831 1.18932 1.11017 0.92439 1.24937 0.97930 0.94971 0.96327 1.69936 1.39069 1.26160 1.18418 0.86504 0.83747 0.78636 0.78597 1.20707 1.21137 1.19813 1.61842 1.58710 1.02673 1.00184 1.22570 0.95585 0.90824 1.03949 1.20331 0.96277 0.96464 0.86593 1.19898 0.96868 1.04831 1.01592 1.23794 0.95670 0.98616 0.93610 1.77363 1.07538 1.08243 1.19260 1.48417 1.10914 1.32440 1.24524 1.21805 1.04260 0.90194 0.87534 1.22284 0.95651 0.99127 0.91904 0.92159 0.91808 0.90229 0.93649 0.90950 0.92387 0.95149 0.93940 0.92794 0.96215 0.92078 0.89230 0.94444 0.90147 0.79994 0.91012 0.89382 0.89653 0.81425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 8.08 37.16 0.30 -2.01 16 2 C 0.06 0.98 1.93 -68.86 -0.13 0.84 16 3 H 0.10 1.39 7.19 -51.93 -0.37 1.02 16 4 C 0.51 10.72 6.80 -10.99 -0.07 10.64 16 5 O -0.52 -13.35 13.89 5.56 0.08 -13.27 16 6 N -0.60 -12.80 2.86 -182.96 -0.52 -13.32 16 7 C 0.08 1.29 8.80 59.85 0.53 1.81 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 9 C -0.52 -15.07 9.39 -34.44 -0.32 -15.39 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 13 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.51 -7.70 4.44 -237.73 -1.06 -8.76 16 18 C 0.02 0.27 8.43 60.06 0.51 0.78 16 19 C 0.13 1.53 5.02 -4.97 -0.02 1.50 16 20 C -0.22 -2.66 4.99 -105.05 -0.52 -3.18 16 21 C 0.07 0.90 11.96 -17.36 -0.21 0.70 16 22 N -0.30 -4.16 12.58 30.62 0.39 -3.77 16 23 N -0.38 -4.22 4.01 -68.16 -0.27 -4.49 16 24 C 0.10 0.68 11.47 59.85 0.69 1.36 16 25 C 0.06 0.60 9.92 -17.22 -0.17 0.43 16 26 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 27 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 28 H 0.08 0.89 4.53 -51.93 -0.24 0.65 16 29 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 30 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.06 0.73 6.01 -51.93 -0.31 0.42 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.02 0.25 6.21 -51.93 -0.32 -0.08 16 36 H 0.06 0.85 6.10 -51.93 -0.32 0.53 16 37 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 38 H 0.04 0.38 7.06 -51.93 -0.37 0.01 16 39 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 40 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -36.39 350.66 -6.53 -42.92 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.57 Total: -1.18 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 0.44 Total: 5.63 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.73 Total: -56.61 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.39 -6.53 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078720929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.740 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds