Wall clock time and date at job start Tue Mar 31 2020 03:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46974 * 2 1 4 4 C 1.46496 * 120.00321 * 269.99881 * 3 2 1 5 5 C 1.52998 * 109.47322 * 270.00454 * 4 3 2 6 6 C 1.53005 * 109.47152 * 175.00008 * 5 4 3 7 7 C 1.53002 * 109.46932 * 294.99641 * 5 4 3 8 8 C 1.34777 * 120.00065 * 90.00435 * 3 2 1 9 9 O 1.21588 * 120.00178 * 179.97438 * 8 3 2 10 10 N 1.34784 * 119.99964 * 359.97438 * 8 3 2 11 11 C 1.40194 * 120.00089 * 179.73143 * 10 8 3 12 12 C 1.40406 * 125.96886 * 359.70575 * 11 10 8 13 13 C 1.35248 * 107.86479 * 179.86930 * 12 11 10 14 14 N 1.34973 * 107.85666 * 0.39737 * 13 12 11 15 15 C 1.46493 * 125.97450 * 179.71554 * 14 13 12 16 16 C 1.50699 * 109.47474 * 125.02114 * 15 14 13 17 17 H 1.08003 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00130 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00132 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47176 * 89.99696 * 20 18 16 22 22 H 1.48498 * 109.47320 * 209.99900 * 20 18 16 23 23 H 1.48501 * 109.47206 * 330.00221 * 20 18 16 24 24 N 1.31201 * 125.97244 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.47024 * 299.99343 * 1 2 3 26 26 H 1.08998 * 109.47059 * 59.99769 * 1 2 3 27 27 H 1.08996 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47465 * 240.00023 * 2 1 3 29 29 H 1.09004 * 109.47636 * 119.99864 * 2 1 3 30 30 H 1.09004 * 109.47079 * 30.00272 * 4 3 2 31 31 H 1.08997 * 109.47484 * 150.00129 * 4 3 2 32 32 H 1.08995 * 109.47486 * 54.99524 * 5 4 3 33 33 H 1.08995 * 109.47320 * 59.99415 * 6 5 4 34 34 H 1.08998 * 109.46722 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46562 * 299.99724 * 6 5 4 36 36 H 1.09001 * 109.47160 * 180.02562 * 7 5 4 37 37 H 1.09007 * 109.47059 * 299.99797 * 7 5 4 38 38 H 1.08993 * 109.47343 * 60.00098 * 7 5 4 39 39 H 0.97000 * 119.99339 * 0.02562 * 10 8 3 40 40 H 1.07994 * 126.06894 * 0.02562 * 12 11 10 41 41 H 1.07997 * 126.07079 * 180.11741 * 13 12 11 42 42 H 1.09010 * 109.47209 * 245.01897 * 15 14 13 43 43 H 1.09003 * 109.47314 * 5.01247 * 15 14 13 44 44 H 0.96992 * 120.00393 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.7074 1.8314 -1.7104 6 6 3.9270 2.4471 -3.0938 7 6 4.6623 2.4801 -0.7062 8 6 2.2430 2.0166 1.1672 9 8 2.6487 3.1627 1.1672 10 7 2.0179 1.3813 2.3345 11 6 2.2570 2.0403 3.5486 12 6 2.7341 3.3527 3.6946 13 6 2.8261 3.6159 5.0180 14 7 2.4322 2.5123 5.6878 15 6 2.3828 2.3613 7.1441 16 6 0.9967 1.9398 7.5588 17 1 0.2291 1.7989 6.8122 18 6 0.7083 1.7341 8.8913 19 7 1.6431 1.9052 9.8005 20 14 -1.0100 1.2123 9.4054 21 1 -1.0954 -0.2702 9.4140 22 1 -1.2992 1.7328 10.7658 23 1 -2.0016 1.7595 8.4449 24 7 2.0796 1.5363 4.7469 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.9002 0.7596 -1.7549 33 1 3.7342 3.5189 -3.0493 34 1 4.9565 2.2762 -3.4082 35 1 3.2467 1.9850 -3.8091 36 1 5.6917 2.3092 -1.0211 37 1 4.4695 3.5520 -0.6617 38 1 4.5059 2.0416 0.2793 39 1 1.6946 0.4668 2.3344 40 1 2.9811 4.0323 2.8925 41 1 3.1602 4.5427 5.4603 42 1 3.1015 1.6031 7.4555 43 1 2.6302 3.3120 7.6166 44 1 1.4404 1.7601 10.7378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173361888.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:30 Heat of formation + Delta-G solvation = 29.658742 kcal Electronic energy + Delta-G solvation = -23909.552655 eV Core-core repulsion = 20477.238156 eV Total energy + Delta-G solvation = -3432.314499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.28055 -41.18930 -37.84312 -36.40443 -35.72533 -34.94706 -32.65734 -31.33311 -30.92110 -28.70651 -27.99294 -27.14798 -25.01977 -24.35448 -22.73771 -21.94227 -21.05071 -20.24431 -19.06152 -18.68147 -18.11388 -17.40250 -16.90556 -16.56004 -16.09033 -15.71710 -15.49554 -15.25490 -14.84955 -14.66022 -14.47330 -14.18491 -14.01813 -13.78209 -13.64067 -13.47816 -13.04876 -12.92501 -12.75438 -12.72894 -12.69262 -12.29249 -12.18908 -12.04495 -11.96605 -11.77233 -11.59721 -11.52173 -11.35925 -10.94495 -10.72090 -9.80499 -9.64150 -9.01484 -8.32551 -6.46942 1.08981 1.17492 1.38030 1.38750 1.50451 1.72862 2.06885 2.35532 2.43712 2.87778 2.98791 3.89810 3.96873 3.99097 4.04070 4.21411 4.27835 4.32563 4.45582 4.57816 4.68743 4.79498 4.83801 4.88169 4.90416 4.92462 4.95738 4.96120 5.02062 5.04841 5.11712 5.19869 5.27599 5.33984 5.43579 5.49954 5.56904 5.64865 5.77696 5.87846 5.98980 6.30142 6.61765 6.69602 7.13323 7.22984 7.46134 8.74906 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.003230 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.106102 B = 8665.579874 C = 9452.657639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.615 5.615 4 C 0.135 3.865 5 C -0.106 4.106 6 C -0.139 4.139 7 C -0.134 4.134 8 C 0.710 3.290 9 O -0.591 6.591 10 N -0.640 5.640 11 C 0.285 3.715 12 C -0.291 4.291 13 C 0.055 3.945 14 N -0.345 5.345 15 C 0.273 3.727 16 C -0.547 4.547 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.273 1.273 24 N -0.349 5.349 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.415 0.585 40 H 0.166 0.834 41 H 0.200 0.800 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -2.998 -25.281 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.351 5.351 4 C 0.013 3.987 5 C -0.126 4.126 6 C -0.197 4.197 7 C -0.191 4.191 8 C 0.411 3.589 9 O -0.469 6.469 10 N -0.293 5.293 11 C 0.029 3.971 12 C -0.322 4.322 13 C -0.093 4.093 14 N -0.127 5.127 15 C 0.154 3.846 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.180 5.180 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.254 0.746 40 H 0.184 0.816 41 H 0.217 0.783 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.196 -3.220 -24.339 24.580 hybrid contribution -0.514 0.056 0.538 0.746 sum 0.682 -3.164 -23.801 24.020 Atomic orbital electron populations 1.22214 0.95171 1.03481 1.02009 1.21821 0.94954 0.80977 1.04753 1.47245 1.68882 1.15265 1.03721 1.21637 0.96582 0.97686 0.82796 1.21508 0.94551 1.00823 0.95696 1.21730 1.02402 1.00785 0.94798 1.21729 0.98879 1.00344 0.98181 1.15780 0.78541 0.84217 0.80357 1.90823 1.52588 1.17588 1.85891 1.41657 1.69168 1.17420 1.01083 1.19117 0.99520 0.92680 0.85778 1.21673 1.17112 0.97342 0.96113 1.23143 0.99925 0.93757 0.92481 1.48809 1.48235 1.08685 1.07005 1.19323 0.97670 0.98292 0.69280 1.21399 0.96073 1.48128 0.92902 0.93013 1.25746 1.01955 0.94657 0.95868 1.69993 1.34945 1.49032 1.02017 0.85342 0.78674 0.78684 0.77678 1.19725 1.19645 1.19762 1.77229 1.28730 1.16008 0.96079 0.94697 0.91321 0.89386 0.86620 0.90925 0.87263 0.91572 0.90229 0.92984 0.92158 0.90767 0.92932 0.93817 0.95418 0.74637 0.81633 0.78317 0.96123 0.92410 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.47 16 2 C 0.10 1.29 5.89 86.38 0.51 1.80 16 3 N -0.61 -12.35 2.36 -839.84 -1.98 -14.33 16 4 C 0.14 2.20 5.00 86.38 0.43 2.63 16 5 C -0.11 -1.61 3.13 -10.79 -0.03 -1.65 16 6 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 7 C -0.13 -2.98 7.94 71.98 0.57 -2.41 16 8 C 0.71 21.26 6.83 179.05 1.22 22.49 16 9 O -0.59 -21.19 11.26 -3.99 -0.04 -21.24 16 10 N -0.64 -20.89 5.32 -321.22 -1.71 -22.59 16 11 C 0.28 11.90 8.11 133.32 1.08 12.99 16 12 C -0.29 -11.94 9.61 22.11 0.21 -11.73 16 13 C 0.06 2.27 11.44 83.52 0.96 3.23 16 14 N -0.35 -16.72 3.67 -351.84 -1.29 -18.01 16 15 C 0.27 14.47 6.26 85.63 0.54 15.01 16 16 C -0.55 -31.35 9.24 25.60 0.24 -31.11 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C 0.02 1.01 5.46 84.65 0.46 1.47 16 19 N -0.92 -52.73 13.29 21.45 0.28 -52.45 16 20 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 N -0.35 -16.77 12.42 -54.44 -0.68 -17.45 16 25 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.12 0.85 8.07 -2.39 -0.02 0.83 16 29 H 0.07 1.02 6.36 -2.38 -0.02 1.00 16 30 H 0.11 1.06 8.07 -2.38 -0.02 1.04 16 31 H 0.07 1.39 7.42 -2.39 -0.02 1.37 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.04 1.10 8.00 -2.38 -0.02 1.09 16 38 H 0.03 0.76 6.06 -2.39 -0.01 0.75 16 39 H 0.42 11.44 6.55 -92.71 -0.61 10.83 16 40 H 0.17 6.64 5.91 -2.91 -0.02 6.62 16 41 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 42 H 0.02 1.17 8.14 -2.38 -0.02 1.16 16 43 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 44 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -71.03 359.46 4.57 -66.46 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.38 Total: 23.23 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 7.58 Total: 10.35 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -5.37 Total: -124.83 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.03 4.57 -66.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173361888.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.115 kcal (2) G-P(sol) polarization free energy of solvation -71.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds