Wall clock time and date at job start Tue Mar 31 2020 03:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46956 * 111.00257 * 2 1 4 4 C 1.53050 * 109.36436 * 176.80890 * 3 2 1 5 5 N 1.46959 * 109.36009 * 58.40462 * 4 3 2 6 6 C 1.46903 * 110.99961 * 176.80888 * 5 4 3 7 7 C 1.50697 * 109.47217 * 190.16668 * 6 5 4 8 8 O 1.21286 * 120.00157 * 6.26391 * 7 6 5 9 9 N 1.34780 * 119.99916 * 186.25854 * 7 6 5 10 10 C 1.46502 * 120.00044 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47179 * 89.99596 * 10 9 7 12 12 H 1.08003 * 120.00087 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99964 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00062 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99954 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47327 * 90.00252 * 15 13 11 17 17 H 1.48502 * 109.46782 * 210.00032 * 15 13 11 18 18 H 1.48499 * 109.46980 * 330.00025 * 15 13 11 19 19 C 1.46498 * 119.99805 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46884 * 90.00146 * 19 9 7 21 21 C 1.47206 * 109.46805 * 179.97438 * 20 19 9 22 22 N 8.79997 * 170.46815 * 112.53046 * 2 1 3 23 23 C 1.46961 * 110.88330 * 300.67490 * 5 4 3 24 24 C 1.46956 * 110.99828 * 236.19835 * 2 1 3 25 25 H 1.09002 * 109.47034 * 183.80321 * 1 2 3 26 26 H 1.09007 * 109.46820 * 303.79773 * 1 2 3 27 27 H 1.08994 * 109.47551 * 63.79661 * 1 2 3 28 28 H 1.08994 * 109.48814 * 296.78371 * 3 2 1 29 29 H 1.09004 * 109.48332 * 56.84529 * 3 2 1 30 30 H 1.08992 * 109.49287 * 298.43737 * 4 3 2 31 31 H 1.08998 * 109.48979 * 178.36731 * 4 3 2 32 32 H 1.08996 * 109.46872 * 310.16951 * 6 5 4 33 33 H 1.09007 * 109.47034 * 70.16859 * 6 5 4 34 34 H 1.08996 * 109.47156 * 210.00365 * 10 9 7 35 35 H 1.09002 * 109.46748 * 330.00174 * 10 9 7 36 36 H 0.96998 * 119.99724 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46730 * 210.00073 * 19 9 7 38 38 H 1.08994 * 109.47449 * 330.00073 * 19 9 7 39 39 H 1.08994 * 109.46846 * 299.99494 * 20 19 9 40 40 H 1.09004 * 109.47098 * 59.99842 * 20 19 9 41 41 H 1.09004 * 109.48485 * 299.35798 * 23 5 4 42 42 H 1.08991 * 109.49301 * 179.29071 * 23 5 4 43 43 H 1.09002 * 109.49324 * 303.15728 * 24 2 1 44 44 H 1.09000 * 109.48683 * 63.20121 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0804 5 7 4.0500 0.5658 -1.0598 6 6 5.5191 0.5657 -1.0598 7 6 6.0213 -0.0038 -2.3615 8 8 5.2391 -0.2675 -3.2501 9 7 7.3399 -0.2201 -2.5382 10 6 7.8283 -0.7733 -3.8039 11 6 8.1418 0.3519 -4.7561 12 1 7.9927 1.3765 -4.4491 13 6 8.6201 0.0732 -6.0189 14 7 8.8022 -1.1746 -6.3925 15 14 9.0095 1.4679 -7.1990 16 1 10.4245 1.8832 -7.0250 17 1 8.7964 1.0089 -8.5952 18 1 8.1169 2.6203 -6.9151 19 6 8.2847 0.0980 -1.4648 20 6 8.4652 -1.1262 -0.5649 21 6 9.4150 -0.8068 0.5134 22 7 10.1475 -0.5584 1.3460 23 6 3.5234 -0.8062 -1.0598 24 6 1.9956 -0.7633 -1.1401 25 1 -0.3633 -1.0254 0.0682 26 1 -0.3633 0.5717 0.8541 27 1 -0.3634 0.4537 -0.9220 28 1 1.6938 1.8773 -0.9173 29 1 1.6013 1.9128 0.8603 30 1 3.8253 0.8478 1.0106 31 1 3.9179 2.3447 0.0513 32 1 5.8824 1.5870 -0.9458 33 1 5.8824 -0.0438 -0.2323 34 1 8.7305 -1.3569 -3.6212 35 1 7.0624 -1.4150 -4.2394 36 1 9.1384 -1.3706 -7.2810 37 1 9.2458 0.3759 -1.8973 38 1 7.8979 0.9288 -0.8747 39 1 7.5040 -1.4041 -0.1325 40 1 8.8519 -1.9571 -1.1551 41 1 3.8253 -1.3116 -0.1424 42 1 3.9177 -1.3471 -1.9200 43 1 1.6012 -1.7790 -1.1110 44 1 1.6934 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154302822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:59 Heat of formation + Delta-G solvation = 12.689054 kcal Electronic energy + Delta-G solvation = -24132.089802 eV Core-core repulsion = 20699.039442 eV Total energy + Delta-G solvation = -3433.050360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.81987 -38.60731 -36.85522 -35.47155 -34.94826 -32.87588 -30.96894 -30.80262 -29.74886 -27.53576 -25.74062 -24.00912 -23.65273 -23.42344 -22.21309 -19.80682 -18.52331 -17.60163 -16.72934 -16.43731 -16.12028 -15.53009 -15.31059 -15.08306 -14.89273 -14.70094 -14.38147 -14.18386 -13.99679 -13.69000 -13.42603 -12.92283 -12.58705 -12.53093 -12.41973 -12.26843 -12.16036 -11.84803 -11.75295 -11.50728 -11.27797 -11.25904 -11.01030 -10.90150 -10.80846 -10.80120 -10.59763 -10.17706 -9.68445 -8.98464 -8.50047 -8.46495 -8.18712 -7.80997 -6.08058 -4.12366 2.71638 2.79817 3.28978 3.31997 3.36671 3.41227 3.50644 3.82242 3.93990 4.27617 4.43433 4.80580 4.90843 4.94885 5.01002 5.12660 5.14381 5.25815 5.26133 5.28947 5.31977 5.42658 5.44548 5.47849 5.54990 5.58762 5.67391 5.73433 5.81840 5.83936 6.03364 6.06255 6.11067 6.76832 6.86141 6.92240 7.10371 7.14491 7.36872 7.45252 7.56372 7.88507 8.18483 8.28357 8.86504 9.02891 9.53301 11.00041 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.004469 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.383756 B = 6264.308766 C = 7914.368093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.057 3.943 4 C 0.058 3.942 5 N -0.521 5.521 6 C 0.035 3.965 7 C 0.508 3.492 8 O -0.514 6.514 9 N -0.600 5.600 10 C 0.246 3.754 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.118 3.882 20 C -0.050 4.050 21 C 0.217 3.783 22 N -0.446 5.446 23 C 0.056 3.944 24 C 0.059 3.941 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.035 0.965 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 1.465 14.114 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.071 4.071 4 C -0.071 4.071 5 N -0.246 5.246 6 C -0.096 4.096 7 C 0.294 3.706 8 O -0.388 6.388 9 N -0.333 5.333 10 C 0.128 3.872 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.101 4.101 22 N -0.123 5.123 23 C -0.072 4.072 24 C -0.069 4.069 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.053 0.947 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.070 1.568 14.684 17.874 hybrid contribution 0.080 0.681 -1.017 1.226 sum -9.989 2.249 13.667 17.077 Atomic orbital electron populations 1.22329 0.87443 1.02105 1.00402 1.62207 1.07669 1.13976 1.43447 1.22144 0.94533 0.89434 1.00968 1.22167 0.94457 0.98571 0.91868 1.61759 1.05958 1.14789 1.42098 1.22104 0.88747 1.02418 0.96358 1.20185 0.82528 0.79246 0.88667 1.90676 1.54574 1.50177 1.43400 1.48237 1.04976 1.63666 1.16379 1.19321 0.95187 0.94429 0.78301 1.21424 1.43538 0.93259 0.98407 0.92380 1.24909 0.95485 0.95669 0.97895 1.69918 1.45681 1.17648 1.20071 0.86525 0.78472 0.82327 0.80279 1.20687 1.21131 1.19872 1.21282 0.96570 0.94059 0.88905 1.19914 0.95665 1.02381 0.91237 1.29133 0.93850 0.93183 0.93941 1.81226 1.10624 1.08905 1.11545 1.22280 0.94081 0.89206 1.01629 1.22155 0.94838 0.98163 0.91767 0.91430 0.91597 0.95568 0.93787 0.90494 0.94113 0.90249 0.88268 0.92618 0.94813 0.93604 0.92705 0.88739 0.90812 0.87757 0.86457 0.94681 0.88318 0.90437 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.80 16 2 N -0.55 -6.06 4.97 -242.76 -1.21 -7.26 16 3 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 4 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 5 N -0.52 -7.21 4.40 -235.91 -1.04 -8.25 16 6 C 0.03 0.46 3.91 -4.98 -0.02 0.44 16 7 C 0.51 9.23 7.23 -10.98 -0.08 9.15 16 8 O -0.51 -11.73 14.26 5.55 0.08 -11.65 16 9 N -0.60 -10.76 2.46 -175.06 -0.43 -11.19 16 10 C 0.25 5.76 5.16 -5.19 -0.03 5.74 16 11 C -0.53 -14.03 9.39 -34.44 -0.32 -14.36 16 12 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.12 1.54 5.08 -4.04 -0.02 1.52 16 20 C -0.05 -0.52 5.97 -29.51 -0.18 -0.69 16 21 C 0.22 2.59 15.44 -20.74 -0.32 2.27 16 22 N -0.45 -6.51 18.54 42.17 0.78 -5.73 16 23 C 0.06 0.76 5.27 -3.76 -0.02 0.74 16 24 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.50 8.13 -51.92 -0.42 0.07 16 27 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.10 1.18 7.60 -51.93 -0.39 0.79 16 33 H 0.06 0.60 6.83 -51.93 -0.35 0.25 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 35 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.07 0.79 6.61 -51.93 -0.34 0.45 16 39 H 0.10 0.88 7.12 -51.93 -0.37 0.51 16 40 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 1.58 6.09 -51.93 -0.32 1.27 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.70 361.53 -8.41 -41.11 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -7.19 Total: -3.13 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.57 Total: 9.12 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -1.16 Total: -57.14 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.70 -8.41 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154302822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.803 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds