Wall clock time and date at job start Tue Mar 31 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31137 * 126.55170 * 2 1 4 4 C 1.34490 * 105.61397 * 180.12095 * 3 2 1 5 5 C 1.50701 * 126.28848 * 179.90212 * 4 3 2 6 6 N 1.46901 * 109.46921 * 269.70867 * 5 4 3 7 7 C 1.46848 * 111.00109 * 45.79068 * 6 5 4 8 8 C 1.53036 * 109.52325 * 185.83663 * 7 6 5 9 9 C 1.53123 * 109.27910 * 300.81822 * 8 7 6 10 10 C 1.53121 * 109.15709 * 57.65405 * 9 8 7 11 11 H 1.09006 * 109.50060 * 62.28789 * 10 9 8 12 12 N 1.46898 * 109.53206 * 182.38055 * 10 9 8 13 13 C 1.46895 * 111.00535 * 274.82485 * 12 10 9 14 14 H 1.09002 * 109.47103 * 35.00192 * 13 12 10 15 15 C 1.53006 * 109.47250 * 275.00217 * 13 12 10 16 16 C 1.50696 * 109.47478 * 155.00222 * 13 12 10 17 17 H 1.08006 * 119.99999 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00575 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99512 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00304 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47086 * 60.00079 * 20 18 16 22 22 H 1.48504 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46880 * 299.99645 * 20 18 16 24 24 C 1.46849 * 110.99649 * 169.99608 * 6 5 4 25 25 N 1.29950 * 107.42692 * 359.63854 * 4 3 2 26 26 O 1.21302 * 110.24792 * 0.22714 * 25 4 3 27 27 H 1.08991 * 109.47350 * 180.25371 * 1 2 3 28 28 H 1.08997 * 109.47209 * 300.26176 * 1 2 3 29 29 H 1.09005 * 109.47025 * 60.25549 * 1 2 3 30 30 H 1.09002 * 109.47060 * 29.71048 * 5 4 3 31 31 H 1.09001 * 109.47380 * 149.71135 * 5 4 3 32 32 H 1.08997 * 109.46035 * 305.85174 * 7 6 5 33 33 H 1.09006 * 109.46342 * 65.82071 * 7 6 5 34 34 H 1.09005 * 109.50033 * 180.87700 * 8 7 6 35 35 H 1.09000 * 109.53750 * 60.78108 * 8 7 6 36 36 H 1.09001 * 109.52263 * 297.75434 * 9 8 7 37 37 H 1.09000 * 109.51937 * 177.56068 * 9 8 7 38 38 H 1.00899 * 111.00022 * 38.78370 * 12 10 9 39 39 H 1.08995 * 109.46808 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46750 * 299.99976 * 15 13 12 41 41 H 1.08996 * 109.47006 * 59.99884 * 15 13 12 42 42 H 0.97001 * 119.99982 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46678 * 294.17655 * 24 6 5 44 44 H 1.09003 * 109.46322 * 54.14853 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 -0.0027 5 6 4.8112 1.3886 -0.0059 6 7 5.2235 1.6473 -1.3920 7 6 4.0816 2.0768 -2.2093 8 6 4.5156 2.1961 -3.6719 9 6 5.6555 3.2129 -3.7797 10 6 6.8130 2.7671 -2.8819 11 1 7.1922 1.8054 -3.2276 12 7 7.8886 3.7662 -2.9350 13 6 8.7745 3.5256 -4.0817 14 1 8.1894 3.1471 -4.9198 15 6 9.8390 2.4962 -3.6967 16 6 9.4441 4.8160 -4.4788 17 1 9.2329 5.7240 -3.9334 18 6 10.3262 4.8375 -5.5382 19 7 10.5838 3.7317 -6.2020 20 14 11.1556 6.4372 -6.0308 21 1 11.9531 6.9532 -4.8893 22 1 12.0513 6.1939 -7.1900 23 1 10.1221 7.4360 -6.4042 24 6 6.3123 2.6313 -1.4421 25 7 3.4645 -0.7242 0.0036 26 8 2.3029 -1.0735 0.0053 27 1 -0.3633 -1.0276 0.0046 28 1 -0.3633 0.5179 0.8876 29 1 -0.3633 0.5099 -0.8923 30 1 4.6347 2.3360 0.5035 31 1 5.5983 0.8394 0.5107 32 1 3.2798 1.3431 -2.1271 33 1 3.7257 3.0447 -1.8560 34 1 3.6718 2.5300 -4.2758 35 1 4.8585 1.2256 -4.0307 36 1 5.3015 4.1924 -3.4582 37 1 5.9969 3.2690 -4.8133 38 1 7.5121 4.7020 -2.9590 39 1 10.4961 2.3174 -4.5478 40 1 10.4242 2.8748 -2.8587 41 1 9.3548 1.5629 -3.4096 42 1 11.2047 3.7467 -6.9471 43 1 5.9460 3.5965 -1.0924 44 1 7.1308 2.3003 -0.8028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106662173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:19 Heat of formation + Delta-G solvation = 72.273977 kcal Electronic energy + Delta-G solvation = -23961.463603 eV Core-core repulsion = 20530.997038 eV Total energy + Delta-G solvation = -3430.466564 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.81207 -39.18927 -36.57069 -35.48023 -34.05920 -32.90839 -31.99824 -29.85466 -29.25320 -27.70986 -26.65433 -25.12230 -23.98451 -23.06331 -22.40649 -21.06507 -19.66276 -19.51173 -18.42795 -17.61504 -16.55042 -15.85008 -15.46657 -15.08090 -14.78078 -14.46479 -14.15488 -13.94947 -13.85288 -13.61658 -13.44447 -13.02028 -12.83637 -12.55925 -12.37130 -12.16766 -11.95617 -11.78072 -11.49420 -11.25211 -11.03790 -10.95784 -10.77584 -10.56758 -10.46134 -10.29802 -10.21344 -10.10195 -10.01493 -9.72764 -8.81955 -8.46119 -8.31895 -7.23558 -6.00948 -4.07392 0.94360 1.96057 2.59370 3.31591 3.34174 3.36206 3.38850 3.81616 3.95376 4.41630 4.65281 4.81978 4.85237 4.98293 5.04950 5.13295 5.22660 5.29028 5.30346 5.38326 5.41343 5.57949 5.60462 5.72168 5.77466 5.80390 5.95411 5.98920 6.06331 6.23532 6.30572 6.61998 6.65319 6.94174 7.02094 7.09303 7.20139 7.29041 7.56014 7.79567 7.92993 7.98982 8.29973 8.41632 8.69296 9.03457 9.58373 11.05289 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.002809 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.248335 B = 9966.983097 C =10138.100232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.481 5.481 4 C 0.180 3.820 5 C 0.145 3.855 6 N -0.532 5.532 7 C 0.062 3.938 8 C -0.112 4.112 9 C -0.148 4.148 10 C 0.095 3.905 11 H 0.080 0.920 12 N -0.684 5.684 13 C 0.215 3.785 14 H 0.003 0.997 15 C -0.125 4.125 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.072 3.928 25 N -0.367 5.367 26 O 0.076 5.924 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.330 0.670 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.005 0.995 42 H 0.261 0.739 43 H 0.034 0.966 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.443 -6.951 11.672 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.216 5.216 4 C -0.093 4.093 5 C 0.016 3.984 6 N -0.259 5.259 7 C -0.066 4.066 8 C -0.150 4.150 9 C -0.188 4.188 10 C -0.017 4.017 11 H 0.098 0.902 12 N -0.314 5.314 13 C 0.108 3.892 14 H 0.020 0.980 15 C -0.184 4.184 16 C -0.557 4.557 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.056 4.056 25 N -0.074 5.074 26 O 0.017 5.983 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.899 -7.875 11.773 23.618 hybrid contribution -0.555 1.820 -0.752 2.046 sum -19.454 -6.055 11.021 23.164 Atomic orbital electron populations 1.20367 0.80316 1.05529 1.05618 1.28835 0.98928 0.80915 0.96278 1.71932 1.00363 1.28983 1.20330 1.25647 0.94929 0.88296 1.00411 1.20370 0.88915 0.97003 0.92095 1.62058 1.09414 1.46878 1.07503 1.22085 0.92016 0.98575 0.93963 1.21532 0.98338 1.00395 0.94776 1.22345 0.96474 0.98135 1.01798 1.21449 0.90339 0.97833 0.92031 0.90180 1.60677 1.18119 1.04623 1.47989 1.19070 0.89630 0.95184 0.85345 0.97981 1.21730 0.99981 0.95572 1.01075 1.21227 1.25881 0.94319 1.14299 0.92367 1.24916 0.96535 0.96370 0.96165 1.69893 1.35605 1.26375 1.20960 0.86597 0.79371 0.83662 0.77966 1.20214 1.21324 1.20385 1.22107 0.92357 0.92041 0.99065 1.74692 0.96912 1.15714 1.20059 1.85324 1.11585 1.35802 1.65629 0.88545 0.87953 0.87913 0.91553 0.87849 0.92033 0.94538 0.92002 0.91356 0.92529 0.91255 0.85234 0.90172 0.95038 0.97595 0.92891 0.94761 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.17 1.53 8.51 -13.05 -0.11 1.42 16 3 N -0.48 -5.66 10.68 -9.87 -0.11 -5.76 16 4 C 0.18 2.35 5.95 -156.37 -0.93 1.42 16 5 C 0.15 1.84 5.90 -4.97 -0.03 1.81 16 6 N -0.53 -7.72 4.80 -236.11 -1.13 -8.85 16 7 C 0.06 0.86 4.96 -3.83 -0.02 0.84 16 8 C -0.11 -1.62 6.09 -26.65 -0.16 -1.79 16 9 C -0.15 -2.47 5.24 -26.61 -0.14 -2.61 16 10 C 0.09 1.73 2.44 -67.63 -0.16 1.56 16 11 H 0.08 1.63 7.12 -51.93 -0.37 1.26 16 12 N -0.68 -14.47 6.05 -100.87 -0.61 -15.08 16 13 C 0.22 5.44 2.42 -68.87 -0.17 5.27 16 14 H 0.00 0.07 7.15 -51.93 -0.37 -0.30 16 15 C -0.13 -3.17 9.18 37.16 0.34 -2.83 16 16 C -0.52 -14.22 8.59 -34.44 -0.30 -14.51 16 17 H 0.06 1.57 7.62 -52.48 -0.40 1.17 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 20 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.07 1.12 5.03 -3.83 -0.02 1.10 16 25 N -0.37 -4.95 12.16 30.90 0.38 -4.57 16 26 O 0.08 0.84 11.31 18.11 0.20 1.05 16 27 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.91 8.10 -51.93 -0.42 0.48 16 37 H 0.07 1.29 7.48 -51.93 -0.39 0.90 16 38 H 0.33 6.85 7.94 -39.29 -0.31 6.54 16 39 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.01 0.12 7.43 -51.93 -0.39 -0.27 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -30.91 349.99 -8.86 -39.77 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.05 Total: 3.32 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.41 Total: -6.52 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.85 Total: -59.22 kcal Atomic # 8 Polarization: 0.84 SS G_CDS: 0.20 Total: 1.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.91 -8.86 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106662173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.043 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds