Wall clock time and date at job start Tue Mar 31 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 N 1.46504 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00259 * 274.37694 * 4 3 2 6 6 H 1.08003 * 120.00047 * 337.76509 * 5 4 3 7 7 C 1.38810 * 119.99868 * 157.77108 * 5 4 3 8 8 N 1.31619 * 120.00258 * 7.76346 * 7 5 4 9 9 Si 1.86803 * 119.99736 * 187.76264 * 7 5 4 10 10 H 1.48494 * 109.47343 * 90.00339 * 9 7 5 11 11 H 1.48506 * 109.46764 * 210.00106 * 9 7 5 12 12 H 1.48499 * 109.47211 * 329.99506 * 9 7 5 13 13 C 1.46502 * 119.99498 * 94.37250 * 4 3 2 14 14 C 1.50703 * 109.47219 * 269.99934 * 13 4 3 15 15 O 1.21277 * 119.99588 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99982 * 179.72259 * 14 13 4 17 17 C 1.46508 * 120.00018 * 0.28242 * 16 14 13 18 18 C 1.46498 * 120.00128 * 180.27684 * 16 14 13 19 19 C 1.50698 * 109.47136 * 90.00346 * 18 16 14 20 20 C 1.39873 * 126.04128 * 90.02485 * 19 18 16 21 21 N 1.30838 * 108.20264 * 179.97438 * 20 19 18 22 22 N 1.40085 * 108.20536 * 359.97438 * 21 20 19 23 23 C 1.46501 * 126.03630 * 179.97438 * 22 21 20 24 24 C 1.34943 * 107.92629 * 359.76201 * 22 21 20 25 25 H 1.08997 * 109.47560 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47349 * 299.99866 * 1 2 3 27 27 H 1.09001 * 109.47268 * 59.99489 * 1 2 3 28 28 H 1.08998 * 109.47233 * 240.00139 * 2 1 3 29 29 H 1.08997 * 109.47191 * 119.99760 * 2 1 3 30 30 H 1.09010 * 109.47082 * 60.00438 * 3 2 1 31 31 H 1.08994 * 109.47830 * 300.00140 * 3 2 1 32 32 H 0.97006 * 119.99999 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47149 * 150.00238 * 13 4 3 34 34 H 1.08996 * 109.47068 * 30.00277 * 13 4 3 35 35 H 1.08999 * 109.46751 * 89.99384 * 17 16 14 36 36 H 1.08999 * 109.46789 * 209.99428 * 17 16 14 37 37 H 1.09003 * 109.46666 * 329.99481 * 17 16 14 38 38 H 1.08994 * 109.47500 * 210.00368 * 18 16 14 39 39 H 1.08999 * 109.47195 * 330.00601 * 18 16 14 40 40 H 1.07995 * 125.89626 * 0.02562 * 20 19 18 41 41 H 1.08997 * 109.47023 * 89.97679 * 23 22 21 42 42 H 1.09000 * 109.47182 * 209.97945 * 23 22 21 43 43 H 1.09001 * 109.46867 * 329.98141 * 23 22 21 44 44 H 1.08000 * 126.12821 * 180.23810 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3523 1.1833 6 1 3.7090 1.6366 2.1080 7 6 5.4999 0.8954 1.1937 8 7 6.1359 0.6946 0.0589 9 14 6.3612 0.5657 2.8182 10 1 6.1290 -0.8435 3.2245 11 1 7.8190 0.8022 2.6623 12 1 5.8206 1.4766 3.8589 13 6 4.2379 1.5391 -1.2642 14 6 4.4893 0.1555 -1.8060 15 8 4.0947 -0.8155 -1.1960 16 7 5.1473 -0.0025 -2.9715 17 6 5.6236 1.1706 -3.7087 18 6 5.3864 -1.3472 -3.5013 19 6 4.2357 -1.7502 -4.3869 20 6 4.1385 -1.5243 -5.7639 21 7 2.9994 -2.0159 -6.1793 22 7 2.3349 -2.5714 -5.0783 23 6 1.0249 -3.2268 -5.1031 24 6 3.1167 -2.4005 -3.9918 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 7.0518 0.3750 0.0662 33 1 5.1903 2.0416 -1.0948 34 1 3.6491 2.1093 -1.9827 35 1 6.6334 1.4195 -3.3823 36 1 5.6307 0.9506 -4.7762 37 1 4.9611 2.0145 -3.5159 38 1 6.3095 -1.3506 -4.0810 39 1 5.4736 -2.0530 -2.6753 40 1 4.8768 -1.0304 -6.3781 41 1 1.1553 -4.2925 -5.2906 42 1 0.5294 -3.0848 -4.1427 43 1 0.4153 -2.7905 -5.8945 44 1 2.8888 -2.7224 -2.9864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123039504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:28 Heat of formation + Delta-G solvation = 78.246335 kcal Electronic energy + Delta-G solvation = -25194.108812 eV Core-core repulsion = 21763.901229 eV Total energy + Delta-G solvation = -3430.207583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93839 -38.38596 -35.80779 -34.25847 -33.00933 -32.80154 -30.78897 -30.34759 -27.96495 -26.69019 -25.95861 -25.43424 -24.07896 -21.94379 -20.82254 -20.25585 -19.86517 -18.27236 -16.71047 -16.53567 -15.55131 -15.37373 -15.15912 -14.71141 -14.38938 -14.15050 -14.08116 -13.55017 -13.07053 -12.89555 -12.77134 -12.66506 -12.51553 -12.09171 -12.06013 -11.83901 -11.71195 -11.40152 -11.18414 -11.06051 -10.89348 -10.71294 -10.50796 -10.38044 -10.19349 -9.95298 -9.77724 -9.52166 -9.20032 -8.69068 -8.36355 -7.96035 -7.52884 -6.70318 -5.73007 -3.12049 2.11785 2.70183 2.99569 3.43334 3.49476 3.51016 4.29841 4.40034 4.61150 4.66881 5.12081 5.17824 5.25891 5.35727 5.42974 5.59797 5.64791 5.74225 5.77992 5.83423 5.87549 6.00527 6.09175 6.18611 6.30271 6.33066 6.33416 6.42966 6.56928 6.58959 6.64804 6.71613 6.86876 6.95151 7.17031 7.22318 7.39288 7.49647 7.66468 7.80837 7.89635 8.42113 8.71654 9.27039 9.82348 9.98059 10.36805 11.33559 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005643 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.669227 B = 4960.655701 C = 5939.845831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.152 3.848 4 N -0.580 5.580 5 C -0.239 4.239 6 H 0.072 0.928 7 C 0.008 3.992 8 N -0.907 5.907 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.167 3.833 14 C 0.539 3.461 15 O -0.539 6.539 16 N -0.627 5.627 17 C 0.097 3.903 18 C 0.198 3.802 19 C -0.244 4.244 20 C 0.055 3.945 21 N -0.311 5.311 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.079 3.921 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.253 0.747 33 H 0.117 0.883 34 H 0.021 0.979 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.177 0.823 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -2.698 -10.507 12.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.026 3.974 4 N -0.299 5.299 5 C -0.368 4.368 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.037 3.963 14 C 0.329 3.671 15 O -0.414 6.414 16 N -0.365 5.365 17 C -0.047 4.047 18 C 0.073 3.927 19 C -0.257 4.257 20 C -0.132 4.132 21 N -0.132 5.132 22 N -0.166 5.166 23 C -0.037 4.037 24 C -0.068 4.068 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.194 0.806 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.437 -3.470 -11.109 13.300 hybrid contribution 1.133 -0.375 1.477 1.899 sum -5.304 -3.845 -9.632 11.649 Atomic orbital electron populations 1.21790 0.98412 1.00021 1.00364 1.22147 0.92158 1.00586 1.03011 1.20889 0.84611 0.93908 0.98033 1.43791 0.99513 1.84210 1.02406 1.19206 0.95263 1.36223 0.86146 0.91036 1.24898 0.97839 0.99294 0.96797 1.69667 1.11423 1.50665 1.23658 0.86211 0.78339 0.78266 0.83386 1.21696 1.21966 1.20814 1.20785 0.98282 0.91623 0.85620 1.21906 0.74370 0.94050 0.76805 1.90434 1.51782 1.42146 1.57004 1.48091 1.60300 1.04563 1.23505 1.21455 0.99357 0.88832 0.95052 1.19302 0.92236 0.86097 0.95071 1.20684 1.00634 1.09823 0.94525 1.23716 0.95387 0.99361 0.94723 1.77234 1.08475 1.17805 1.09725 1.48427 1.16351 1.46046 1.05762 1.21774 0.80664 0.97114 1.04146 1.22506 0.91675 0.99621 0.92980 0.94135 0.93645 0.93957 0.91679 0.92318 0.94199 0.94912 0.93653 0.86539 0.96144 0.93536 0.93156 0.92021 0.91556 0.90187 0.80555 0.91176 0.89595 0.89679 0.80889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.14 -2.87 5.67 -26.73 -0.15 -3.02 16 3 C 0.15 3.26 5.72 -4.04 -0.02 3.23 16 4 N -0.58 -14.42 2.07 -174.60 -0.36 -14.78 16 5 C -0.24 -6.50 9.70 -15.06 -0.15 -6.65 16 6 H 0.07 1.92 7.84 -52.48 -0.41 1.51 16 7 C 0.01 0.23 5.41 -17.43 -0.09 0.13 16 8 N -0.91 -24.86 8.21 55.49 0.46 -24.41 16 9 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.17 3.89 4.02 -5.19 -0.02 3.87 16 14 C 0.54 12.41 5.63 -10.99 -0.06 12.35 16 15 O -0.54 -14.03 13.47 5.56 0.07 -13.96 16 16 N -0.63 -11.94 2.86 -182.95 -0.52 -12.46 16 17 C 0.10 1.50 10.25 59.85 0.61 2.11 16 18 C 0.20 3.39 5.89 -5.20 -0.03 3.36 16 19 C -0.24 -3.93 5.68 -105.05 -0.60 -4.52 16 20 C 0.05 0.80 11.96 -17.36 -0.21 0.59 16 21 N -0.31 -4.88 12.58 30.62 0.39 -4.50 16 22 N -0.38 -5.59 4.01 -68.16 -0.27 -5.86 16 23 C 0.10 1.04 11.47 59.85 0.69 1.72 16 24 C 0.08 1.26 11.40 -17.22 -0.20 1.06 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.47 6.38 -51.93 -0.33 1.14 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.04 0.83 8.08 -51.92 -0.42 0.41 16 31 H 0.03 0.64 7.84 -51.93 -0.41 0.24 16 32 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.12 2.94 6.21 -51.92 -0.32 2.61 16 34 H 0.02 0.44 7.12 -51.93 -0.37 0.07 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 38 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 40 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -32.52 359.81 -6.89 -39.41 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.18 Total: 1.77 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 0.14 Total: 12.23 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.32 Total: -62.01 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.07 Total: -13.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.52 -6.89 -39.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123039504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.655 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds