Wall clock time and date at job start Tue Mar 31 2020 03:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.53002 * 109.47015 * 293.95082 * 3 2 1 5 5 C 1.50692 * 109.47406 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99879 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00286 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99920 * 0.02562 * 7 5 4 9 9 C 1.46505 * 120.00117 * 179.97438 * 7 5 4 10 10 C 1.50705 * 109.46692 * 90.00030 * 9 7 5 11 11 H 1.07996 * 120.00067 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99846 * 179.97438 * 10 9 7 13 13 N 1.31513 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99941 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47525 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47648 * 120.00152 * 14 12 10 17 17 H 1.48511 * 109.47076 * 240.00087 * 14 12 10 18 18 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 19 19 C 1.53002 * 109.47243 * 66.04370 * 18 2 1 20 20 N 1.46506 * 109.47035 * 179.97438 * 19 18 2 21 21 C 1.34944 * 126.03372 * 125.00124 * 20 19 18 22 22 C 1.35317 * 107.74658 * 179.97438 * 21 20 19 23 23 C 1.39871 * 107.91935 * 0.02562 * 22 21 20 24 24 N 1.30845 * 108.20108 * 359.74200 * 23 22 21 25 25 H 1.08996 * 109.46988 * 296.04665 * 1 2 3 26 26 H 1.09000 * 109.47343 * 56.05204 * 1 2 3 27 27 H 1.09000 * 109.46850 * 176.05026 * 1 2 3 28 28 H 1.08994 * 109.47665 * 53.95228 * 3 2 1 29 29 H 1.08996 * 109.47097 * 173.95947 * 3 2 1 30 30 H 1.08996 * 109.47540 * 300.00561 * 4 3 2 31 31 H 1.09004 * 109.46914 * 60.00043 * 4 3 2 32 32 H 1.09006 * 109.46808 * 89.99880 * 8 7 5 33 33 H 1.08999 * 109.46929 * 209.99621 * 8 7 5 34 34 H 1.08993 * 109.46906 * 329.99861 * 8 7 5 35 35 H 1.08996 * 109.46955 * 209.99730 * 9 7 5 36 36 H 1.08995 * 109.46962 * 330.00342 * 9 7 5 37 37 H 0.97003 * 119.99783 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47041 * 306.04581 * 18 2 1 39 39 H 1.09004 * 109.47535 * 186.04620 * 18 2 1 40 40 H 1.09004 * 109.46930 * 60.00143 * 19 18 2 41 41 H 1.09000 * 109.47312 * 300.00087 * 19 18 2 42 42 H 1.08001 * 126.12891 * 0.02562 * 21 20 19 43 43 H 1.08002 * 126.04160 * 179.97438 * 22 21 20 44 44 H 1.07995 * 125.90070 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1709 3.4644 -1.3181 6 8 2.7864 3.8778 -0.3583 7 7 1.9695 4.2636 -2.3846 8 6 1.2256 3.7644 -3.5438 9 6 2.4935 5.6317 -2.3842 10 6 3.8858 5.6365 -2.9610 11 1 4.3351 4.7129 -3.2948 12 6 4.5855 6.8201 -3.0634 13 7 4.0376 7.9449 -2.6582 14 14 6.3109 6.8261 -3.7789 15 1 6.6947 5.4424 -4.1576 16 1 6.3451 7.6965 -4.9817 17 1 7.2652 7.3443 -2.7658 18 6 1.9955 -0.7659 1.1376 19 6 1.6314 -2.2426 0.9704 20 7 2.1571 -3.0065 2.1046 21 6 1.4421 -3.8084 2.9213 22 6 2.2921 -4.3279 3.8370 23 6 3.5703 -3.8258 3.5712 24 7 3.4914 -3.0377 2.5297 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9274 0.8308 29 1 3.0797 1.3444 0.1081 30 1 2.0657 1.5015 -2.1492 31 1 0.5472 2.0844 -1.4266 32 1 0.1645 3.9771 -3.4136 33 1 1.5867 4.2569 -4.4467 34 1 1.3721 2.6881 -3.6336 35 1 1.8476 6.2683 -2.9888 36 1 2.5223 6.0094 -1.3622 37 1 4.5300 8.7776 -2.7299 38 1 1.5611 -0.3872 2.0628 39 1 3.0798 -0.6611 1.1756 40 1 2.0658 -2.6214 0.0451 41 1 0.5472 -2.3475 0.9324 42 1 0.3815 -4.0016 2.8552 43 1 2.0299 -5.0090 4.6330 44 1 4.4680 -4.0527 4.1271 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181567745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:23 Heat of formation + Delta-G solvation = 53.763291 kcal Electronic energy + Delta-G solvation = -22961.649286 eV Core-core repulsion = 19530.380038 eV Total energy + Delta-G solvation = -3431.269248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.180 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34805 -39.20198 -37.82606 -34.82543 -33.94631 -32.63110 -31.15660 -30.31116 -28.50723 -27.82447 -26.61909 -25.65452 -23.81034 -22.41358 -21.35466 -21.00016 -20.59102 -18.35094 -17.61814 -16.57028 -16.46687 -16.09875 -15.55301 -15.37033 -14.98389 -14.81359 -14.52371 -14.16888 -13.99768 -13.65371 -13.53954 -13.10915 -12.89509 -12.55762 -12.37211 -12.19301 -12.17867 -11.88511 -11.77206 -11.52722 -11.35354 -11.15162 -10.90645 -10.80303 -10.75375 -10.56577 -10.14859 -9.68015 -9.59982 -8.91077 -8.85012 -8.58577 -8.43245 -7.63527 -6.03784 -4.08340 1.65842 2.21589 2.62256 3.30556 3.37582 3.40475 3.46527 3.58251 4.11880 4.23318 4.46328 4.55320 4.63845 4.76866 4.89119 4.96921 5.11411 5.20217 5.24769 5.28465 5.31036 5.34861 5.47961 5.55482 5.56268 5.63512 5.71090 5.76147 5.80158 5.92366 6.07022 6.07308 6.22890 6.39859 6.70762 6.80250 6.85004 7.06253 7.44694 7.47496 7.55077 7.92908 8.24250 8.42645 8.91286 9.10407 9.56861 11.04370 Molecular weight = 294.18amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002527 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.285366 B =11077.131746 C =11855.552913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.541 5.541 3 C 0.074 3.926 4 C -0.135 4.135 5 C 0.504 3.496 6 O -0.545 6.545 7 N -0.603 5.603 8 C 0.084 3.916 9 C 0.244 3.756 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.046 3.954 19 C 0.137 3.863 20 N -0.370 5.370 21 C 0.052 3.948 22 C -0.278 4.278 23 C 0.041 3.959 24 N -0.291 5.291 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -23.337 6.894 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.266 5.266 3 C -0.054 4.054 4 C -0.175 4.175 5 C 0.290 3.710 6 O -0.424 6.424 7 N -0.335 5.335 8 C -0.061 4.061 9 C 0.125 3.875 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.082 4.082 19 C 0.015 3.985 20 N -0.153 5.153 21 C -0.095 4.095 22 C -0.307 4.307 23 C -0.145 4.145 24 N -0.113 5.113 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.189 0.811 43 H 0.164 0.836 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.631 -22.271 6.039 25.004 hybrid contribution 0.090 -0.059 0.785 0.792 sum -9.541 -22.330 6.824 25.224 Atomic orbital electron populations 1.22562 0.87686 1.01896 1.01347 1.61894 1.07798 1.14952 1.41934 1.21822 1.01281 0.85749 0.96518 1.21643 1.01992 0.94381 0.99492 1.20285 0.80671 0.86874 0.83174 1.90673 1.41432 1.75640 1.34607 1.48165 1.53802 1.16164 1.15418 1.21638 0.95148 0.99029 0.90236 1.19291 0.93765 0.75682 0.98769 1.21473 1.00074 0.93781 1.41004 0.92406 1.24951 0.98349 0.95384 0.95558 1.69945 1.37747 0.98473 1.47301 0.86435 0.84268 0.78039 0.78635 1.19770 1.20968 1.20867 1.22285 1.02278 0.91526 0.92160 1.21725 0.98899 0.91200 0.86659 1.48747 1.05810 1.35864 1.24856 1.22578 0.98802 0.95127 0.92967 1.21518 0.93090 1.10625 1.05487 1.23929 0.98854 0.96216 0.95491 1.77422 0.95913 1.22585 1.15334 0.95337 0.90540 0.91545 0.93730 0.89619 0.88587 0.89744 0.93865 0.90817 0.92291 0.95046 0.93897 0.92787 0.94226 0.89003 0.88686 0.88677 0.81096 0.83634 0.80090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.13 60.06 0.55 0.66 16 2 N -0.54 -5.91 4.76 -242.92 -1.16 -7.07 16 3 C 0.07 1.04 4.25 -3.82 -0.02 1.02 16 4 C -0.13 -1.95 4.18 -27.89 -0.12 -2.06 16 5 C 0.50 10.44 7.67 -10.99 -0.08 10.35 16 6 O -0.55 -13.79 15.56 5.55 0.09 -13.71 16 7 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 8 C 0.08 1.31 10.24 59.85 0.61 1.92 16 9 C 0.24 6.47 5.16 -5.19 -0.03 6.45 16 10 C -0.52 -15.08 9.39 -34.44 -0.32 -15.41 16 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.90 22.16 29.54 -169.99 -5.02 17.13 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 18 C 0.05 0.49 5.15 -3.83 -0.02 0.47 16 19 C 0.14 1.15 6.43 -4.04 -0.03 1.12 16 20 N -0.37 -3.71 3.68 -61.36 -0.23 -3.94 16 21 C 0.05 0.41 11.45 -17.22 -0.20 0.21 16 22 C -0.28 -2.28 10.80 -40.01 -0.43 -2.71 16 23 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 24 N -0.29 -3.54 12.42 30.63 0.38 -3.16 16 25 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.63 6.30 -51.93 -0.33 0.30 16 27 H 0.07 0.42 6.47 -51.93 -0.34 0.08 16 28 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 30 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 31 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.09 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.55 6.48 -51.93 -0.34 0.21 16 42 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -35.62 364.60 -7.64 -43.26 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.02 Total: -2.29 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.39 Total: 3.85 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.79 Total: -53.73 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.62 -7.64 -43.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181567745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.019 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds