Wall clock time and date at job start Tue Mar 31 2020 03:36:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08997 * 109.46794 * 2 1
4 4 C 1.50693 * 109.47417 * 120.00148 * 2 1 3
5 5 H 1.08009 * 120.00046 * 114.31699 * 4 2 1
6 6 C 1.37878 * 120.00277 * 294.31785 * 4 2 1
7 7 N 1.31517 * 120.00046 * 155.04484 * 6 4 2
8 8 Si 1.86803 * 119.99888 * 335.32679 * 6 4 2
9 9 H 1.48494 * 109.46874 * 179.72321 * 8 6 4
10 10 H 1.48497 * 109.46669 * 299.72117 * 8 6 4
11 11 H 1.48501 * 109.46925 * 59.72371 * 8 6 4
12 12 N 1.46897 * 109.46761 * 240.00401 * 2 1 3
13 13 C 1.46904 * 111.00054 * 183.95091 * 12 2 1
14 14 C 1.46901 * 111.00395 * 59.99587 * 12 2 1
15 15 C 1.50696 * 109.47338 * 189.99861 * 14 12 2
16 16 O 1.21282 * 120.00301 * 0.02562 * 15 14 12
17 17 N 1.34779 * 119.99954 * 180.02562 * 15 14 12
18 18 C 1.46498 * 119.99982 * 359.97438 * 17 15 14
19 19 C 1.46502 * 119.99819 * 180.02562 * 17 15 14
20 20 C 1.50700 * 109.47211 * 90.00118 * 19 17 15
21 21 C 1.39867 * 126.04014 * 90.02602 * 20 19 17
22 22 N 1.30837 * 108.19846 * 179.97438 * 21 20 19
23 23 N 1.40082 * 108.20717 * 359.97438 * 22 21 20
24 24 C 1.46498 * 126.03639 * 179.97438 * 23 22 21
25 25 C 1.34948 * 107.92428 * 359.75832 * 23 22 21
26 26 H 1.08998 * 109.47417 * 51.91130 * 1 2 3
27 27 H 1.09001 * 109.47132 * 171.91475 * 1 2 3
28 28 H 1.09002 * 109.46962 * 291.91327 * 1 2 3
29 29 H 0.97000 * 120.00009 * 355.22761 * 7 6 4
30 30 H 1.09002 * 109.46603 * 59.99758 * 13 12 2
31 31 H 1.08996 * 109.47049 * 179.97438 * 13 12 2
32 32 H 1.08994 * 109.47094 * 299.99946 * 13 12 2
33 33 H 1.08996 * 109.47188 * 310.00376 * 14 12 2
34 34 H 1.09007 * 109.46801 * 70.00069 * 14 12 2
35 35 H 1.09005 * 109.47119 * 89.99774 * 18 17 15
36 36 H 1.09000 * 109.47355 * 210.00440 * 18 17 15
37 37 H 1.08996 * 109.47474 * 330.00403 * 18 17 15
38 38 H 1.09002 * 109.46340 * 209.99960 * 19 17 15
39 39 H 1.08998 * 109.47341 * 329.99245 * 19 17 15
40 40 H 1.08000 * 125.90242 * 359.97438 * 21 20 19
41 41 H 1.09005 * 109.47215 * 89.97872 * 24 23 22
42 42 H 1.09006 * 109.47177 * 209.97573 * 24 23 22
43 43 H 1.08998 * 109.47470 * 329.97644 * 24 23 22
44 44 H 1.08001 * 126.12772 * 180.23652 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.5756 -1.6390 1.1339
6 6 1.7987 -0.1751 2.4793
7 7 1.7729 -0.9578 3.5359
8 14 1.5107 1.6608 2.6696
9 1 1.2783 1.9795 4.1012
10 1 2.7029 2.4016 2.1847
11 1 0.3221 2.0604 1.8742
12 7 2.0196 -0.6924 -1.1995
13 6 3.4850 -0.7944 -1.1872
14 6 1.5485 -0.0263 -2.4211
15 6 1.8577 -0.8910 -3.6159
16 8 2.4152 -1.9574 -3.4648
17 7 1.5148 -0.4792 -4.8526
18 6 0.8408 0.8087 -5.0352
19 6 1.8149 -1.3201 -6.0141
20 6 0.6564 -2.2478 -6.2755
21 6 -0.4420 -1.9809 -7.0992
22 7 -1.2340 -3.0220 -7.0743
23 7 -0.6634 -3.9860 -6.2331
24 6 -1.2263 -5.3030 -5.9254
25 6 0.4986 -3.4890 -5.7601
26 1 -0.3634 0.6339 -0.8088
27 1 -0.3633 -1.0175 -0.1445
28 1 -0.3633 0.3835 0.9534
29 1 1.8492 -1.9189 3.4295
30 1 3.8029 -1.3531 -0.3069
31 1 3.8207 -1.3115 -2.0861
32 1 3.9186 0.2052 -1.1593
33 1 0.4721 0.1325 -2.3563
34 1 2.0517 0.9347 -2.5281
35 1 1.5857 1.5914 -5.1791
36 1 0.1925 0.7587 -5.9100
37 1 0.2429 1.0343 -4.1523
38 1 1.9787 -0.6884 -6.8872
39 1 2.7124 -1.9062 -5.8162
40 1 -0.6077 -1.0724 -7.6591
41 1 -0.8638 -6.0316 -6.6507
42 1 -0.9197 -5.6042 -4.9236
43 1 -2.3141 -5.2534 -5.9728
44 1 1.1791 -3.9907 -5.0881
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000177364458.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:36:47
Heat of formation + Delta-G solvation = 42.307642 kcal
Electronic energy + Delta-G solvation = -24233.879439 eV
Core-core repulsion = 20802.113437 eV
Total energy + Delta-G solvation = -3431.766002 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 294.180 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.19133 -40.84213 -38.40159 -36.55835 -34.79459 -34.19029 -32.25019 -31.69239
-29.79073 -28.54332 -27.48923 -26.57591 -25.84912 -24.75322 -22.01973 -21.68606
-21.07922 -19.97579 -19.51327 -18.12361 -17.65556 -17.10706 -16.96966 -16.26213
-16.11397 -15.61326 -15.42505 -15.33120 -15.10723 -14.58147 -14.20895 -14.10929
-13.90257 -13.77094 -13.71424 -13.50680 -13.27270 -13.24340 -13.07372 -12.88158
-12.73299 -12.52836 -12.20571 -12.17009 -11.94536 -11.66477 -11.59930 -10.97844
-10.68820 -10.39900 -10.34713 -9.62891 -9.36761 -8.96845 -8.73925 -6.28078
0.89272 1.47505 1.54428 1.58479 1.66893 1.74133 1.78780 2.36745
2.52453 3.02763 3.30397 3.61791 3.76341 3.98532 4.23797 4.26696
4.33833 4.35983 4.36492 4.45600 4.48061 4.51387 4.55095 4.60877
4.74896 4.76931 4.77514 4.80315 4.91076 4.97138 5.03968 5.10960
5.18703 5.20039 5.51470 5.67529 5.73906 5.86766 6.04475 6.09365
6.22620 6.39030 6.61860 6.71731 6.77485 7.35428 7.45982 8.63232
Molecular weight = 294.18amu
Principal moments of inertia in cm(-1)
A = 0.021704 B = 0.003658 C = 0.003472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.797535 B = 7653.157512 C = 8062.159117
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.193 3.807
3 H -0.002 1.002
4 C -0.600 4.600
5 H 0.019 0.981
6 C -0.013 4.013
7 N -0.931 5.931
8 Si 1.078 2.922
9 H -0.289 1.289
10 H -0.268 1.268
11 H -0.243 1.243
12 N -0.535 5.535
13 C 0.050 3.950
14 C 0.032 3.968
15 C 0.514 3.486
16 O -0.562 6.562
17 N -0.610 5.610
18 C 0.071 3.929
19 C 0.197 3.803
20 C -0.265 4.265
21 C 0.062 3.938
22 N -0.334 5.334
23 N -0.385 5.385
24 C 0.093 3.907
25 C 0.066 3.934
26 H 0.062 0.938
27 H 0.036 0.964
28 H 0.045 0.955
29 H 0.252 0.748
30 H 0.040 0.960
31 H 0.071 0.929
32 H 0.016 0.984
33 H 0.111 0.889
34 H 0.073 0.927
35 H 0.075 0.925
36 H 0.095 0.905
37 H 0.069 0.931
38 H 0.119 0.881
39 H 0.069 0.931
40 H 0.213 0.787
41 H 0.090 0.910
42 H 0.096 0.904
43 H 0.093 0.907
44 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.786 3.156 -24.828 25.482
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.085 3.915
3 H 0.016 0.984
4 C -0.638 4.638
5 H 0.037 0.963
6 C -0.212 4.212
7 N -0.565 5.565
8 Si 0.898 3.102
9 H -0.215 1.215
10 H -0.193 1.193
11 H -0.167 1.167
12 N -0.260 5.260
13 C -0.099 4.099
14 C -0.099 4.099
15 C 0.303 3.697
16 O -0.440 6.440
17 N -0.344 5.344
18 C -0.071 4.071
19 C 0.074 3.926
20 C -0.278 4.278
21 C -0.124 4.124
22 N -0.155 5.155
23 N -0.167 5.167
24 C -0.047 4.047
25 C -0.082 4.082
26 H 0.081 0.919
27 H 0.055 0.945
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.059 0.941
31 H 0.089 0.911
32 H 0.035 0.965
33 H 0.129 0.871
34 H 0.091 0.909
35 H 0.093 0.907
36 H 0.113 0.887
37 H 0.088 0.912
38 H 0.137 0.863
39 H 0.087 0.913
40 H 0.230 0.770
41 H 0.108 0.892
42 H 0.115 0.885
43 H 0.112 0.888
44 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges -6.100 2.621 -24.026 24.926
hybrid contribution 1.532 -1.012 -0.097 1.839
sum -4.568 1.609 -24.123 24.604
Atomic orbital electron populations
1.22056 0.96602 1.00236 1.00326 1.19467 0.92871 0.91567 0.87568
0.98435 1.22042 1.39850 1.09204 0.92704 0.96289 1.27114 0.92721
1.09613 0.91769 1.70973 1.46867 1.05360 1.33343 0.83637 0.79056
0.70941 0.76540 1.21482 1.19320 1.16657 1.61599 1.10736 1.52482
1.01155 1.22121 0.87612 0.98755 1.01373 1.22147 1.03049 0.95623
0.89034 1.20770 0.77839 0.86377 0.84751 1.90600 1.43156 1.24574
1.85672 1.48064 1.59482 1.21432 1.05388 1.22060 0.97893 0.83169
1.03996 1.19650 0.93302 0.91560 0.88039 1.20576 1.02505 0.96843
1.07835 1.24245 0.91595 0.98110 0.98457 1.77261 1.23433 1.00090
1.14727 1.48794 1.16645 1.15137 1.36117 1.22117 1.01107 0.78460
1.03011 1.22685 0.90012 0.96418 0.99061 0.91910 0.94499 0.93599
0.93917 0.94148 0.91053 0.96539 0.87093 0.90936 0.90664 0.88683
0.91185 0.86317 0.91261 0.77030 0.89164 0.88517 0.88793 0.81378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.68 8.47 71.98 0.61 -5.07 16
2 C 0.19 9.11 1.66 44.17 0.07 9.19 16
3 H 0.00 -0.08 6.70 -2.39 -0.02 -0.09 16
4 C -0.60 -34.83 7.98 25.60 0.20 -34.62 16
5 H 0.02 1.25 6.88 -2.91 -0.02 1.23 16
6 C -0.01 -0.76 5.15 84.65 0.44 -0.32 16
7 N -0.93 -58.91 13.70 21.45 0.29 -58.61 16
8 Si 1.08 49.08 26.49 68.60 1.82 50.90 16
9 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16
10 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
11 H -0.24 -9.62 6.29 99.48 0.63 -8.99 16
12 N -0.53 -23.32 4.36 -906.07 -3.95 -27.27 16
13 C 0.05 2.16 8.88 127.69 1.13 3.30 16
14 C 0.03 1.04 3.81 85.56 0.33 1.37 16
15 C 0.51 15.99 7.36 87.66 0.65 16.63 16
16 O -0.56 -21.86 13.91 -3.04 -0.04 -21.90 16
17 N -0.61 -13.09 2.86 -851.13 -2.43 -15.52 16
18 C 0.07 0.92 10.24 127.77 1.31 2.23 16
19 C 0.20 3.73 5.89 85.63 0.50 4.23 16
20 C -0.26 -5.67 5.68 -20.15 -0.11 -5.79 16
21 C 0.06 1.20 11.96 85.24 1.02 2.22 16
22 N -0.33 -8.11 12.58 -57.02 -0.72 -8.82 16
23 N -0.39 -8.92 4.01 -369.56 -1.48 -10.40 16
24 C 0.09 1.43 11.47 127.77 1.47 2.90 16
25 C 0.07 1.62 11.40 83.54 0.95 2.57 16
26 H 0.06 2.08 6.64 -2.39 -0.02 2.07 16
27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
28 H 0.05 2.00 5.67 -2.39 -0.01 1.99 16
29 H 0.25 16.38 8.73 -92.71 -0.81 15.57 16
30 H 0.04 2.01 6.34 -2.39 -0.02 1.99 16
31 H 0.07 2.98 5.82 -2.39 -0.01 2.96 16
32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.11 3.25 5.26 -2.39 -0.01 3.24 16
34 H 0.07 2.02 8.09 -2.38 -0.02 2.00 16
35 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16
36 H 0.09 0.79 8.07 -2.39 -0.02 0.77 16
37 H 0.07 0.96 6.44 -2.39 -0.02 0.95 16
38 H 0.12 1.35 8.07 -2.39 -0.02 1.33 16
39 H 0.07 1.58 7.42 -2.39 -0.02 1.57 16
40 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16
41 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16
42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16
43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
44 H 0.17 4.26 8.06 -2.91 -0.02 4.23 16
Total: -1.00 -79.29 353.49 2.92 -76.37
By element:
Atomic # 1 Polarization: 15.55 SS G_CDS: 0.87 Total: 16.42 kcal
Atomic # 6 Polarization: -9.73 SS G_CDS: 8.57 Total: -1.17 kcal
Atomic # 7 Polarization: -112.33 SS G_CDS: -8.29 Total: -120.62 kcal
Atomic # 8 Polarization: -21.86 SS G_CDS: -0.04 Total: -21.90 kcal
Atomic # 14 Polarization: 49.08 SS G_CDS: 1.82 Total: 50.90 kcal
Total: -79.29 2.92 -76.37 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000177364458.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.679 kcal
(2) G-P(sol) polarization free energy of solvation -79.293 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds