Wall clock time and date at job start Tue Mar 31 2020 03:36:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.46794 * 2 1
4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3
5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1
6 6 C 1.37878 * 120.00277 * 294.31785 * 4 2 1
7 7 N 1.31517 * 120.00046 * 155.04484 * 6 4 2
8 8 Si 1.86803 * 119.99888 * 335.32679 * 6 4 2
9 9 H 1.48494 * 109.46874 * 179.72321 * 8 6 4
10 10 H 1.48497 * 109.46669 * 299.72117 * 8 6 4
11 11 H 1.48501 * 109.46925 * 59.72371 * 8 6 4
12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3
13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1
14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1
15 15 C 1.50696 * 109.47338 * 189.99861 * 14 12 2
16 16 O 1.21282 * 120.00301 * 0.02562 * 15 14 12
17 17 N 1.34779 * 119.99954 * 180.02562 * 15 14 12
18 18 C 1.46498 * 119.99982 * 359.97438 * 17 15 14
19 19 C 1.46502 * 119.99819 * 180.02562 * 17 15 14
20 20 C 1.50700 * 109.47211 * 90.00118 * 19 17 15
21 21 C 1.39867 * 126.04014 * 90.02602 * 20 19 17
22 22 N 1.30837 * 108.19846 * 179.97438 * 21 20 19
23 23 N 1.40082 * 108.20717 * 359.97438 * 22 21 20
24 24 C 1.46498 * 126.03639 * 179.97438 * 23 22 21
25 25 C 1.34948 * 107.92428 * 359.75832 * 23 22 21
26 26 H 1.08998 * 109.47417 * 51.91130 * 1 2 3
27 27 H 1.09001 * 109.47132 * 171.91475 * 1 2 3
28 28 H 1.09002 * 109.46962 * 291.91327 * 1 2 3
29 29 H 0.97000 * 120.00009 * 355.22761 * 7 6 4
30 30 H 1.09002 * 109.46603 * 59.99758 * 13 12 2
31 31 H 1.08996 * 109.47049 * 179.97438 * 13 12 2
32 32 H 1.08994 * 109.47094 * 299.99946 * 13 12 2
33 33 H 1.08996 * 109.47188 * 310.00376 * 14 12 2
34 34 H 1.09007 * 109.46801 * 70.00069 * 14 12 2
35 35 H 1.09005 * 109.47119 * 89.99774 * 18 17 15
36 36 H 1.09000 * 109.47355 * 210.00440 * 18 17 15
37 37 H 1.08996 * 109.47474 * 330.00403 * 18 17 15
38 38 H 1.09002 * 109.46340 * 209.99960 * 19 17 15
39 39 H 1.08998 * 109.47341 * 329.99245 * 19 17 15
40 40 H 1.08000 * 125.90242 * 359.97438 * 21 20 19
41 41 H 1.09005 * 109.47215 * 89.97872 * 24 23 22
42 42 H 1.09006 * 109.47177 * 209.97573 * 24 23 22
43 43 H 1.08998 * 109.47470 * 329.97644 * 24 23 22
44 44 H 1.08001 * 126.12772 * 180.23652 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.5756 -1.6390 1.1339
6 6 1.7987 -0.1751 2.4793
7 7 1.7729 -0.9578 3.5359
8 14 1.5107 1.6608 2.6696
9 1 1.2783 1.9795 4.1012
10 1 2.7029 2.4016 2.1847
11 1 0.3221 2.0604 1.8742
12 7 2.0196 -0.6924 -1.1995
13 6 3.4850 -0.7944 -1.1872
14 6 1.5485 -0.0263 -2.4211
15 6 1.8577 -0.8910 -3.6159
16 8 2.4152 -1.9574 -3.4648
17 7 1.5148 -0.4792 -4.8526
18 6 0.8408 0.8087 -5.0352
19 6 1.8149 -1.3201 -6.0141
20 6 0.6564 -2.2478 -6.2755
21 6 -0.4420 -1.9809 -7.0992
22 7 -1.2340 -3.0220 -7.0743
23 7 -0.6634 -3.9860 -6.2331
24 6 -1.2263 -5.3030 -5.9254
25 6 0.4986 -3.4890 -5.7601
26 1 -0.3634 0.6339 -0.8088
27 1 -0.3633 -1.0175 -0.1445
28 1 -0.3633 0.3835 0.9534
29 1 1.8492 -1.9189 3.4295
30 1 3.8029 -1.3531 -0.3069
31 1 3.8207 -1.3115 -2.0861
32 1 3.9186 0.2052 -1.1593
33 1 0.4721 0.1325 -2.3563
34 1 2.0517 0.9347 -2.5281
35 1 1.5857 1.5914 -5.1791
36 1 0.1925 0.7587 -5.9100
37 1 0.2429 1.0343 -4.1523
38 1 1.9787 -0.6884 -6.8872
39 1 2.7124 -1.9062 -5.8162
40 1 -0.6077 -1.0724 -7.6591
41 1 -0.8638 -6.0316 -6.6507
42 1 -0.9197 -5.6042 -4.9236
43 1 -2.3141 -5.2534 -5.9728
44 1 1.1791 -3.9907 -5.0881
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000177364458.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:48
Heat of formation + Delta-G solvation = 67.874845 kcal
Electronic energy + Delta-G solvation = -24232.770762 eV
Core-core repulsion = 20802.113437 eV
Total energy + Delta-G solvation = -3430.657325 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.32389 -39.61159 -36.77965 -35.42300 -33.40663 -32.69971 -31.22865 -29.91353
-28.56189 -27.52061 -26.67468 -25.08510 -24.18948 -23.25075 -21.18486 -20.57230
-19.48076 -18.74142 -17.47141 -17.07426 -16.56003 -16.05957 -15.61098 -15.38585
-14.72455 -14.47106 -13.99266 -13.88203 -13.60144 -13.38181 -13.13382 -12.96390
-12.83781 -12.62806 -12.53440 -12.49256 -12.15610 -11.86923 -11.70278 -11.46504
-11.16365 -10.87014 -10.72039 -10.48947 -10.34221 -10.11420 -9.83448 -9.53216
-9.35589 -8.88794 -8.65492 -8.45543 -8.16888 -7.28351 -6.45189 -3.99241
1.78498 2.39732 2.52181 2.98471 3.35991 3.39150 3.43456 3.61208
4.36428 4.51913 4.69002 4.85957 4.93321 4.94620 5.01291 5.08228
5.18520 5.19809 5.23370 5.29739 5.42269 5.56793 5.60152 5.69673
5.77073 5.80569 6.04099 6.22174 6.33308 6.45708 6.49998 6.57921
6.61261 6.71449 6.88177 6.91405 7.01400 7.33488 7.47978 7.57356
7.79130 8.06325 8.35098 8.46704 8.55391 9.03755 9.64526 10.93444
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.021704 B = 0.003658 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.797535 B = 7653.157512 C = 8062.159117
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.192 3.808
3 H -0.011 1.011
4 C -0.596 4.596
5 H 0.066 0.934
6 C 0.038 3.962
7 N -0.897 5.897
8 Si 1.034 2.966
9 H -0.285 1.285
10 H -0.285 1.285
11 H -0.279 1.279
12 N -0.511 5.511
13 C 0.037 3.963
14 C 0.031 3.969
15 C 0.518 3.482
16 O -0.519 6.519
17 N -0.621 5.621
18 C 0.081 3.919
19 C 0.196 3.804
20 C -0.261 4.261
21 C 0.057 3.943
22 N -0.305 5.305
23 N -0.378 5.378
24 C 0.101 3.899
25 C 0.086 3.914
26 H 0.018 0.982
27 H 0.052 0.948
28 H 0.054 0.946
29 H 0.270 0.730
30 H 0.076 0.924
31 H 0.063 0.937
32 H 0.005 0.995
33 H 0.098 0.902
34 H 0.049 0.951
35 H 0.054 0.946
36 H 0.068 0.932
37 H 0.070 0.930
38 H 0.081 0.919
39 H 0.087 0.913
40 H 0.179 0.821
41 H 0.073 0.927
42 H 0.089 0.911
43 H 0.088 0.912
44 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.543 0.074 -22.117 22.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.084 3.916
3 H 0.006 0.994
4 C -0.634 4.634
5 H 0.084 0.916
6 C -0.169 4.169
7 N -0.530 5.530
8 Si 0.862 3.138
9 H -0.210 1.210
10 H -0.212 1.212
11 H -0.205 1.205
12 N -0.236 5.236
13 C -0.111 4.111
14 C -0.100 4.100
15 C 0.307 3.693
16 O -0.393 6.393
17 N -0.357 5.357
18 C -0.063 4.063
19 C 0.073 3.927
20 C -0.274 4.274
21 C -0.130 4.130
22 N -0.126 5.126
23 N -0.160 5.160
24 C -0.040 4.040
25 C -0.061 4.061
26 H 0.037 0.963
27 H 0.071 0.929
28 H 0.073 0.927
29 H 0.080 0.920
30 H 0.095 0.905
31 H 0.082 0.918
32 H 0.023 0.977
33 H 0.116 0.884
34 H 0.067 0.933
35 H 0.073 0.927
36 H 0.087 0.913
37 H 0.089 0.911
38 H 0.099 0.901
39 H 0.105 0.895
40 H 0.196 0.804
41 H 0.092 0.908
42 H 0.108 0.892
43 H 0.106 0.894
44 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -4.832 -0.468 -21.247 21.794
hybrid contribution 1.115 0.049 -0.838 1.395
sum -3.717 -0.419 -22.084 22.399
Atomic orbital electron populations
1.22187 0.98360 1.00190 0.99093 1.19601 0.91686 0.91878 0.88399
0.99357 1.21883 1.40628 1.10728 0.90169 0.91562 1.25611 0.93531
1.05600 0.92136 1.70836 1.43756 1.06234 1.32209 0.84173 0.77032
0.76487 0.76092 1.21037 1.21199 1.20533 1.61780 1.10733 1.51197
0.99869 1.22313 0.87277 0.98696 1.02792 1.22087 1.02306 0.94873
0.90763 1.20900 0.77762 0.87038 0.83620 1.90608 1.40894 1.22938
1.84894 1.48055 1.60768 1.20360 1.06525 1.21741 0.97068 0.84666
1.02792 1.19504 0.94376 0.91281 0.87562 1.20424 1.02037 0.97063
1.07831 1.23724 0.92623 0.97574 0.99050 1.77305 1.22293 0.99184
1.13796 1.48500 1.16800 1.14294 1.36366 1.21869 1.00746 0.79385
1.02015 1.22560 0.89525 0.95507 0.98545 0.96328 0.92911 0.92717
0.91973 0.90499 0.91831 0.97660 0.88371 0.93310 0.92733 0.91302
0.91095 0.90116 0.89511 0.80359 0.90824 0.89244 0.89365 0.80607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.13 8.47 37.16 0.31 -2.82 16
2 C 0.19 4.64 1.66 -68.87 -0.11 4.52 16
3 H -0.01 -0.26 6.70 -51.93 -0.35 -0.61 16
4 C -0.60 -16.85 7.98 -34.44 -0.27 -17.12 16
5 H 0.07 2.05 6.88 -52.48 -0.36 1.69 16
6 C 0.04 1.08 5.15 -17.82 -0.09 0.99 16
7 N -0.90 -27.43 13.70 55.43 0.76 -26.67 16
8 Si 1.03 24.96 26.49 -169.99 -4.50 20.46 16
9 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
11 H -0.28 -6.24 6.29 56.52 0.36 -5.88 16
12 N -0.51 -11.31 4.36 -237.74 -1.04 -12.34 16
13 C 0.04 0.80 8.88 60.07 0.53 1.34 16
14 C 0.03 0.55 3.81 -4.98 -0.02 0.53 16
15 C 0.52 8.53 7.36 -10.99 -0.08 8.44 16
16 O -0.52 -10.09 13.91 5.56 0.08 -10.02 16
17 N -0.62 -7.65 2.86 -182.95 -0.52 -8.17 16
18 C 0.08 0.72 10.24 59.85 0.61 1.33 16
19 C 0.20 2.11 5.89 -5.19 -0.03 2.08 16
20 C -0.26 -3.05 5.68 -105.06 -0.60 -3.65 16
21 C 0.06 0.63 11.96 -17.37 -0.21 0.43 16
22 N -0.30 -3.96 12.58 30.62 0.39 -3.57 16
23 N -0.38 -4.51 4.01 -68.16 -0.27 -4.79 16
24 C 0.10 0.80 11.47 59.85 0.69 1.49 16
25 C 0.09 1.07 11.40 -17.23 -0.20 0.87 16
26 H 0.02 0.34 6.64 -51.93 -0.34 0.00 16
27 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16
28 H 0.05 1.27 5.67 -51.93 -0.29 0.97 16
29 H 0.27 8.28 8.73 -40.82 -0.36 7.93 16
30 H 0.08 1.82 6.34 -51.93 -0.33 1.49 16
31 H 0.06 1.31 5.82 -51.93 -0.30 1.00 16
32 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16
33 H 0.10 1.63 5.26 -51.93 -0.27 1.36 16
34 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16
35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
36 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16
37 H 0.07 0.66 6.44 -51.93 -0.33 0.32 16
38 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16
39 H 0.09 1.04 7.42 -51.93 -0.39 0.65 16
40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16
41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16
LS Contribution 353.49 15.07 5.33 5.33
Total: -1.00 -34.90 353.49 -6.06 -40.96
By element:
Atomic # 1 Polarization: 7.20 SS G_CDS: -6.81 Total: 0.38 kcal
Atomic # 6 Polarization: -2.10 SS G_CDS: 0.53 Total: -1.57 kcal
Atomic # 7 Polarization: -54.86 SS G_CDS: -0.69 Total: -55.54 kcal
Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.02 kcal
Atomic # 14 Polarization: 24.96 SS G_CDS: -4.50 Total: 20.46 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -34.90 -6.06 -40.96 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000177364458.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.837 kcal
(2) G-P(sol) polarization free energy of solvation -34.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds