Wall clock time and date at job start Tue Mar 31 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31137 * 126.55170 * 2 1 4 4 C 1.34490 * 105.61397 * 180.12095 * 3 2 1 5 5 C 1.50701 * 126.28848 * 179.90212 * 4 3 2 6 6 N 1.46901 * 109.46921 * 269.70867 * 5 4 3 7 7 C 1.46848 * 111.00109 * 45.79068 * 6 5 4 8 8 C 1.53036 * 109.52325 * 185.83663 * 7 6 5 9 9 C 1.53123 * 109.27910 * 300.81822 * 8 7 6 10 10 C 1.53121 * 109.15709 * 57.65405 * 9 8 7 11 11 H 1.09006 * 109.50060 * 62.28789 * 10 9 8 12 12 N 1.46898 * 109.53206 * 182.38055 * 10 9 8 13 13 C 1.46895 * 111.00535 * 274.82485 * 12 10 9 14 14 H 1.09002 * 109.47103 * 35.00192 * 13 12 10 15 15 C 1.53006 * 109.47250 * 275.00217 * 13 12 10 16 16 C 1.50696 * 109.47478 * 155.00222 * 13 12 10 17 17 H 1.08006 * 119.99999 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00575 * 180.02562 * 16 13 12 19 19 N 1.31518 * 119.99512 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00304 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47086 * 60.00079 * 20 18 16 22 22 H 1.48504 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46880 * 299.99645 * 20 18 16 24 24 C 1.46849 * 110.99649 * 169.99608 * 6 5 4 25 25 N 1.29950 * 107.42692 * 359.63854 * 4 3 2 26 26 O 1.21302 * 110.24792 * 0.22714 * 25 4 3 27 27 H 1.08991 * 109.47350 * 180.25371 * 1 2 3 28 28 H 1.08997 * 109.47209 * 300.26176 * 1 2 3 29 29 H 1.09005 * 109.47025 * 60.25549 * 1 2 3 30 30 H 1.09002 * 109.47060 * 29.71048 * 5 4 3 31 31 H 1.09001 * 109.47380 * 149.71135 * 5 4 3 32 32 H 1.08997 * 109.46035 * 305.85174 * 7 6 5 33 33 H 1.09006 * 109.46342 * 65.82071 * 7 6 5 34 34 H 1.09005 * 109.50033 * 180.87700 * 8 7 6 35 35 H 1.09000 * 109.53750 * 60.78108 * 8 7 6 36 36 H 1.09001 * 109.52263 * 297.75434 * 9 8 7 37 37 H 1.09000 * 109.51937 * 177.56068 * 9 8 7 38 38 H 1.00899 * 111.00022 * 38.78370 * 12 10 9 39 39 H 1.08995 * 109.46808 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.46750 * 299.99976 * 15 13 12 41 41 H 1.08996 * 109.47006 * 59.99884 * 15 13 12 42 42 H 0.97001 * 119.99982 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46678 * 294.17655 * 24 6 5 44 44 H 1.09003 * 109.46322 * 54.14853 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 -0.0027 5 6 4.8112 1.3886 -0.0059 6 7 5.2235 1.6473 -1.3920 7 6 4.0816 2.0768 -2.2093 8 6 4.5156 2.1961 -3.6719 9 6 5.6555 3.2129 -3.7797 10 6 6.8130 2.7671 -2.8819 11 1 7.1922 1.8054 -3.2276 12 7 7.8886 3.7662 -2.9350 13 6 8.7745 3.5256 -4.0817 14 1 8.1894 3.1471 -4.9198 15 6 9.8390 2.4962 -3.6967 16 6 9.4441 4.8160 -4.4788 17 1 9.2329 5.7240 -3.9334 18 6 10.3262 4.8375 -5.5382 19 7 10.5838 3.7317 -6.2020 20 14 11.1556 6.4372 -6.0308 21 1 11.9531 6.9532 -4.8893 22 1 12.0513 6.1939 -7.1900 23 1 10.1221 7.4360 -6.4042 24 6 6.3123 2.6313 -1.4421 25 7 3.4645 -0.7242 0.0036 26 8 2.3029 -1.0735 0.0053 27 1 -0.3633 -1.0276 0.0046 28 1 -0.3633 0.5179 0.8876 29 1 -0.3633 0.5099 -0.8923 30 1 4.6347 2.3360 0.5035 31 1 5.5983 0.8394 0.5107 32 1 3.2798 1.3431 -2.1271 33 1 3.7257 3.0447 -1.8560 34 1 3.6718 2.5300 -4.2758 35 1 4.8585 1.2256 -4.0307 36 1 5.3015 4.1924 -3.4582 37 1 5.9969 3.2690 -4.8133 38 1 7.5121 4.7020 -2.9590 39 1 10.4961 2.3174 -4.5478 40 1 10.4242 2.8748 -2.8587 41 1 9.3548 1.5629 -3.4096 42 1 11.2047 3.7467 -6.9471 43 1 5.9460 3.5965 -1.0924 44 1 7.1308 2.3003 -0.8028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106662173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:19 Heat of formation + Delta-G solvation = 48.830055 kcal Electronic energy + Delta-G solvation = -23962.480207 eV Core-core repulsion = 20530.997038 eV Total energy + Delta-G solvation = -3431.483169 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.66802 -40.46159 -37.88386 -36.72919 -35.21597 -34.30843 -33.40875 -31.53715 -29.80833 -28.95611 -28.18732 -27.22285 -25.00441 -24.09209 -23.69127 -22.23391 -21.42186 -20.86712 -19.30003 -18.62668 -18.34889 -17.10093 -16.94089 -16.38028 -15.96297 -15.71879 -15.51523 -15.36508 -15.01960 -14.54456 -14.41932 -14.17527 -14.05539 -13.74699 -13.59812 -13.44673 -13.22349 -12.94341 -12.89497 -12.80814 -12.54825 -12.42572 -12.23134 -12.16732 -12.11577 -12.02808 -11.84010 -11.57754 -11.36371 -10.94097 -10.88233 -10.56066 -9.45354 -9.00985 -8.12591 -6.26773 0.17710 1.09026 1.42395 1.44524 1.51958 1.96263 2.40840 2.51067 2.85532 3.01029 3.16133 3.64603 3.78807 3.85723 3.94997 3.98250 4.26049 4.30686 4.36570 4.45222 4.53025 4.58807 4.61943 4.65861 4.66540 4.72676 4.82061 4.85095 4.90145 4.99144 5.00399 5.08148 5.16097 5.20768 5.24753 5.30519 5.50938 5.68369 5.83299 5.90029 5.95992 6.22394 6.48678 6.78124 7.02179 7.18198 7.43625 8.93060 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.002809 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.248335 B = 9966.983097 C =10138.100232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.186 3.814 3 N -0.505 5.505 4 C 0.169 3.831 5 C 0.147 3.853 6 N -0.543 5.543 7 C 0.071 3.929 8 C -0.105 4.105 9 C -0.141 4.141 10 C 0.096 3.904 11 H 0.053 0.947 12 N -0.680 5.680 13 C 0.222 3.778 14 H -0.030 1.030 15 C -0.114 4.114 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.270 1.270 24 C 0.085 3.915 25 N -0.395 5.395 26 O 0.074 5.926 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.334 0.666 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.017 0.983 42 H 0.262 0.738 43 H 0.045 0.955 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.382 -6.183 12.662 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 N -0.240 5.240 4 C -0.104 4.104 5 C 0.018 3.982 6 N -0.270 5.270 7 C -0.057 4.057 8 C -0.144 4.144 9 C -0.180 4.180 10 C -0.015 4.015 11 H 0.072 0.928 12 N -0.310 5.310 13 C 0.114 3.886 14 H -0.012 1.012 15 C -0.172 4.172 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.042 4.042 25 N -0.104 5.104 26 O 0.014 5.986 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.152 0.848 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.871 -7.107 12.783 25.486 hybrid contribution -0.069 1.508 -1.039 1.832 sum -20.941 -5.599 11.744 24.653 Atomic orbital electron populations 1.20759 0.76365 1.07681 1.06947 1.29901 1.00521 0.79640 0.93315 1.71935 1.00132 1.29996 1.21951 1.25684 0.95487 0.88332 1.00863 1.20362 0.89299 0.97655 0.90862 1.61974 1.09519 1.46529 1.09011 1.21984 0.91738 0.98814 0.93135 1.21486 0.98059 0.98995 0.95841 1.22217 0.96636 0.99389 0.99752 1.21428 0.90027 0.95648 0.94370 0.92818 1.60581 1.19142 1.05496 1.45764 1.18822 0.89793 0.94385 0.85607 1.01210 1.21562 0.99625 0.96249 0.99804 1.21562 1.26218 0.95079 1.14631 0.92143 1.25747 0.97154 0.99650 0.96149 1.70031 1.36104 1.28377 1.21316 0.85543 0.78382 0.79651 0.77627 1.19613 1.21073 1.19516 1.21853 0.92825 0.92925 0.96642 1.74673 0.98302 1.16158 1.21265 1.85284 1.11183 1.36346 1.65748 0.86072 0.86179 0.86552 0.90405 0.87476 0.91881 0.94008 0.89934 0.92599 0.91421 0.93872 0.84834 0.92545 0.95249 0.96422 0.92886 0.93710 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 71.24 0.75 0.54 16 2 C 0.19 2.94 8.51 88.38 0.75 3.69 16 3 N -0.51 -11.03 10.68 -303.19 -3.24 -14.27 16 4 C 0.17 4.23 5.95 138.46 0.82 5.06 16 5 C 0.15 3.57 5.90 85.56 0.51 4.07 16 6 N -0.54 -15.30 4.80 -900.91 -4.32 -19.62 16 7 C 0.07 1.89 4.96 86.33 0.43 2.32 16 8 C -0.11 -2.97 6.09 30.65 0.19 -2.79 16 9 C -0.14 -4.68 5.24 30.68 0.16 -4.52 16 10 C 0.10 3.53 2.44 44.97 0.11 3.64 16 11 H 0.05 2.25 7.12 -2.38 -0.02 2.24 16 12 N -0.68 -28.96 6.05 -473.04 -2.86 -31.82 16 13 C 0.22 11.52 2.42 44.17 0.11 11.63 16 14 H -0.03 -1.70 7.15 -2.39 -0.02 -1.72 16 15 C -0.11 -5.90 9.18 71.98 0.66 -5.24 16 16 C -0.54 -29.67 8.59 25.60 0.22 -29.45 16 17 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 18 C 0.01 0.68 5.30 84.66 0.45 1.12 16 19 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 20 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.09 2.58 5.03 86.33 0.43 3.01 16 25 N -0.40 -10.40 12.16 -60.31 -0.73 -11.13 16 26 O 0.07 1.53 11.31 74.86 0.85 2.38 16 27 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 31 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.06 1.69 5.98 -2.39 -0.01 1.68 16 33 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 37 H 0.04 1.65 7.48 -2.39 -0.02 1.63 16 38 H 0.33 13.77 7.94 -89.69 -0.71 13.06 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.02 0.82 7.43 -2.39 -0.02 0.80 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 Total: -1.00 -67.37 349.99 -2.17 -69.54 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.28 Total: 19.61 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.59 Total: -6.92 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -10.92 Total: -130.39 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.85 Total: 2.38 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -67.37 -2.17 -69.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106662173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.373 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds