Wall clock time and date at job start Tue Mar 31 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46986 * 2 1 4 4 C 1.53001 * 109.46902 * 119.99190 * 2 1 3 5 5 C 1.52998 * 109.46975 * 65.00582 * 4 2 1 6 6 N 1.46905 * 109.46992 * 179.97438 * 5 4 2 7 7 C 1.46894 * 110.99826 * 66.04922 * 6 5 4 8 8 C 1.50700 * 109.46880 * 193.95296 * 7 6 5 9 9 H 1.07996 * 120.00488 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99832 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00440 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99917 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46720 * 60.00209 * 12 10 8 14 14 H 1.48489 * 109.47031 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47048 * 300.00686 * 12 10 8 16 16 C 1.46908 * 110.99734 * 189.99525 * 6 5 4 17 17 C 1.50702 * 109.46556 * 170.00118 * 16 6 5 18 18 N 1.32156 * 119.90994 * 270.25284 * 17 16 6 19 19 C 1.33110 * 120.08135 * 180.25935 * 18 17 16 20 20 N 1.37996 * 120.04309 * 179.77388 * 19 18 17 21 21 N 1.32852 * 119.91634 * 359.48972 * 19 18 17 22 22 C 1.32859 * 119.82311 * 0.26255 * 21 19 18 23 23 N 1.37994 * 120.04379 * 179.97438 * 22 21 19 24 24 N 1.32146 * 119.91331 * 90.00729 * 17 16 6 25 25 H 1.09001 * 109.46856 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47322 * 300.00233 * 1 2 3 27 27 H 1.08996 * 109.46792 * 60.00899 * 1 2 3 28 28 H 1.08999 * 109.47633 * 239.99339 * 2 1 3 29 29 H 1.08994 * 109.47012 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46586 * 299.99284 * 3 2 1 31 31 H 1.08999 * 109.47474 * 59.99242 * 3 2 1 32 32 H 1.08995 * 109.47706 * 304.99975 * 4 2 1 33 33 H 1.09009 * 109.47186 * 185.00194 * 4 2 1 34 34 H 1.09000 * 109.47361 * 59.99927 * 5 4 2 35 35 H 1.08996 * 109.47151 * 299.99725 * 5 4 2 36 36 H 1.09000 * 109.47421 * 313.94902 * 7 6 5 37 37 H 1.08996 * 109.47891 * 73.95310 * 7 6 5 38 38 H 0.96993 * 120.00460 * 179.97438 * 11 10 8 39 39 H 1.08999 * 109.46863 * 50.00642 * 16 6 5 40 40 H 1.08993 * 109.47345 * 290.00224 * 16 6 5 41 41 H 0.97001 * 120.00412 * 179.72722 * 20 19 18 42 42 H 0.97005 * 119.99862 * 359.44331 * 20 19 18 43 43 H 0.96996 * 120.00089 * 359.97438 * 23 22 21 44 44 H 0.97004 * 120.00115 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6353 -2.1953 1.1882 6 7 2.1254 -2.8878 2.3875 7 6 1.4522 -2.3904 3.5946 8 6 2.2010 -2.8579 4.8160 9 1 3.0879 -3.4642 4.7066 10 6 1.7535 -2.5115 6.0734 11 7 0.6731 -1.7737 6.2069 12 14 2.6813 -3.0916 7.5875 13 1 4.0716 -2.5714 7.5455 14 1 2.0008 -2.5887 8.8078 15 1 2.7088 -4.5761 7.6127 16 6 1.9662 -4.3424 2.2574 17 6 2.6947 -5.0300 3.3833 18 7 3.9625 -5.3726 3.2358 19 6 4.6078 -5.9847 4.2262 20 7 5.9303 -6.3462 4.0696 21 7 3.9787 -6.2420 5.3676 22 6 2.7055 -5.8917 5.5139 23 7 2.0474 -6.1573 6.6974 24 7 2.0655 -5.2844 4.5172 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -0.2615 2.1370 33 1 3.1264 -0.6442 1.2953 34 1 2.0700 -2.6549 0.3005 35 1 0.5490 -2.2723 1.1422 36 1 1.4313 -1.3008 3.5762 37 1 0.4320 -2.7729 3.6255 38 1 0.3582 -1.5303 7.0914 39 1 2.3802 -4.6694 1.3036 40 1 0.9074 -4.5973 2.3005 41 1 6.4012 -6.7887 4.7931 42 1 6.3880 -6.1616 3.2344 43 1 2.5142 -6.6003 7.4230 44 1 1.1179 -5.9008 6.8036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173538424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:01 Heat of formation + Delta-G solvation = 72.769693 kcal Electronic energy + Delta-G solvation = -24963.211393 eV Core-core repulsion = 21565.059076 eV Total energy + Delta-G solvation = -3398.152317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.186 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29384 -39.11966 -37.10285 -36.99105 -35.49482 -34.49241 -32.87956 -32.03299 -30.45469 -29.57856 -27.95784 -27.00370 -24.74210 -24.36396 -23.41741 -21.70392 -20.64992 -20.16540 -18.90670 -18.64432 -17.19637 -17.05558 -16.86748 -16.33241 -16.16731 -16.01029 -15.94938 -15.47379 -15.10714 -14.77029 -14.40857 -14.22669 -14.02216 -13.80365 -13.75961 -13.39332 -13.03011 -12.90851 -12.70324 -12.54029 -12.43328 -12.05133 -11.82604 -11.55127 -11.48021 -11.43406 -11.24273 -10.95912 -10.47061 -10.30121 -10.14291 -9.76721 -9.21601 -8.99320 -8.06904 -6.01752 0.40756 0.73740 1.36483 1.39530 1.48467 2.06428 2.47387 2.58537 2.96527 3.26712 3.32880 3.58854 3.93870 4.02532 4.11817 4.16608 4.23199 4.43667 4.59293 4.60193 4.75172 4.75748 4.86736 4.91824 5.02510 5.08791 5.18898 5.22771 5.32332 5.33600 5.38157 5.38803 5.55645 5.62554 5.69729 5.77523 5.83626 6.15919 6.24763 6.34196 6.42432 6.66700 6.72025 6.92809 7.08224 7.55179 7.93138 9.03090 Molecular weight = 294.19amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.005696 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.471454 B = 4914.658476 C = 5998.865462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.104 4.104 5 C 0.062 3.938 6 N -0.540 5.540 7 C 0.213 3.787 8 C -0.462 4.462 9 H 0.043 0.957 10 C 0.018 3.982 11 N -0.933 5.933 12 Si 0.882 3.118 13 H -0.317 1.317 14 H -0.301 1.301 15 H -0.172 1.172 16 C 0.135 3.865 17 C 0.441 3.559 18 N -0.638 5.638 19 C 0.598 3.402 20 N -0.794 5.794 21 N -0.670 5.670 22 C 0.605 3.395 23 N -0.792 5.792 24 N -0.590 5.590 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.028 0.972 36 H 0.008 0.992 37 H -0.033 1.033 38 H 0.254 0.746 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.422 0.578 42 H 0.424 0.576 43 H 0.420 0.580 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -6.270 -9.197 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.066 4.066 6 N -0.266 5.266 7 C 0.087 3.913 8 C -0.501 4.501 9 H 0.061 0.939 10 C -0.178 4.178 11 N -0.576 5.576 12 Si 0.711 3.289 13 H -0.246 1.246 14 H -0.228 1.228 15 H -0.095 1.095 16 C 0.005 3.995 17 C 0.163 3.837 18 N -0.373 5.373 19 C 0.230 3.770 20 N -0.347 5.347 21 N -0.413 5.413 22 C 0.238 3.762 23 N -0.344 5.344 24 N -0.322 5.322 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.026 0.974 37 H -0.015 1.015 38 H 0.063 0.937 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.254 0.746 42 H 0.257 0.743 43 H 0.254 0.746 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.643 -6.136 -9.015 11.853 hybrid contribution -0.340 0.051 1.822 1.854 sum 4.303 -6.084 -7.194 10.358 Atomic orbital electron populations 1.21878 0.95313 1.01728 1.01476 1.21062 0.95843 0.96375 0.97386 1.21812 1.01020 0.95597 1.01699 1.21578 1.00569 0.94329 0.97697 1.22163 0.97308 0.94764 0.92323 1.62019 1.58664 1.02059 1.03840 1.19409 0.90837 0.94073 0.86996 1.21143 1.08975 1.29179 0.90825 0.93900 1.25331 0.95694 0.95897 1.00928 1.70058 1.24844 1.39665 1.23024 0.87125 0.76418 0.85844 0.79553 1.24618 1.22805 1.09485 1.20638 0.96795 0.88098 0.93923 1.22604 0.85751 0.84847 0.90461 1.68330 1.11151 1.24195 1.33656 1.19381 0.88485 0.85006 0.84162 1.41448 1.05763 1.65768 1.21712 1.67823 1.10653 1.36370 1.26428 1.19122 0.84746 0.84415 0.87935 1.41828 1.15663 1.65028 1.11895 1.68685 1.41435 1.20036 1.02080 0.92787 0.94430 0.91093 0.89598 0.92602 0.91081 0.94066 0.94708 0.92445 0.89094 0.95383 0.97400 1.01537 0.93705 0.86963 0.93261 0.74581 0.74292 0.74646 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.95 71.98 0.64 -2.94 16 2 C -0.09 -2.19 2.92 -10.79 -0.03 -2.22 16 3 C -0.14 -3.30 9.19 71.98 0.66 -2.63 16 4 C -0.10 -3.47 4.64 30.59 0.14 -3.32 16 5 C 0.06 2.10 4.71 86.30 0.41 2.51 16 6 N -0.54 -23.17 4.56 -905.37 -4.13 -27.30 16 7 C 0.21 11.26 4.59 85.56 0.39 11.65 16 8 C -0.46 -26.05 6.02 25.60 0.15 -25.89 16 9 H 0.04 2.48 4.80 -2.91 -0.01 2.46 16 10 C 0.02 1.05 5.46 84.66 0.46 1.51 16 11 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 12 Si 0.88 43.14 28.08 68.60 1.93 45.07 16 13 H -0.32 -16.91 7.11 99.48 0.71 -16.20 16 14 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 15 H -0.17 -7.04 3.53 99.48 0.35 -6.69 16 16 C 0.14 5.27 5.44 85.56 0.47 5.74 16 17 C 0.44 18.99 4.69 138.54 0.65 19.64 16 18 N -0.64 -25.61 10.45 -190.35 -1.99 -27.60 16 19 C 0.60 22.04 8.76 261.25 2.29 24.33 16 20 N -0.79 -20.09 9.05 -59.46 -0.54 -20.63 16 21 N -0.67 -25.88 10.57 -200.59 -2.12 -28.00 16 22 C 0.61 24.51 6.68 261.25 1.75 26.26 16 23 N -0.79 -26.10 6.13 -59.46 -0.36 -26.47 16 24 N -0.59 -26.41 7.71 -190.35 -1.47 -27.88 16 25 H 0.05 1.34 6.56 -2.39 -0.02 1.32 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 1.40 6.31 -2.39 -0.02 1.39 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.09 2.55 7.93 -2.39 -0.02 2.53 16 35 H 0.03 0.96 6.54 -2.39 -0.02 0.95 16 36 H 0.01 0.46 5.98 -2.39 -0.01 0.45 16 37 H -0.03 -1.92 7.99 -2.39 -0.02 -1.94 16 38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.11 3.63 7.93 -2.39 -0.02 3.61 16 40 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 41 H 0.42 8.54 8.95 -92.71 -0.83 7.71 16 42 H 0.42 8.76 8.95 -92.70 -0.83 7.93 16 43 H 0.42 11.31 8.78 -92.71 -0.81 10.49 16 44 H 0.42 13.46 8.95 -92.71 -0.83 12.63 16 Total: -1.00 -73.49 342.64 -3.01 -76.51 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -2.60 Total: 38.24 kcal Atomic # 6 Polarization: 46.63 SS G_CDS: 7.98 Total: 54.62 kcal Atomic # 7 Polarization: -204.11 SS G_CDS: -10.33 Total: -214.43 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.93 Total: 45.07 kcal Total: -73.49 -3.01 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173538424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.276 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds