Wall clock time and date at job start Tue Mar 31 2020 03:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46956 * 111.00257 * 2 1 4 4 C 1.53050 * 109.36436 * 176.80890 * 3 2 1 5 5 N 1.46959 * 109.36009 * 58.40462 * 4 3 2 6 6 C 1.46903 * 110.99961 * 176.80888 * 5 4 3 7 7 C 1.50697 * 109.47217 * 190.16668 * 6 5 4 8 8 O 1.21286 * 120.00157 * 6.26391 * 7 6 5 9 9 N 1.34780 * 119.99916 * 186.25854 * 7 6 5 10 10 C 1.46502 * 120.00044 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47179 * 89.99596 * 10 9 7 12 12 H 1.08003 * 120.00087 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99964 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00062 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99954 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47327 * 90.00252 * 15 13 11 17 17 H 1.48502 * 109.46782 * 210.00032 * 15 13 11 18 18 H 1.48499 * 109.46980 * 330.00025 * 15 13 11 19 19 C 1.46498 * 119.99805 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46884 * 90.00146 * 19 9 7 21 21 C 1.47206 * 109.46805 * 179.97438 * 20 19 9 22 22 N 8.79997 * 170.46815 * 112.53046 * 2 1 3 23 23 C 1.46961 * 110.88330 * 300.67490 * 5 4 3 24 24 C 1.46956 * 110.99828 * 236.19835 * 2 1 3 25 25 H 1.09002 * 109.47034 * 183.80321 * 1 2 3 26 26 H 1.09007 * 109.46820 * 303.79773 * 1 2 3 27 27 H 1.08994 * 109.47551 * 63.79661 * 1 2 3 28 28 H 1.08994 * 109.48814 * 296.78371 * 3 2 1 29 29 H 1.09004 * 109.48332 * 56.84529 * 3 2 1 30 30 H 1.08992 * 109.49287 * 298.43737 * 4 3 2 31 31 H 1.08998 * 109.48979 * 178.36731 * 4 3 2 32 32 H 1.08996 * 109.46872 * 310.16951 * 6 5 4 33 33 H 1.09007 * 109.47034 * 70.16859 * 6 5 4 34 34 H 1.08996 * 109.47156 * 210.00365 * 10 9 7 35 35 H 1.09002 * 109.46748 * 330.00174 * 10 9 7 36 36 H 0.96998 * 119.99724 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46730 * 210.00073 * 19 9 7 38 38 H 1.08994 * 109.47449 * 330.00073 * 19 9 7 39 39 H 1.08994 * 109.46846 * 299.99494 * 20 19 9 40 40 H 1.09004 * 109.47098 * 59.99842 * 20 19 9 41 41 H 1.09004 * 109.48485 * 299.35798 * 23 5 4 42 42 H 1.08991 * 109.49301 * 179.29071 * 23 5 4 43 43 H 1.09002 * 109.49324 * 303.15728 * 24 2 1 44 44 H 1.09000 * 109.48683 * 63.20121 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0804 5 7 4.0500 0.5658 -1.0598 6 6 5.5191 0.5657 -1.0598 7 6 6.0213 -0.0038 -2.3615 8 8 5.2391 -0.2675 -3.2501 9 7 7.3399 -0.2201 -2.5382 10 6 7.8283 -0.7733 -3.8039 11 6 8.1418 0.3519 -4.7561 12 1 7.9927 1.3765 -4.4491 13 6 8.6201 0.0732 -6.0189 14 7 8.8022 -1.1746 -6.3925 15 14 9.0095 1.4679 -7.1990 16 1 10.4245 1.8832 -7.0250 17 1 8.7964 1.0089 -8.5952 18 1 8.1169 2.6203 -6.9151 19 6 8.2847 0.0980 -1.4648 20 6 8.4652 -1.1262 -0.5649 21 6 9.4150 -0.8068 0.5134 22 7 10.1475 -0.5584 1.3460 23 6 3.5234 -0.8062 -1.0598 24 6 1.9956 -0.7633 -1.1401 25 1 -0.3633 -1.0254 0.0682 26 1 -0.3633 0.5717 0.8541 27 1 -0.3634 0.4537 -0.9220 28 1 1.6938 1.8773 -0.9173 29 1 1.6013 1.9128 0.8603 30 1 3.8253 0.8478 1.0106 31 1 3.9179 2.3447 0.0513 32 1 5.8824 1.5870 -0.9458 33 1 5.8824 -0.0438 -0.2323 34 1 8.7305 -1.3569 -3.6212 35 1 7.0624 -1.4150 -4.2394 36 1 9.1384 -1.3706 -7.2810 37 1 9.2458 0.3759 -1.8973 38 1 7.8979 0.9288 -0.8747 39 1 7.5040 -1.4041 -0.1325 40 1 8.8519 -1.9571 -1.1551 41 1 3.8253 -1.3116 -0.1424 42 1 3.9177 -1.3471 -1.9200 43 1 1.6012 -1.7790 -1.1110 44 1 1.6934 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154302822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:59 Heat of formation + Delta-G solvation = -11.032618 kcal Electronic energy + Delta-G solvation = -24133.118451 eV Core-core repulsion = 20699.039442 eV Total energy + Delta-G solvation = -3434.079009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04308 -39.70544 -37.95642 -36.71373 -36.09402 -34.81859 -32.15218 -31.82957 -30.85346 -29.07991 -26.94545 -25.28345 -24.72225 -24.49788 -23.58108 -20.73114 -19.89666 -18.77846 -18.31356 -17.93282 -17.27558 -16.79496 -16.48709 -16.14814 -15.96890 -15.76724 -15.62143 -15.39856 -15.11279 -14.81011 -14.52660 -14.28585 -14.04824 -13.57764 -13.51688 -13.36824 -13.23316 -13.14963 -12.91296 -12.79918 -12.66204 -12.49770 -12.43944 -12.19675 -12.15369 -11.88521 -11.80001 -11.68637 -11.61622 -10.56436 -10.43631 -9.44782 -9.36992 -9.13751 -8.15989 -6.27882 1.40236 1.42828 1.52095 1.69957 1.84508 1.96226 2.25202 2.45292 2.93483 3.02567 3.14994 3.20735 3.80412 3.93375 4.07296 4.13373 4.14434 4.23014 4.29755 4.36311 4.45926 4.55153 4.59531 4.64952 4.65585 4.72811 4.85438 4.89798 4.95147 5.02339 5.04596 5.07431 5.12102 5.15532 5.36922 5.64578 5.88033 5.95420 5.98325 6.16175 6.17328 6.21988 6.61307 6.80058 6.86792 7.38016 7.61257 8.90495 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.004469 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.383756 B = 6264.308766 C = 7914.368093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.056 3.944 4 C 0.060 3.940 5 N -0.547 5.547 6 C 0.047 3.953 7 C 0.502 3.498 8 O -0.571 6.571 9 N -0.600 5.600 10 C 0.262 3.738 11 C -0.538 4.538 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.114 3.886 20 C -0.037 4.037 21 C 0.246 3.754 22 N -0.489 5.489 23 C 0.061 3.939 24 C 0.063 3.937 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 2.716 16.383 19.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.072 4.072 4 C -0.068 4.068 5 N -0.273 5.273 6 C -0.084 4.084 7 C 0.290 3.710 8 O -0.449 6.449 9 N -0.332 5.332 10 C 0.141 3.859 11 C -0.577 4.577 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.010 4.010 20 C -0.078 4.078 21 C -0.071 4.071 22 N -0.167 5.167 23 C -0.067 4.067 24 C -0.065 4.065 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.313 2.840 17.008 20.092 hybrid contribution 0.110 0.281 -1.724 1.750 sum -10.203 3.121 15.285 18.640 Atomic orbital electron populations 1.22402 0.86121 1.02931 1.00857 1.62259 1.08923 1.14173 1.42186 1.22229 0.94604 0.89193 1.01198 1.22247 0.94497 0.98944 0.91090 1.61691 1.06304 1.15092 1.44214 1.22059 0.88759 1.03702 0.93854 1.21140 0.81829 0.78064 0.89943 1.90656 1.55985 1.52473 1.45819 1.48106 1.06059 1.63266 1.15761 1.18755 0.93612 0.93129 0.80415 1.21767 1.42909 0.93749 0.99301 0.92925 1.25707 0.95588 0.97835 0.99643 1.70023 1.46697 1.19384 1.20527 0.85577 0.78773 0.79375 0.78057 1.19202 1.21085 1.19985 1.21503 0.95146 0.96322 0.88076 1.19829 0.96689 1.00987 0.90329 1.29154 0.92922 0.91868 0.93186 1.81272 1.12011 1.10230 1.13161 1.22124 0.94650 0.89237 1.00653 1.22067 0.94355 0.98799 0.91316 0.90690 0.89845 0.96151 0.95510 0.88024 0.92835 0.88755 0.86100 0.89082 0.94879 0.97924 0.92642 0.89822 0.87576 0.84908 0.86244 0.93315 0.91654 0.89429 0.96079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.60 127.69 1.23 1.62 16 2 N -0.55 -11.14 4.97 -921.94 -4.58 -15.72 16 3 C 0.06 1.05 5.62 86.31 0.49 1.53 16 4 C 0.06 1.12 5.61 86.31 0.48 1.60 16 5 N -0.55 -14.22 4.40 -900.28 -3.96 -18.18 16 6 C 0.05 1.12 3.91 85.56 0.33 1.45 16 7 C 0.50 18.04 7.23 87.66 0.63 18.67 16 8 O -0.57 -27.06 14.26 -3.05 -0.04 -27.10 16 9 N -0.60 -21.24 2.46 -826.15 -2.03 -23.27 16 10 C 0.26 12.61 5.16 85.63 0.44 13.05 16 11 C -0.54 -29.14 9.39 25.60 0.24 -28.90 16 12 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 13 C 0.01 0.63 5.46 84.65 0.46 1.09 16 14 N -0.93 -53.87 13.29 21.45 0.28 -53.58 16 15 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.11 2.71 5.08 86.38 0.44 3.15 16 20 C -0.04 -0.66 5.97 28.79 0.17 -0.49 16 21 C 0.25 5.23 15.44 89.44 1.38 6.61 16 22 N -0.49 -13.33 18.54 20.01 0.37 -12.96 16 23 C 0.06 1.62 5.27 86.31 0.45 2.08 16 24 C 0.06 1.52 5.62 86.31 0.49 2.01 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.03 8.13 -2.38 -0.02 1.01 16 27 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.40 8.13 -2.39 -0.02 1.38 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.12 2.40 7.60 -2.39 -0.02 2.38 16 33 H 0.09 1.55 6.83 -2.38 -0.02 1.53 16 34 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 35 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.08 2.21 8.07 -2.38 -0.02 2.19 16 38 H 0.11 1.87 6.61 -2.39 -0.02 1.86 16 39 H 0.13 1.70 7.12 -2.39 -0.02 1.68 16 40 H 0.12 2.19 8.14 -2.38 -0.02 2.18 16 41 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.07 2.17 6.09 -2.39 -0.01 2.16 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.14 361.53 0.28 -73.86 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 0.98 Total: 7.56 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 7.24 Total: 23.48 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -9.92 Total: -123.70 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.04 Total: -27.10 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.14 0.28 -73.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154302822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.827 kcal (2) G-P(sol) polarization free energy of solvation -74.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds