Wall clock time and date at job start Tue Mar 31 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 N 1.46504 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00259 * 274.37694 * 4 3 2 6 6 H 1.08003 * 120.00047 * 337.76509 * 5 4 3 7 7 C 1.38810 * 119.99868 * 157.77108 * 5 4 3 8 8 N 1.31619 * 120.00258 * 7.76346 * 7 5 4 9 9 Si 1.86803 * 119.99736 * 187.76264 * 7 5 4 10 10 H 1.48494 * 109.47343 * 90.00339 * 9 7 5 11 11 H 1.48506 * 109.46764 * 210.00106 * 9 7 5 12 12 H 1.48499 * 109.47211 * 329.99506 * 9 7 5 13 13 C 1.46502 * 119.99498 * 94.37250 * 4 3 2 14 14 C 1.50703 * 109.47219 * 269.99934 * 13 4 3 15 15 O 1.21277 * 119.99588 * 0.02562 * 14 13 4 16 16 N 1.34774 * 119.99982 * 179.72259 * 14 13 4 17 17 C 1.46508 * 120.00018 * 0.28242 * 16 14 13 18 18 C 1.46498 * 120.00128 * 180.27684 * 16 14 13 19 19 C 1.50698 * 109.47136 * 90.00346 * 18 16 14 20 20 C 1.39873 * 126.04128 * 90.02485 * 19 18 16 21 21 N 1.30838 * 108.20264 * 179.97438 * 20 19 18 22 22 N 1.40085 * 108.20536 * 359.97438 * 21 20 19 23 23 C 1.46501 * 126.03630 * 179.97438 * 22 21 20 24 24 C 1.34943 * 107.92629 * 359.76201 * 22 21 20 25 25 H 1.08997 * 109.47560 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47349 * 299.99866 * 1 2 3 27 27 H 1.09001 * 109.47268 * 59.99489 * 1 2 3 28 28 H 1.08998 * 109.47233 * 240.00139 * 2 1 3 29 29 H 1.08997 * 109.47191 * 119.99760 * 2 1 3 30 30 H 1.09010 * 109.47082 * 60.00438 * 3 2 1 31 31 H 1.08994 * 109.47830 * 300.00140 * 3 2 1 32 32 H 0.97006 * 119.99999 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47149 * 150.00238 * 13 4 3 34 34 H 1.08996 * 109.47068 * 30.00277 * 13 4 3 35 35 H 1.08999 * 109.46751 * 89.99384 * 17 16 14 36 36 H 1.08999 * 109.46789 * 209.99428 * 17 16 14 37 37 H 1.09003 * 109.46666 * 329.99481 * 17 16 14 38 38 H 1.08994 * 109.47500 * 210.00368 * 18 16 14 39 39 H 1.08999 * 109.47195 * 330.00601 * 18 16 14 40 40 H 1.07995 * 125.89626 * 0.02562 * 20 19 18 41 41 H 1.08997 * 109.47023 * 89.97679 * 23 22 21 42 42 H 1.09000 * 109.47182 * 209.97945 * 23 22 21 43 43 H 1.09001 * 109.46867 * 329.98141 * 23 22 21 44 44 H 1.08000 * 126.12821 * 180.23810 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3523 1.1833 6 1 3.7090 1.6366 2.1080 7 6 5.4999 0.8954 1.1937 8 7 6.1359 0.6946 0.0589 9 14 6.3612 0.5657 2.8182 10 1 6.1290 -0.8435 3.2245 11 1 7.8190 0.8022 2.6623 12 1 5.8206 1.4766 3.8589 13 6 4.2379 1.5391 -1.2642 14 6 4.4893 0.1555 -1.8060 15 8 4.0947 -0.8155 -1.1960 16 7 5.1473 -0.0025 -2.9715 17 6 5.6236 1.1706 -3.7087 18 6 5.3864 -1.3472 -3.5013 19 6 4.2357 -1.7502 -4.3869 20 6 4.1385 -1.5243 -5.7639 21 7 2.9994 -2.0159 -6.1793 22 7 2.3349 -2.5714 -5.0783 23 6 1.0249 -3.2268 -5.1031 24 6 3.1167 -2.4005 -3.9918 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 7.0518 0.3750 0.0662 33 1 5.1903 2.0416 -1.0948 34 1 3.6491 2.1093 -1.9827 35 1 6.6334 1.4195 -3.3823 36 1 5.6307 0.9506 -4.7762 37 1 4.9611 2.0145 -3.5159 38 1 6.3095 -1.3506 -4.0810 39 1 5.4736 -2.0530 -2.6753 40 1 4.8768 -1.0304 -6.3781 41 1 1.1553 -4.2925 -5.2906 42 1 0.5294 -3.0848 -4.1427 43 1 0.4153 -2.7905 -5.8945 44 1 2.8888 -2.7224 -2.9864 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123039504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:27 Heat of formation + Delta-G solvation = 59.029960 kcal Electronic energy + Delta-G solvation = -25194.942097 eV Core-core repulsion = 21763.901229 eV Total energy + Delta-G solvation = -3431.040868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.10079 -40.07862 -37.53865 -35.87885 -34.59905 -34.07948 -32.44153 -31.84675 -29.33365 -28.14701 -27.23015 -27.20088 -25.49677 -23.66900 -21.92962 -21.80378 -21.29532 -19.90712 -18.58596 -17.78601 -17.16562 -17.02086 -16.63921 -16.09690 -15.90746 -15.71740 -15.37418 -15.18941 -14.59089 -14.41399 -14.07384 -13.96409 -13.60973 -13.47941 -13.43321 -13.17755 -13.14608 -12.97114 -12.85728 -12.74039 -12.56158 -12.43367 -12.17074 -12.05506 -11.81459 -11.71536 -11.53637 -11.22763 -10.66600 -10.32828 -10.04962 -9.37838 -9.04516 -8.62717 -7.78664 -5.17550 0.94073 1.45383 1.50449 1.54955 1.68780 1.79580 2.50306 2.68249 2.93303 3.42347 3.67485 3.76956 4.00012 4.27198 4.30729 4.35866 4.40076 4.45356 4.52569 4.56874 4.63493 4.68753 4.72375 4.80265 4.81265 4.90159 4.91745 4.96993 5.12516 5.14782 5.22478 5.27798 5.35905 5.49367 5.51820 5.67576 5.75577 5.79388 6.10494 6.20310 6.42795 6.74982 7.05114 7.27592 7.90382 8.21210 8.37180 9.24234 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.015546 B = 0.005643 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.669227 B = 4960.655701 C = 5939.845831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.149 3.851 4 N -0.596 5.596 5 C -0.250 4.250 6 H 0.067 0.933 7 C -0.037 4.037 8 N -0.914 5.914 9 Si 0.959 3.041 10 H -0.304 1.304 11 H -0.292 1.292 12 H -0.271 1.271 13 C 0.169 3.831 14 C 0.538 3.462 15 O -0.578 6.578 16 N -0.627 5.627 17 C 0.094 3.906 18 C 0.203 3.797 19 C -0.256 4.256 20 C 0.060 3.940 21 N -0.327 5.327 22 N -0.382 5.382 23 C 0.095 3.905 24 C 0.067 3.933 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.209 0.791 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 -2.286 -12.003 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.023 3.977 4 N -0.317 5.317 5 C -0.380 4.380 6 H 0.085 0.915 7 C -0.232 4.232 8 N -0.562 5.562 9 Si 0.789 3.211 10 H -0.232 1.232 11 H -0.219 1.219 12 H -0.196 1.196 13 C 0.039 3.961 14 C 0.327 3.673 15 O -0.456 6.456 16 N -0.362 5.362 17 C -0.049 4.049 18 C 0.079 3.921 19 C -0.269 4.269 20 C -0.126 4.126 21 N -0.149 5.149 22 N -0.165 5.165 23 C -0.045 4.045 24 C -0.081 4.081 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.225 0.775 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.311 -3.041 -12.651 14.925 hybrid contribution 1.353 -0.510 1.892 2.381 sum -5.958 -3.550 -10.760 12.801 Atomic orbital electron populations 1.21677 0.94604 1.01358 1.01824 1.21926 0.95366 0.99247 1.00073 1.21033 0.82945 0.94542 0.99144 1.43981 1.00923 1.84499 1.02253 1.19377 0.95588 1.36055 0.87007 0.91496 1.25482 0.98654 0.99862 0.99170 1.69834 1.10860 1.51004 1.24455 0.85390 0.77445 0.77172 0.81054 1.23235 1.21867 1.19627 1.20701 0.97560 0.92145 0.85687 1.21745 0.74578 0.93295 0.77667 1.90414 1.53578 1.43021 1.58589 1.48054 1.59004 1.06465 1.22725 1.21647 0.99059 0.87531 0.96697 1.19285 0.94157 0.84315 0.94359 1.20599 1.00331 1.10718 0.95212 1.24126 0.95579 0.98776 0.94087 1.77200 1.09038 1.18340 1.10339 1.48751 1.17239 1.45585 1.04920 1.22120 0.79033 0.97986 1.05374 1.22471 0.92415 1.00093 0.93086 0.92932 0.92376 0.92218 0.94015 0.95857 0.93701 0.92931 0.94624 0.88628 0.93970 0.93645 0.89524 0.91894 0.88661 0.93570 0.77477 0.89370 0.88429 0.88454 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.91 71.98 0.71 -3.43 16 2 C -0.13 -5.21 5.67 30.59 0.17 -5.03 16 3 C 0.15 6.30 5.72 86.38 0.49 6.80 16 4 N -0.60 -29.91 2.07 -706.31 -1.46 -31.37 16 5 C -0.25 -13.81 9.70 84.03 0.81 -12.99 16 6 H 0.07 3.65 7.84 -2.91 -0.02 3.63 16 7 C -0.04 -2.04 5.41 84.86 0.46 -1.58 16 8 N -0.91 -51.04 8.21 21.65 0.18 -50.86 16 9 Si 0.96 46.30 29.56 68.60 2.03 48.33 16 10 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.17 7.89 4.02 85.63 0.34 8.24 16 14 C 0.54 25.02 5.63 87.66 0.49 25.51 16 15 O -0.58 -31.03 13.47 -3.02 -0.04 -31.07 16 16 N -0.63 -23.50 2.86 -851.13 -2.43 -25.93 16 17 C 0.09 2.71 10.25 127.77 1.31 4.02 16 18 C 0.20 6.86 5.89 85.63 0.50 7.36 16 19 C -0.26 -7.97 5.68 -20.14 -0.11 -8.09 16 20 C 0.06 1.62 11.96 85.24 1.02 2.64 16 21 N -0.33 -9.60 12.58 -57.02 -0.72 -10.32 16 22 N -0.38 -10.64 4.01 -369.56 -1.48 -12.12 16 23 C 0.09 1.71 11.47 127.77 1.47 3.18 16 24 C 0.07 2.13 11.40 83.54 0.95 3.08 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.91 6.38 -2.39 -0.02 1.89 16 29 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 1.83 8.08 -2.38 -0.02 1.81 16 31 H 0.05 1.99 7.84 -2.39 -0.02 1.97 16 32 H 0.24 13.65 8.31 -92.70 -0.77 12.88 16 33 H 0.10 4.88 6.21 -2.38 -0.01 4.86 16 34 H 0.04 1.76 7.12 -2.39 -0.02 1.74 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.87 8.07 -2.39 -0.02 1.86 16 37 H 0.06 1.80 6.43 -2.39 -0.02 1.78 16 38 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 39 H 0.05 1.87 7.42 -2.39 -0.02 1.85 16 40 H 0.21 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.16 5.46 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -71.35 359.81 5.67 -65.68 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.97 Total: 17.96 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 8.63 Total: 29.71 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.91 Total: -130.61 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.04 Total: -31.07 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.35 5.67 -65.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123039504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.714 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds